Wall clock time and date at job start Mon Mar 30 2020 01:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99903 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47331 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47042 * 120.00362 * 9 7 5 12 12 H 1.48503 * 109.47111 * 240.00250 * 9 7 5 13 13 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 14 14 C 1.46903 * 111.00066 * 58.94896 * 13 2 1 15 15 C 1.46906 * 110.99440 * 294.99743 * 13 2 1 16 16 C 1.53002 * 109.46775 * 189.99607 * 15 13 2 17 17 C 1.52998 * 109.46852 * 180.02562 * 16 15 13 18 18 C 1.53004 * 109.46860 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.46953 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99945 * 269.72224 * 19 18 17 21 21 C 1.38238 * 119.99959 * 179.76317 * 20 19 18 22 22 C 1.38234 * 119.99736 * 0.51413 * 21 20 19 23 23 C 1.38237 * 120.00237 * 359.74203 * 22 21 20 24 24 C 1.38230 * 119.99974 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 29 29 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 30 30 H 0.97003 * 119.99498 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46799 * 60.00373 * 14 13 2 32 32 H 1.08995 * 109.46967 * 180.02562 * 14 13 2 33 33 H 1.09002 * 109.46933 * 300.00619 * 14 13 2 34 34 H 1.08996 * 109.47414 * 309.99759 * 15 13 2 35 35 H 1.08997 * 109.46846 * 70.00181 * 15 13 2 36 36 H 1.08996 * 109.47273 * 300.00238 * 16 15 13 37 37 H 1.09002 * 109.46899 * 60.00168 * 16 15 13 38 38 H 1.09003 * 109.47130 * 299.99738 * 17 16 15 39 39 H 1.08994 * 109.47577 * 60.00080 * 17 16 15 40 40 H 1.08996 * 109.46949 * 299.99866 * 18 17 16 41 41 H 1.09002 * 109.47215 * 59.99791 * 18 17 16 42 42 H 1.07997 * 120.00245 * 0.02562 * 20 19 18 43 43 H 1.07995 * 120.00031 * 180.23065 * 21 20 19 44 44 H 1.08001 * 119.99888 * 179.71538 * 22 21 20 45 45 H 1.07999 * 120.00286 * 179.97438 * 23 22 21 46 46 H 1.08001 * 120.00476 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 3.5764 -1.8380 -3.2994 9 14 6.0922 -1.0625 -2.4361 10 1 6.5839 -0.2929 -1.2651 11 1 6.6855 -2.4237 -2.4179 12 1 6.4872 -0.3670 -3.6873 13 7 2.0197 -0.6926 1.1994 14 6 1.5283 -2.0762 1.2460 15 6 1.6487 0.0392 2.4181 16 6 2.3789 -0.5662 3.6186 17 6 1.9920 0.1954 4.8879 18 6 2.7227 -0.4096 6.0883 19 6 2.3421 0.3410 7.3384 20 6 3.0839 1.4364 7.7397 21 6 2.7319 2.1279 8.8838 22 6 1.6446 1.7176 9.6323 23 6 0.9061 0.6191 9.2340 24 6 1.2551 -0.0695 8.0873 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -1.7716 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 4.0608 -2.2448 -4.0348 31 1 1.8762 -2.6151 0.3647 32 1 1.9053 -2.5656 2.1440 33 1 0.4384 -2.0742 1.2639 34 1 1.9298 1.0870 2.3125 35 1 0.5723 -0.0345 2.5726 36 1 2.0978 -1.6140 3.7242 37 1 3.4554 -0.4926 3.4641 38 1 2.2729 1.2434 4.7825 39 1 0.9156 0.1215 5.0422 40 1 2.4423 -1.4576 6.1938 41 1 3.7991 -0.3353 5.9338 42 1 3.9358 1.7545 7.1571 43 1 3.3091 2.9859 9.1952 44 1 1.3724 2.2551 10.5287 45 1 0.0568 0.2983 9.8190 46 1 0.6784 -0.9280 7.7763 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351648821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:30 Heat of formation + Delta-G solvation = 3.221016 kcal Electronic energy + Delta-G solvation = -20629.157107 eV Core-core repulsion = 17710.656107 eV Total energy + Delta-G solvation = -2918.501000 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.50645 -38.05487 -35.34166 -33.01199 -31.85884 -31.08588 -30.04371 -27.70737 -27.24571 -25.52387 -23.57253 -22.76799 -22.52596 -20.92579 -20.55947 -18.62642 -16.94749 -16.14618 -15.81601 -15.50004 -15.32830 -14.92674 -14.50613 -13.96290 -13.77870 -13.58522 -13.53475 -13.16465 -12.98226 -12.30365 -12.26108 -12.01610 -11.95012 -11.65511 -11.43781 -11.32601 -11.13565 -11.04878 -10.89268 -10.81267 -10.57485 -10.49543 -10.36613 -10.13390 -9.89737 -9.12673 -9.11805 -8.93971 -8.83904 -8.23717 -7.40019 -5.86565 -3.84150 1.16315 1.19541 3.39704 3.47079 3.53017 3.58204 4.47845 4.58647 4.64009 4.72732 4.81252 4.92596 5.00303 5.14300 5.30459 5.31393 5.43492 5.48483 5.51530 5.70365 5.74309 5.77799 5.83352 5.86170 5.90880 5.96628 6.01327 6.03546 6.10379 6.14881 6.22365 6.27626 6.30426 6.41883 6.46551 6.51592 6.60989 6.70418 6.81492 6.82151 7.02881 7.58008 7.75029 7.97505 8.07629 8.16082 8.61451 9.22496 9.77570 11.25475 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.024697 B = 0.002914 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.476433 B = 9606.665782 C =10283.331390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.068 0.932 4 C 0.027 3.973 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.049 3.951 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.516 5.516 14 C 0.024 3.976 15 C 0.054 3.946 16 C -0.116 4.116 17 C -0.110 4.110 18 C -0.083 4.083 19 C -0.075 4.075 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.130 4.130 23 C -0.120 4.120 24 C -0.119 4.119 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.020 0.980 29 H 0.017 0.983 30 H 0.256 0.744 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.014 0.986 34 H 0.065 0.935 35 H 0.023 0.977 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 4.587 23.191 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 H 0.086 0.914 4 C -0.010 4.010 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.238 5.238 14 C -0.125 4.125 15 C -0.075 4.075 16 C -0.154 4.154 17 C -0.148 4.148 18 C -0.120 4.120 19 C -0.075 4.075 20 C -0.137 4.137 21 C -0.137 4.137 22 C -0.149 4.149 23 C -0.138 4.138 24 C -0.137 4.137 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.902 4.479 22.999 23.939 hybrid contribution 0.065 0.057 -0.063 0.107 sum -4.836 4.536 22.936 23.876 Atomic orbital electron populations 1.22519 0.99955 1.01253 1.00582 1.21920 0.89938 0.98377 0.91982 0.91387 1.19239 0.96393 0.95449 0.89898 1.21229 0.91818 1.32754 1.06905 0.92066 1.25019 0.98041 0.95932 0.96022 1.69981 1.35091 1.37096 1.12393 0.86573 0.86447 0.77540 0.77649 1.19756 1.21353 1.21429 1.62121 1.59045 1.01733 1.00928 1.22425 0.96404 0.91028 1.02597 1.22091 0.96462 0.98204 0.90709 1.21621 1.01600 0.99356 0.92806 1.21529 0.99879 0.99936 0.93433 1.20666 1.01074 0.98883 0.91371 1.20027 0.95204 0.95927 0.96376 1.21117 1.00029 0.95598 0.96907 1.21155 0.97362 0.99770 0.95444 1.21124 0.96206 0.97464 1.00058 1.21141 0.99728 0.95979 0.96946 1.21089 0.97145 1.00255 0.95262 0.92638 0.94199 0.92901 0.96154 0.96430 0.93416 0.90024 0.92738 0.96734 0.91628 0.95919 0.92062 0.91010 0.91926 0.92261 0.90994 0.90774 0.85999 0.86217 0.86370 0.86269 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 8.50 37.16 0.32 -2.94 16 2 C 0.09 1.78 2.29 -67.71 -0.16 1.63 16 3 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 4 C 0.03 0.70 4.26 -27.88 -0.12 0.58 16 5 C -0.49 -13.82 8.84 -34.44 -0.30 -14.12 16 6 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 9 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 N -0.52 -9.92 4.47 -234.88 -1.05 -10.97 16 14 C 0.02 0.43 8.63 60.07 0.52 0.95 16 15 C 0.05 0.83 4.40 -3.82 -0.02 0.82 16 16 C -0.12 -1.53 5.15 -26.73 -0.14 -1.66 16 17 C -0.11 -1.19 5.20 -26.73 -0.14 -1.33 16 18 C -0.08 -0.81 5.35 -27.88 -0.15 -0.96 16 19 C -0.08 -0.76 5.13 -104.62 -0.54 -1.29 16 20 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 21 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 22 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 23 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 24 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.63 6.75 -51.93 -0.35 0.27 16 27 H 0.05 0.93 6.38 -51.93 -0.33 0.60 16 28 H 0.02 0.55 6.17 -51.93 -0.32 0.23 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.08 1.71 6.22 -51.93 -0.32 1.39 16 32 H 0.05 0.87 6.30 -51.93 -0.33 0.54 16 33 H 0.01 0.24 6.28 -51.93 -0.33 -0.08 16 34 H 0.07 1.02 8.00 -51.93 -0.42 0.61 16 35 H 0.02 0.34 6.94 -51.93 -0.36 -0.02 16 36 H 0.06 0.80 6.47 -51.93 -0.34 0.46 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -30.57 362.12 -10.78 -41.34 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -8.12 Total: -1.87 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -2.78 Total: -24.45 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.31 Total: -37.67 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.57 -10.78 -41.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351648821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.563 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds