Wall clock time and date at job start Mon Mar 30 2020 01:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46898 * 109.47605 * 2 1 4 4 C 1.46903 * 110.99815 * 288.17999 * 3 2 1 5 5 C 1.50691 * 109.47440 * 160.35380 * 4 3 2 6 6 H 1.08005 * 120.00274 * 4.64821 * 5 4 3 7 7 C 1.37874 * 120.00209 * 184.64542 * 5 4 3 8 8 N 1.31514 * 120.00245 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00169 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46822 * 60.00434 * 9 7 5 11 11 H 1.48495 * 109.47219 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47307 * 300.00316 * 9 7 5 13 13 C 1.46901 * 111.00540 * 164.22705 * 3 2 1 14 14 C 1.50693 * 109.46814 * 293.95455 * 13 3 2 15 15 C 1.38236 * 120.00614 * 89.99601 * 14 13 3 16 16 C 1.38231 * 120.00198 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00354 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99954 * 179.97438 * 17 16 15 19 19 C 1.52998 * 109.47096 * 90.00500 * 18 17 16 20 20 C 1.53004 * 109.46867 * 294.99487 * 19 18 17 21 21 C 1.52997 * 109.47076 * 174.99811 * 19 18 17 22 22 C 1.38238 * 119.99684 * 0.25393 * 17 16 15 23 23 C 1.38234 * 119.99679 * 359.49335 * 22 17 16 24 24 H 1.09001 * 109.47187 * 299.64484 * 1 2 3 25 25 H 1.09001 * 109.46962 * 59.63498 * 1 2 3 26 26 H 1.08997 * 109.47432 * 179.63652 * 1 2 3 27 27 H 1.08994 * 109.47216 * 239.99004 * 2 1 3 28 28 H 1.09004 * 109.47064 * 119.99748 * 2 1 3 29 29 H 1.09003 * 109.46963 * 280.36155 * 4 3 2 30 30 H 1.09002 * 109.46702 * 40.35135 * 4 3 2 31 31 H 0.97002 * 120.00152 * 180.02562 * 8 7 5 32 32 H 1.08988 * 109.47212 * 173.94798 * 13 3 2 33 33 H 1.09004 * 109.46687 * 53.95066 * 13 3 2 34 34 H 1.08002 * 119.99692 * 359.97438 * 15 14 13 35 35 H 1.08007 * 120.00019 * 180.02562 * 16 15 14 36 36 H 1.09003 * 109.47163 * 329.99888 * 18 17 16 37 37 H 1.09005 * 109.46670 * 210.00165 * 18 17 16 38 38 H 1.08994 * 109.47242 * 54.99532 * 19 18 17 39 39 H 1.08994 * 109.47226 * 300.00055 * 20 19 18 40 40 H 1.09000 * 109.47051 * 60.00291 * 20 19 18 41 41 H 1.08999 * 109.47249 * 179.97438 * 20 19 18 42 42 H 1.09008 * 109.46912 * 179.97438 * 21 19 18 43 43 H 1.08999 * 109.47449 * 299.99387 * 21 19 18 44 44 H 1.09006 * 109.47196 * 60.00076 * 21 19 18 45 45 H 1.07997 * 119.99574 * 179.72998 * 22 17 16 46 46 H 1.08003 * 119.99708 * 180.25915 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7918 2.0239 -1.3030 5 6 1.8435 3.5215 -1.1441 6 1 2.1014 3.9546 -0.1889 7 6 1.5618 4.3389 -2.2180 8 7 1.2474 3.8116 -3.3811 9 14 1.6252 6.1954 -2.0208 10 1 2.9925 6.6029 -1.6088 11 1 1.2849 6.8424 -3.3133 12 1 0.6496 6.6167 -0.9837 13 6 3.4395 1.4413 0.3728 14 6 3.6003 1.0043 1.8059 15 6 3.8137 -0.3290 2.1023 16 6 3.9617 -0.7297 3.4169 17 6 3.8956 0.2026 4.4354 18 6 4.0564 -0.2345 5.8686 19 6 5.5351 -0.1758 6.2570 20 6 6.3200 -1.1975 5.4318 21 6 5.6848 -0.4988 7.7449 22 6 3.6764 1.5350 4.1395 23 6 3.5337 1.9365 2.8245 24 1 -0.3633 0.5083 0.8932 25 1 -0.3633 0.5195 -0.8867 26 1 -0.3634 -1.0276 -0.0065 27 1 1.8933 -0.5140 -0.8898 28 1 1.8933 -0.5138 0.8900 29 1 2.5640 1.7059 -2.0036 30 1 0.8131 1.7325 -1.6843 31 1 1.0496 4.3867 -4.1368 32 1 3.8042 2.4623 0.2612 33 1 4.0120 0.7781 -0.2757 34 1 3.8649 -1.0575 1.3066 35 1 4.1289 -1.7714 3.6484 36 1 3.6916 -1.2556 5.9802 37 1 3.4838 0.4287 6.5171 38 1 5.9226 0.8240 6.0614 39 1 5.9325 -2.1973 5.6274 40 1 6.2133 -0.9674 4.3717 41 1 7.3736 -1.1554 5.7081 42 1 6.7384 -0.4573 8.0215 43 1 5.1257 0.2291 8.3328 44 1 5.2973 -1.4986 7.9405 45 1 3.6205 2.2627 4.9355 46 1 3.3665 2.9781 2.5930 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349839722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:16 Heat of formation + Delta-G solvation = -0.450142 kcal Electronic energy + Delta-G solvation = -21219.010901 eV Core-core repulsion = 18300.350707 eV Total energy + Delta-G solvation = -2918.660194 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.53532 -37.20615 -35.85909 -32.66689 -31.86397 -30.71129 -29.89107 -27.80211 -27.30943 -26.01030 -23.81089 -22.78800 -22.17103 -20.89510 -19.97327 -19.59991 -16.42794 -16.10455 -15.48345 -15.13437 -14.83780 -14.58514 -14.38904 -14.25744 -13.84944 -13.39610 -13.29558 -13.11731 -12.68755 -12.41623 -12.26076 -12.06265 -11.94411 -11.74721 -11.51747 -11.22254 -11.06729 -10.98959 -10.94823 -10.80048 -10.77385 -10.60631 -10.52798 -10.41125 -10.19612 -9.61363 -9.22925 -8.58244 -8.39655 -8.19737 -7.19774 -5.99564 -4.00555 1.62607 1.70729 3.35097 3.39070 3.42088 3.99817 4.45430 4.68065 4.72187 4.82298 5.06504 5.11918 5.21701 5.27100 5.36477 5.38020 5.38784 5.46611 5.52511 5.65834 5.73729 5.75562 5.76162 5.80049 5.88961 5.93677 5.97339 6.11757 6.15070 6.15791 6.19768 6.29556 6.38124 6.40129 6.55077 6.64922 6.71798 6.84442 6.86237 7.06153 7.27996 7.33133 7.37158 7.85157 8.15921 8.24916 8.58423 9.06594 9.63240 11.11023 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.024207 B = 0.003703 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.423940 B = 7560.040404 C = 8241.268832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.045 3.955 3 N -0.528 5.528 4 C 0.191 3.809 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.097 3.903 14 C -0.062 4.062 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.092 4.092 18 C -0.073 4.073 19 C -0.092 4.092 20 C -0.150 4.150 21 C -0.147 4.147 22 C -0.120 4.120 23 C -0.095 4.095 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.019 0.981 28 H 0.064 0.936 29 H -0.012 1.012 30 H 0.038 0.962 31 H 0.261 0.739 32 H 0.089 0.911 33 H 0.027 0.973 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.115 0.885 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.184 -10.054 17.274 21.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 N -0.253 5.253 4 C 0.066 3.934 5 C -0.542 4.542 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.031 4.031 14 C -0.063 4.063 15 C -0.136 4.136 16 C -0.138 4.138 17 C -0.093 4.093 18 C -0.110 4.110 19 C -0.110 4.110 20 C -0.207 4.207 21 C -0.205 4.205 22 C -0.138 4.138 23 C -0.114 4.114 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.006 0.994 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.045 0.955 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.133 0.867 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.857 -9.739 17.413 21.097 hybrid contribution 0.387 0.570 -0.726 1.001 sum 7.244 -9.169 16.687 20.372 Atomic orbital electron populations 1.21726 0.95634 0.99794 1.02801 1.22101 0.95977 0.91089 0.99161 1.62177 1.14478 1.14315 1.34347 1.19801 0.96485 0.94210 0.82924 1.21130 1.46049 0.90681 0.96331 0.92010 1.24982 0.95530 0.98894 0.95227 1.69946 1.47659 1.35302 1.01126 0.86582 0.78506 0.85296 0.77152 1.20303 1.21426 1.20189 1.20987 0.90648 1.01638 0.89848 1.20048 0.96952 0.92997 0.96290 1.21037 1.00756 0.95594 0.96194 1.20876 1.01718 0.98699 0.92475 1.19705 1.01016 0.93619 0.94916 1.20628 0.96099 1.01539 0.92745 1.21081 0.95066 0.99982 0.94868 1.21915 0.99354 0.98622 1.00843 1.21857 1.01457 1.01458 0.95679 1.20965 1.01263 0.95163 0.96428 1.21077 0.98354 0.99969 0.91968 0.92503 0.92107 0.93787 0.96303 0.91785 0.99441 0.94427 0.92926 0.89281 0.95494 0.86709 0.86831 0.91392 0.91326 0.91127 0.92947 0.91865 0.93122 0.92805 0.92757 0.92782 0.86703 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.98 37.16 0.37 -2.17 16 2 C 0.05 0.85 5.52 -3.83 -0.02 0.83 16 3 N -0.53 -11.52 4.37 -237.53 -1.04 -12.56 16 4 C 0.19 4.97 4.59 -4.98 -0.02 4.95 16 5 C -0.50 -14.14 8.61 -34.45 -0.30 -14.43 16 6 H 0.06 1.71 7.66 -52.48 -0.40 1.31 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 9 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.10 1.88 4.94 -4.98 -0.02 1.86 16 14 C -0.06 -1.04 4.93 -104.63 -0.52 -1.56 16 15 C -0.12 -1.71 7.85 -39.58 -0.31 -2.02 16 16 C -0.12 -1.52 7.96 -39.59 -0.32 -1.84 16 17 C -0.09 -1.14 4.71 -104.62 -0.49 -1.63 16 18 C -0.07 -0.71 4.84 -27.88 -0.14 -0.84 16 19 C -0.09 -0.81 2.91 -90.62 -0.26 -1.07 16 20 C -0.15 -1.32 8.76 37.16 0.33 -1.00 16 21 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 22 C -0.12 -1.63 9.70 -39.58 -0.38 -2.01 16 23 C -0.10 -1.51 9.70 -39.58 -0.38 -1.89 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.06 1.21 6.52 -51.93 -0.34 0.87 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 28 H 0.06 1.10 5.14 -51.93 -0.27 0.83 16 29 H -0.01 -0.34 8.00 -51.93 -0.42 -0.75 16 30 H 0.04 1.05 6.23 -51.93 -0.32 0.72 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.09 1.87 7.26 -51.94 -0.38 1.49 16 33 H 0.03 0.51 8.07 -51.93 -0.42 0.10 16 34 H 0.11 1.57 7.73 -52.49 -0.41 1.17 16 35 H 0.11 1.22 8.04 -52.48 -0.42 0.80 16 36 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 37 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.64 6.27 -51.93 -0.33 0.31 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.37 8.14 -51.92 -0.42 -0.06 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.12 1.99 8.06 -52.48 -0.42 1.57 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -29.50 362.88 -10.40 -39.89 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -8.32 Total: -1.29 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -2.23 Total: -22.11 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.30 Total: -38.67 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.50 -10.40 -39.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349839722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.442 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds