Wall clock time and date at job start Mon Mar 30 2020 01:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46898 * 109.47605 * 2 1 4 4 C 1.46903 * 110.99815 * 288.17999 * 3 2 1 5 5 C 1.50691 * 109.47440 * 160.35380 * 4 3 2 6 6 H 1.08005 * 120.00274 * 4.64821 * 5 4 3 7 7 C 1.37874 * 120.00209 * 184.64542 * 5 4 3 8 8 N 1.31514 * 120.00245 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00169 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46822 * 60.00434 * 9 7 5 11 11 H 1.48495 * 109.47219 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47307 * 300.00316 * 9 7 5 13 13 C 1.46901 * 111.00540 * 164.22705 * 3 2 1 14 14 C 1.50693 * 109.46814 * 293.95455 * 13 3 2 15 15 C 1.38236 * 120.00614 * 89.99601 * 14 13 3 16 16 C 1.38231 * 120.00198 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00354 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99954 * 179.97438 * 17 16 15 19 19 C 1.52998 * 109.47096 * 90.00500 * 18 17 16 20 20 C 1.53004 * 109.46867 * 294.99487 * 19 18 17 21 21 C 1.52997 * 109.47076 * 174.99811 * 19 18 17 22 22 C 1.38238 * 119.99684 * 0.25393 * 17 16 15 23 23 C 1.38234 * 119.99679 * 359.49335 * 22 17 16 24 24 H 1.09001 * 109.47187 * 299.64484 * 1 2 3 25 25 H 1.09001 * 109.46962 * 59.63498 * 1 2 3 26 26 H 1.08997 * 109.47432 * 179.63652 * 1 2 3 27 27 H 1.08994 * 109.47216 * 239.99004 * 2 1 3 28 28 H 1.09004 * 109.47064 * 119.99748 * 2 1 3 29 29 H 1.09003 * 109.46963 * 280.36155 * 4 3 2 30 30 H 1.09002 * 109.46702 * 40.35135 * 4 3 2 31 31 H 0.97002 * 120.00152 * 180.02562 * 8 7 5 32 32 H 1.08988 * 109.47212 * 173.94798 * 13 3 2 33 33 H 1.09004 * 109.46687 * 53.95066 * 13 3 2 34 34 H 1.08002 * 119.99692 * 359.97438 * 15 14 13 35 35 H 1.08007 * 120.00019 * 180.02562 * 16 15 14 36 36 H 1.09003 * 109.47163 * 329.99888 * 18 17 16 37 37 H 1.09005 * 109.46670 * 210.00165 * 18 17 16 38 38 H 1.08994 * 109.47242 * 54.99532 * 19 18 17 39 39 H 1.08994 * 109.47226 * 300.00055 * 20 19 18 40 40 H 1.09000 * 109.47051 * 60.00291 * 20 19 18 41 41 H 1.08999 * 109.47249 * 179.97438 * 20 19 18 42 42 H 1.09008 * 109.46912 * 179.97438 * 21 19 18 43 43 H 1.08999 * 109.47449 * 299.99387 * 21 19 18 44 44 H 1.09006 * 109.47196 * 60.00076 * 21 19 18 45 45 H 1.07997 * 119.99574 * 179.72998 * 22 17 16 46 46 H 1.08003 * 119.99708 * 180.25915 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7918 2.0239 -1.3030 5 6 1.8435 3.5215 -1.1441 6 1 2.1014 3.9546 -0.1889 7 6 1.5618 4.3389 -2.2180 8 7 1.2474 3.8116 -3.3811 9 14 1.6252 6.1954 -2.0208 10 1 2.9925 6.6029 -1.6088 11 1 1.2849 6.8424 -3.3133 12 1 0.6496 6.6167 -0.9837 13 6 3.4395 1.4413 0.3728 14 6 3.6003 1.0043 1.8059 15 6 3.8137 -0.3290 2.1023 16 6 3.9617 -0.7297 3.4169 17 6 3.8956 0.2026 4.4354 18 6 4.0564 -0.2345 5.8686 19 6 5.5351 -0.1758 6.2570 20 6 6.3200 -1.1975 5.4318 21 6 5.6848 -0.4988 7.7449 22 6 3.6764 1.5350 4.1395 23 6 3.5337 1.9365 2.8245 24 1 -0.3633 0.5083 0.8932 25 1 -0.3633 0.5195 -0.8867 26 1 -0.3634 -1.0276 -0.0065 27 1 1.8933 -0.5140 -0.8898 28 1 1.8933 -0.5138 0.8900 29 1 2.5640 1.7059 -2.0036 30 1 0.8131 1.7325 -1.6843 31 1 1.0496 4.3867 -4.1368 32 1 3.8042 2.4623 0.2612 33 1 4.0120 0.7781 -0.2757 34 1 3.8649 -1.0575 1.3066 35 1 4.1289 -1.7714 3.6484 36 1 3.6916 -1.2556 5.9802 37 1 3.4838 0.4287 6.5171 38 1 5.9226 0.8240 6.0614 39 1 5.9325 -2.1973 5.6274 40 1 6.2133 -0.9674 4.3717 41 1 7.3736 -1.1554 5.7081 42 1 6.7384 -0.4573 8.0215 43 1 5.1257 0.2291 8.3328 44 1 5.2973 -1.4986 7.9405 45 1 3.6205 2.2627 4.9355 46 1 3.3665 2.9781 2.5930 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349839722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:15 Heat of formation + Delta-G solvation = -14.966024 kcal Electronic energy + Delta-G solvation = -21219.640356 eV Core-core repulsion = 18300.350707 eV Total energy + Delta-G solvation = -2919.289650 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.67361 -38.62850 -36.88695 -34.77364 -33.06892 -31.87016 -31.40353 -29.36398 -27.94659 -27.51935 -25.17578 -24.51018 -23.45272 -22.07027 -21.20906 -20.74930 -18.58166 -17.24064 -16.83172 -16.55073 -16.30795 -15.90386 -15.53640 -15.35553 -15.10127 -14.99403 -14.38087 -14.20811 -14.18536 -13.83432 -13.31155 -13.22303 -13.04951 -12.93417 -12.87316 -12.78276 -12.59810 -12.52893 -12.24017 -12.20364 -12.07200 -11.79098 -11.64441 -11.60217 -11.44308 -11.40049 -11.18868 -10.58841 -9.70063 -9.36553 -8.97912 -8.19176 -6.29049 0.48860 0.59095 1.39909 1.43212 1.51037 2.40252 2.83955 3.12369 3.48846 3.85082 3.93450 4.03094 4.11935 4.15099 4.21703 4.24306 4.34400 4.44010 4.51243 4.65910 4.67849 4.73952 4.77368 4.83526 4.87580 4.92187 4.94672 5.01946 5.03204 5.11922 5.12785 5.20326 5.23149 5.25580 5.29195 5.36163 5.39080 5.48946 5.53093 5.60072 5.67580 5.80924 5.86807 6.09204 6.20405 6.39125 6.64589 6.85753 7.40058 8.91211 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.024207 B = 0.003703 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.423940 B = 7560.040404 C = 8241.268832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.044 3.956 3 N -0.536 5.536 4 C 0.206 3.794 5 C -0.520 4.520 6 H 0.059 0.941 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.103 3.897 14 C -0.083 4.083 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.083 4.083 18 C -0.071 4.071 19 C -0.090 4.090 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.122 4.122 23 C -0.113 4.113 24 H 0.054 0.946 25 H 0.032 0.968 26 H 0.079 0.921 27 H 0.015 0.985 28 H 0.088 0.912 29 H -0.042 1.042 30 H 0.014 0.986 31 H 0.264 0.736 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.134 0.866 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.552 -10.912 20.021 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.083 4.083 3 N -0.260 5.260 4 C 0.080 3.920 5 C -0.558 4.558 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.792 3.208 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.194 1.194 13 C -0.025 4.025 14 C -0.084 4.084 15 C -0.139 4.139 16 C -0.131 4.131 17 C -0.083 4.083 18 C -0.108 4.108 19 C -0.108 4.108 20 C -0.208 4.208 21 C -0.201 4.201 22 C -0.139 4.139 23 C -0.131 4.131 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.034 0.966 28 H 0.106 0.894 29 H -0.024 1.024 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.140 0.860 35 H 0.158 0.842 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.152 0.848 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.232 -10.610 20.181 23.920 hybrid contribution 0.316 0.753 -1.510 1.717 sum 7.548 -9.857 18.671 22.422 Atomic orbital electron populations 1.21689 0.94839 1.01610 1.01234 1.22209 0.96636 0.89443 1.00056 1.62120 1.16273 1.16227 1.31401 1.19440 0.94115 0.93949 0.84456 1.21424 1.46104 0.91899 0.96379 0.92264 1.25889 0.94887 1.04077 0.94746 1.70075 1.48401 1.37188 1.01944 0.85472 0.78978 0.79005 0.77389 1.19283 1.20774 1.19374 1.20860 0.89114 1.00263 0.92241 1.19786 0.99866 0.94387 0.94340 1.21125 1.00684 0.94595 0.97533 1.21163 1.00315 1.00145 0.91524 1.20064 0.98797 0.92930 0.96526 1.20690 0.96890 1.02438 0.90753 1.21055 0.94283 0.99500 0.95979 1.21916 0.99852 0.99166 0.99823 1.21824 1.01930 1.01993 0.94393 1.21173 1.00674 0.96397 0.95702 1.21078 0.99628 0.99305 0.93130 0.92732 0.94889 0.90265 0.96633 0.89405 1.02443 0.96746 0.92713 0.91826 0.95669 0.85971 0.84154 0.90044 0.90455 0.92148 0.91896 0.93365 0.92668 0.92404 0.92333 0.92048 0.84833 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 9.98 71.98 0.72 -4.13 16 2 C 0.04 1.68 5.52 86.30 0.48 2.15 16 3 N -0.54 -24.22 4.37 -905.41 -3.96 -28.18 16 4 C 0.21 11.35 4.59 85.55 0.39 11.74 16 5 C -0.52 -30.28 8.61 25.60 0.22 -30.06 16 6 H 0.06 3.40 7.66 -2.91 -0.02 3.38 16 7 C 0.00 0.10 5.46 84.65 0.46 0.56 16 8 N -0.94 -57.34 13.29 21.45 0.28 -57.06 16 9 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 C 0.10 4.19 4.94 85.55 0.42 4.61 16 14 C -0.08 -2.80 4.93 -19.87 -0.10 -2.90 16 15 C -0.12 -3.36 7.85 22.27 0.17 -3.19 16 16 C -0.11 -2.58 7.96 22.27 0.18 -2.41 16 17 C -0.08 -1.83 4.71 -19.87 -0.09 -1.92 16 18 C -0.07 -1.12 4.84 29.85 0.14 -0.97 16 19 C -0.09 -1.32 2.91 -10.79 -0.03 -1.35 16 20 C -0.15 -2.23 8.76 71.98 0.63 -1.60 16 21 C -0.14 -1.65 9.19 71.98 0.66 -0.99 16 22 C -0.12 -3.11 9.70 22.27 0.22 -2.89 16 23 C -0.11 -3.60 9.70 22.27 0.22 -3.38 16 24 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.03 1.34 6.52 -2.39 -0.02 1.32 16 26 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.02 0.60 8.05 -2.39 -0.02 0.58 16 28 H 0.09 2.91 5.14 -2.38 -0.01 2.90 16 29 H -0.04 -2.50 8.00 -2.39 -0.02 -2.52 16 30 H 0.01 0.85 6.23 -2.39 -0.01 0.84 16 31 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.06 2.85 7.26 -2.39 -0.02 2.83 16 33 H 0.03 1.01 8.07 -2.39 -0.02 0.99 16 34 H 0.12 3.16 7.73 -2.91 -0.02 3.14 16 35 H 0.14 2.46 8.04 -2.91 -0.02 2.43 16 36 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 37 H 0.08 1.14 8.08 -2.38 -0.02 1.12 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.05 0.86 6.27 -2.39 -0.01 0.84 16 41 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 0.62 8.14 -2.38 -0.02 0.61 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 0.62 8.14 -2.38 -0.02 0.61 16 45 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 46 H 0.11 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -65.23 362.88 3.95 -61.28 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.91 Total: 13.45 kcal Atomic # 6 Polarization: -41.40 SS G_CDS: 4.69 Total: -36.71 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -3.67 Total: -85.24 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -65.23 3.95 -61.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349839722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.311 kcal (2) G-P(sol) polarization free energy of solvation -65.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds