Wall clock time and date at job start Mon Mar 30 2020 01:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99903 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47331 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47042 * 120.00362 * 9 7 5 12 12 H 1.48503 * 109.47111 * 240.00250 * 9 7 5 13 13 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 14 14 C 1.46903 * 111.00066 * 58.94896 * 13 2 1 15 15 C 1.46906 * 110.99440 * 294.99743 * 13 2 1 16 16 C 1.53002 * 109.46775 * 189.99607 * 15 13 2 17 17 C 1.52998 * 109.46852 * 180.02562 * 16 15 13 18 18 C 1.53004 * 109.46860 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.46953 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99945 * 269.72224 * 19 18 17 21 21 C 1.38238 * 119.99959 * 179.76317 * 20 19 18 22 22 C 1.38234 * 119.99736 * 0.51413 * 21 20 19 23 23 C 1.38237 * 120.00237 * 359.74203 * 22 21 20 24 24 C 1.38230 * 119.99974 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 29 29 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 30 30 H 0.97003 * 119.99498 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46799 * 60.00373 * 14 13 2 32 32 H 1.08995 * 109.46967 * 180.02562 * 14 13 2 33 33 H 1.09002 * 109.46933 * 300.00619 * 14 13 2 34 34 H 1.08996 * 109.47414 * 309.99759 * 15 13 2 35 35 H 1.08997 * 109.46846 * 70.00181 * 15 13 2 36 36 H 1.08996 * 109.47273 * 300.00238 * 16 15 13 37 37 H 1.09002 * 109.46899 * 60.00168 * 16 15 13 38 38 H 1.09003 * 109.47130 * 299.99738 * 17 16 15 39 39 H 1.08994 * 109.47577 * 60.00080 * 17 16 15 40 40 H 1.08996 * 109.46949 * 299.99866 * 18 17 16 41 41 H 1.09002 * 109.47215 * 59.99791 * 18 17 16 42 42 H 1.07997 * 120.00245 * 0.02562 * 20 19 18 43 43 H 1.07995 * 120.00031 * 180.23065 * 21 20 19 44 44 H 1.08001 * 119.99888 * 179.71538 * 22 21 20 45 45 H 1.07999 * 120.00286 * 179.97438 * 23 22 21 46 46 H 1.08001 * 120.00476 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 3.5764 -1.8380 -3.2994 9 14 6.0922 -1.0625 -2.4361 10 1 6.5839 -0.2929 -1.2651 11 1 6.6855 -2.4237 -2.4179 12 1 6.4872 -0.3670 -3.6873 13 7 2.0197 -0.6926 1.1994 14 6 1.5283 -2.0762 1.2460 15 6 1.6487 0.0392 2.4181 16 6 2.3789 -0.5662 3.6186 17 6 1.9920 0.1954 4.8879 18 6 2.7227 -0.4096 6.0883 19 6 2.3421 0.3410 7.3384 20 6 3.0839 1.4364 7.7397 21 6 2.7319 2.1279 8.8838 22 6 1.6446 1.7176 9.6323 23 6 0.9061 0.6191 9.2340 24 6 1.2551 -0.0695 8.0873 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -1.7716 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 4.0608 -2.2448 -4.0348 31 1 1.8762 -2.6151 0.3647 32 1 1.9053 -2.5656 2.1440 33 1 0.4384 -2.0742 1.2639 34 1 1.9298 1.0870 2.3125 35 1 0.5723 -0.0345 2.5726 36 1 2.0978 -1.6140 3.7242 37 1 3.4554 -0.4926 3.4641 38 1 2.2729 1.2434 4.7825 39 1 0.9156 0.1215 5.0422 40 1 2.4423 -1.4576 6.1938 41 1 3.7991 -0.3353 5.9338 42 1 3.9358 1.7545 7.1571 43 1 3.3091 2.9859 9.1952 44 1 1.3724 2.2551 10.5287 45 1 0.0568 0.2983 9.8190 46 1 0.6784 -0.9280 7.7763 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351648821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:30 Heat of formation + Delta-G solvation = -11.909892 kcal Electronic energy + Delta-G solvation = -20629.813232 eV Core-core repulsion = 17710.656107 eV Total energy + Delta-G solvation = -2919.157126 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.18690 -39.52054 -36.37637 -34.89478 -33.20200 -31.72626 -31.36290 -29.29215 -28.65964 -26.79568 -25.27878 -23.86111 -23.41516 -21.82850 -21.60696 -20.25386 -18.35822 -17.58430 -16.98093 -16.70172 -16.53193 -16.02341 -15.87792 -15.37533 -15.01942 -14.57972 -14.29534 -14.20881 -14.10167 -13.95792 -13.64385 -13.45350 -13.03931 -12.98932 -12.93315 -12.70361 -12.47496 -12.32046 -12.26968 -12.07722 -12.04102 -11.78425 -11.67063 -11.50298 -11.29734 -11.07357 -10.93732 -10.47603 -9.78518 -9.53805 -8.87193 -8.09564 -6.14381 0.49404 0.53606 1.41559 1.42508 1.55966 2.48057 2.90709 3.16396 3.29444 3.88055 3.95660 4.08200 4.16662 4.21539 4.23896 4.32631 4.39652 4.41254 4.50056 4.56653 4.59558 4.67933 4.69726 4.73963 4.80687 4.86921 4.94405 4.98022 5.01332 5.14086 5.17553 5.22232 5.22649 5.24225 5.32075 5.41456 5.50637 5.53216 5.62340 5.66343 5.72908 5.79926 5.91154 6.17649 6.34452 6.48409 6.57339 6.99842 7.51542 9.02641 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.024697 B = 0.002914 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.476433 B = 9606.665782 C =10283.331390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.093 3.907 3 H 0.061 0.939 4 C 0.033 3.967 5 C -0.498 4.498 6 H 0.057 0.943 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.957 3.043 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.538 5.538 14 C 0.030 3.970 15 C 0.057 3.943 16 C -0.108 4.108 17 C -0.099 4.099 18 C -0.077 4.077 19 C -0.090 4.090 20 C -0.134 4.134 21 C -0.128 4.128 22 C -0.137 4.137 23 C -0.127 4.127 24 C -0.132 4.132 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.000 1.000 29 H -0.010 1.010 30 H 0.258 0.742 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.126 0.874 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.524 5.203 25.378 26.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.015 4.015 3 H 0.079 0.921 4 C -0.004 4.004 5 C -0.537 4.537 6 H 0.075 0.925 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.783 3.217 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.261 5.261 14 C -0.118 4.118 15 C -0.071 4.071 16 C -0.145 4.145 17 C -0.137 4.137 18 C -0.115 4.115 19 C -0.090 4.090 20 C -0.152 4.152 21 C -0.146 4.146 22 C -0.155 4.155 23 C -0.145 4.145 24 C -0.150 4.150 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.018 0.982 29 H 0.008 0.992 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.144 0.856 43 H 0.154 0.846 44 H 0.157 0.843 45 H 0.156 0.844 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.972 5.104 25.203 26.191 hybrid contribution 0.059 -0.122 -0.705 0.718 sum -4.913 4.981 24.499 25.478 Atomic orbital electron populations 1.22378 0.97360 1.01608 1.01907 1.21624 0.91982 0.97175 0.90765 0.92068 1.19100 0.95273 0.94555 0.91487 1.21518 0.93258 1.32276 1.06627 0.92503 1.25871 1.02962 0.95665 0.95739 1.70106 1.37012 1.38079 1.13080 0.85507 0.80580 0.77671 0.77918 1.18934 1.20883 1.20796 1.62020 1.60025 1.02389 1.01679 1.22322 0.97260 0.90340 1.01838 1.22144 0.97502 0.97794 0.89672 1.21537 1.00415 0.99747 0.92846 1.21406 1.00228 0.99415 0.92626 1.20592 1.00807 0.99099 0.90977 1.20102 0.95834 0.96365 0.96689 1.21310 1.00433 0.95911 0.97568 1.21439 0.97735 1.00239 0.95209 1.21456 0.95868 0.97470 1.00657 1.21449 1.00306 0.95909 0.96870 1.21305 0.97214 1.00805 0.95654 0.92577 0.91581 0.92990 0.98198 0.99168 0.93285 0.93702 0.90554 0.95273 0.91791 0.94615 0.91682 0.92362 0.92199 0.91765 0.90482 0.90952 0.85599 0.84568 0.84313 0.84376 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.93 8.50 71.98 0.61 -5.32 16 2 C 0.09 3.86 2.29 44.91 0.10 3.96 16 3 H 0.06 2.60 8.03 -2.39 -0.02 2.58 16 4 C 0.03 1.74 4.26 29.85 0.13 1.87 16 5 C -0.50 -28.72 8.84 25.60 0.23 -28.50 16 6 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 7 C -0.01 -0.39 5.46 84.65 0.46 0.08 16 8 N -0.94 -58.26 13.29 21.45 0.28 -57.98 16 9 Si 0.96 45.96 29.54 68.60 2.03 47.99 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 13 N -0.54 -20.34 4.47 -897.02 -4.01 -24.35 16 14 C 0.03 1.08 8.63 127.69 1.10 2.19 16 15 C 0.06 1.65 4.40 86.30 0.38 2.03 16 16 C -0.11 -2.65 5.15 30.59 0.16 -2.49 16 17 C -0.10 -1.96 5.20 30.60 0.16 -1.81 16 18 C -0.08 -1.40 5.35 29.85 0.16 -1.24 16 19 C -0.09 -1.68 5.13 -19.86 -0.10 -1.78 16 20 C -0.13 -2.44 9.70 22.27 0.22 -2.22 16 21 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 22 C -0.14 -2.03 10.05 22.27 0.22 -1.80 16 23 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 24 C -0.13 -2.27 9.70 22.27 0.22 -2.06 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 1.91 6.75 -2.39 -0.02 1.89 16 27 H 0.05 1.77 6.38 -2.38 -0.02 1.76 16 28 H 0.00 -0.01 6.17 -2.39 -0.01 -0.03 16 29 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 30 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.04 1.92 6.22 -2.38 -0.01 1.90 16 32 H 0.08 2.34 6.30 -2.39 -0.02 2.32 16 33 H 0.03 0.94 6.28 -2.39 -0.01 0.92 16 34 H 0.06 1.89 8.00 -2.39 -0.02 1.87 16 35 H 0.04 0.97 6.94 -2.39 -0.02 0.95 16 36 H 0.06 1.55 6.47 -2.39 -0.02 1.54 16 37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 41 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 42 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 43 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 44 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 45 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 46 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -65.89 362.12 3.71 -62.18 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.91 Total: 12.81 kcal Atomic # 6 Polarization: -45.14 SS G_CDS: 4.49 Total: -40.65 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -3.72 Total: -82.33 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -65.89 3.71 -62.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351648821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.274 kcal (2) G-P(sol) polarization free energy of solvation -65.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds