Wall clock time and date at job start Mon Mar 30 2020 01:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47083 * 2 1 4 4 C 1.53002 * 109.47058 * 119.99936 * 2 1 3 5 5 C 1.50700 * 109.47147 * 175.00271 * 4 2 1 6 6 C 1.38255 * 119.99935 * 270.01710 * 5 4 2 7 7 C 1.38208 * 120.00344 * 179.97438 * 6 5 4 8 8 C 1.38260 * 119.99654 * 359.74321 * 7 6 5 9 9 C 1.38210 * 119.99838 * 0.51330 * 8 7 6 10 10 C 1.50703 * 119.99845 * 179.76392 * 9 8 7 11 11 H 1.08999 * 109.47040 * 199.73034 * 10 9 8 12 12 C 1.52997 * 109.47440 * 79.72668 * 10 9 8 13 13 N 1.46906 * 109.46953 * 319.72573 * 10 9 8 14 14 C 1.46902 * 110.99573 * 205.00087 * 13 10 9 15 15 C 1.53008 * 109.46622 * 179.97438 * 14 13 10 16 16 C 1.50698 * 109.46668 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00437 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99761 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00064 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00079 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47159 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47022 * 119.99540 * 20 18 16 23 23 H 1.48496 * 109.47179 * 239.99748 * 20 18 16 24 24 C 1.38211 * 120.00405 * 89.99871 * 5 4 2 25 25 H 1.09001 * 109.47660 * 300.00260 * 1 2 3 26 26 H 1.09004 * 109.47169 * 60.00221 * 1 2 3 27 27 H 1.09005 * 109.47641 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47660 * 239.99739 * 2 1 3 29 29 H 1.09000 * 109.47036 * 59.99941 * 3 2 1 30 30 H 1.09003 * 109.47046 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47027 * 299.99622 * 3 2 1 32 32 H 1.08993 * 109.47339 * 54.99619 * 4 2 1 33 33 H 1.09005 * 109.46821 * 295.00136 * 4 2 1 34 34 H 1.08005 * 120.00170 * 0.02562 * 6 5 4 35 35 H 1.08003 * 120.00032 * 180.02562 * 7 6 5 36 36 H 1.08003 * 119.99847 * 180.27865 * 8 7 6 37 37 H 1.09002 * 109.46897 * 59.99415 * 12 10 9 38 38 H 1.08994 * 109.47330 * 180.02562 * 12 10 9 39 39 H 1.09005 * 109.46664 * 300.00064 * 12 10 9 40 40 H 1.00896 * 111.00309 * 81.04499 * 13 10 9 41 41 H 1.08990 * 109.47358 * 299.99539 * 14 13 10 42 42 H 1.09004 * 109.47457 * 60.00221 * 14 13 10 43 43 H 1.09006 * 109.47203 * 299.99590 * 15 14 13 44 44 H 1.08995 * 109.47152 * 60.00028 * 15 14 13 45 45 H 0.97002 * 120.00167 * 179.97438 * 19 18 16 46 46 H 1.08005 * 119.99518 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.8293 1.1890 6 6 4.1324 -1.9291 0.5947 7 6 5.5098 -2.0281 0.5389 8 6 6.2971 -1.0247 1.0726 9 6 5.7067 0.0722 1.6714 10 6 6.5649 1.1634 2.2579 11 1 5.9786 1.7431 2.9708 12 6 7.0590 2.0813 1.1380 13 7 7.7174 0.5643 2.9443 14 6 8.2308 1.4593 3.9899 15 6 9.4273 0.8023 4.6812 16 6 9.9536 1.7201 5.7543 17 1 9.4822 2.6765 5.9258 18 6 11.0377 1.3393 6.5164 19 7 11.6121 0.1748 6.3072 20 14 11.6906 2.4773 7.8462 21 1 10.8754 3.7181 7.8799 22 1 11.6110 1.7962 9.1634 23 1 13.1046 2.8224 7.5519 24 6 4.3289 0.1711 1.7274 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6053 -1.7197 1.2953 33 1 1.7515 -0.1582 2.1370 34 1 3.5174 -2.7106 0.1733 35 1 5.9711 -2.8871 0.0743 36 1 7.3735 -1.0998 1.0250 37 1 6.2038 2.5256 0.6287 38 1 7.6800 2.8702 1.5621 39 1 7.6453 1.5014 0.4251 40 1 8.4437 0.3218 2.2872 41 1 8.5431 2.4018 3.5404 42 1 7.4469 1.6486 4.7233 43 1 9.1146 -0.1402 5.1309 44 1 10.2113 0.6126 3.9481 45 1 12.3750 -0.0930 6.8431 46 1 3.8675 1.0302 2.1917 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353676838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:23 Heat of formation + Delta-G solvation = -28.872501 kcal Electronic energy + Delta-G solvation = -20766.690442 eV Core-core repulsion = 17846.797762 eV Total energy + Delta-G solvation = -2919.892680 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.68827 -38.30659 -36.82391 -35.32952 -33.30554 -32.10889 -30.86010 -29.28647 -27.97438 -27.27623 -26.13076 -24.27100 -23.05734 -22.31713 -21.44619 -20.30361 -18.50771 -17.56556 -16.69776 -16.57358 -16.23867 -16.00155 -15.65987 -15.21769 -15.06041 -14.84210 -14.37553 -14.19686 -14.13990 -14.02033 -13.34864 -13.31064 -13.07129 -12.98094 -12.95888 -12.86946 -12.63444 -12.45869 -12.43137 -12.11427 -11.98532 -11.79007 -11.64843 -11.51766 -11.43240 -11.35378 -11.16438 -10.58026 -9.61461 -9.39570 -9.22706 -8.21049 -6.32549 0.55416 0.58318 1.39734 1.40336 1.53649 2.39867 2.89849 3.12402 3.36772 3.83302 3.89191 4.03455 4.07213 4.14975 4.22628 4.31861 4.36850 4.42432 4.50628 4.60973 4.64652 4.66512 4.70536 4.81733 4.84933 4.91647 4.95430 5.00778 5.06230 5.09963 5.10483 5.15346 5.24416 5.26044 5.39467 5.43981 5.47220 5.51977 5.64914 5.69355 5.72740 5.80654 5.84920 6.15328 6.21828 6.30787 6.52997 6.85034 7.36775 8.91390 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.030108 B = 0.002916 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.756269 B = 9600.528469 C = 9893.497391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.151 4.151 4 C -0.073 4.073 5 C -0.082 4.082 6 C -0.130 4.130 7 C -0.125 4.125 8 C -0.121 4.121 9 C -0.070 4.070 10 C 0.120 3.880 11 H 0.078 0.922 12 C -0.167 4.167 13 N -0.689 5.689 14 C 0.087 3.913 15 C 0.032 3.968 16 C -0.543 4.543 17 H 0.061 0.939 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.968 3.032 21 H -0.261 1.261 22 H -0.278 1.278 23 H -0.277 1.277 24 C -0.121 4.121 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.338 0.662 41 H 0.023 0.977 42 H 0.055 0.945 43 H -0.008 1.008 44 H -0.009 1.009 45 H 0.264 0.736 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.025 -0.323 -15.481 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.208 4.208 4 C -0.110 4.110 5 C -0.082 4.082 6 C -0.148 4.148 7 C -0.143 4.143 8 C -0.139 4.139 9 C -0.071 4.071 10 C 0.010 3.990 11 H 0.096 0.904 12 C -0.226 4.226 13 N -0.320 5.320 14 C -0.042 4.042 15 C -0.005 4.005 16 C -0.581 4.581 17 H 0.079 0.921 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.792 3.208 21 H -0.185 1.185 22 H -0.204 1.204 23 H -0.203 1.203 24 C -0.140 4.140 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.131 0.869 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.157 0.843 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.073 0.927 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.283 -0.780 -14.981 26.039 hybrid contribution 1.412 0.910 0.316 1.709 sum -19.872 0.130 -14.665 24.697 Atomic orbital electron populations 1.21831 0.94100 1.02191 1.02100 1.21039 0.96127 0.96070 0.97293 1.21921 1.00979 0.96113 1.01819 1.20696 0.89670 1.01821 0.98805 1.20006 0.96425 0.94113 0.97658 1.21226 0.94701 0.98421 1.00444 1.21338 0.94267 0.98858 0.99848 1.21011 0.99965 0.94361 0.98601 1.19830 0.93814 0.95893 0.97528 1.20484 0.91723 0.92324 0.94454 0.90378 1.22376 1.01956 0.99643 0.98625 1.60598 1.10648 1.44585 1.16143 1.21779 0.96556 0.93148 0.92726 1.18914 0.92194 0.95178 0.94220 1.21638 1.14338 1.03856 1.18293 0.92118 1.25997 0.96991 0.96859 1.00024 1.70119 1.23159 1.22216 1.41745 0.85360 0.78181 0.78912 0.78342 1.18518 1.20377 1.20261 1.20980 0.92422 0.99455 1.01113 0.92506 0.92244 0.92100 0.91504 0.92559 0.93314 0.92440 0.90126 0.90998 0.84472 0.84798 0.86884 0.90725 0.92827 0.92187 0.84329 0.95905 0.92657 0.98999 0.99026 0.92744 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.19 71.98 0.66 -0.95 16 2 C -0.09 -1.21 2.91 -10.80 -0.03 -1.25 16 3 C -0.15 -2.28 8.76 71.98 0.63 -1.65 16 4 C -0.07 -1.15 4.84 29.85 0.14 -1.01 16 5 C -0.08 -1.73 4.71 -19.87 -0.09 -1.82 16 6 C -0.13 -2.71 9.70 22.27 0.22 -2.49 16 7 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 8 C -0.12 -3.30 9.32 22.27 0.21 -3.10 16 9 C -0.07 -1.93 4.95 -19.87 -0.10 -2.03 16 10 C 0.12 3.53 2.79 44.17 0.12 3.65 16 11 H 0.08 2.33 7.66 -2.39 -0.02 2.31 16 12 C -0.17 -4.21 9.14 71.98 0.66 -3.56 16 13 N -0.69 -25.19 5.71 -495.43 -2.83 -28.02 16 14 C 0.09 3.72 5.42 86.31 0.47 4.19 16 15 C 0.03 1.77 5.23 29.85 0.16 1.92 16 16 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 17 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 18 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 19 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 20 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 21 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 C -0.12 -2.93 7.59 22.27 0.17 -2.76 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.87 6.27 -2.39 -0.01 0.86 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 33 H 0.07 1.14 8.09 -2.38 -0.02 1.12 16 34 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 36 H 0.11 3.15 7.26 -2.91 -0.02 3.13 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.05 1.42 7.45 -2.39 -0.02 1.40 16 39 H 0.06 1.47 8.13 -2.38 -0.02 1.45 16 40 H 0.34 12.04 7.82 -89.70 -0.70 11.34 16 41 H 0.02 0.95 7.43 -2.39 -0.02 0.93 16 42 H 0.05 2.39 8.06 -2.38 -0.02 2.37 16 43 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 44 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 45 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.12 2.71 8.02 -2.91 -0.02 2.69 16 Total: -1.00 -65.21 368.75 3.83 -61.39 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.21 Total: 21.68 kcal Atomic # 6 Polarization: -48.52 SS G_CDS: 4.13 Total: -44.39 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -2.54 Total: -85.49 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -65.21 3.83 -61.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353676838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.515 kcal (2) G-P(sol) polarization free energy of solvation -65.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds