Wall clock time and date at job start Mon Mar 30 2020 02:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31379 * 1 3 3 Si 1.86799 * 119.99639 * 2 1 4 4 H 1.48505 * 109.47038 * 269.99937 * 3 2 1 5 5 H 1.48494 * 109.47210 * 30.00144 * 3 2 1 6 6 H 1.48504 * 109.46787 * 150.00197 * 3 2 1 7 7 C 1.39016 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00495 * 180.02562 * 7 2 1 9 9 N 1.36909 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00502 * 180.02562 * 9 7 2 11 11 O 1.21623 * 119.99460 * 359.97438 * 10 9 7 12 12 C 1.47408 * 120.00258 * 179.97438 * 10 9 7 13 13 C 1.40051 * 120.60270 * 0.02562 * 12 10 9 14 14 C 1.38327 * 118.34478 * 179.70544 * 13 12 10 15 15 C 1.38368 * 119.45988 * 0.53577 * 14 13 12 16 16 C 1.50703 * 119.39796 * 179.72688 * 15 14 13 17 17 F 1.39905 * 109.47157 * 184.72702 * 16 15 14 18 18 F 1.39900 * 109.47159 * 64.73003 * 16 15 14 19 19 F 1.39897 * 109.47274 * 304.72694 * 16 15 14 20 20 N 1.31898 * 121.20125 * 359.44706 * 15 14 13 21 21 C 1.32222 * 121.80293 * 0.28067 * 20 15 14 22 22 O 1.35430 * 119.79929 * 179.97438 * 21 20 15 23 23 H 0.96997 * 120.00359 * 0.02562 * 1 2 3 24 24 H 0.96996 * 119.99516 * 359.97438 * 9 7 2 25 25 H 1.08000 * 120.82603 * 359.97438 * 13 12 10 26 26 H 1.07997 * 120.27171 * 180.27854 * 14 13 12 27 27 H 0.96697 * 114.00462 * 89.99838 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4952 2.0465 -1.4001 5 1 1.4451 2.6526 0.7000 6 1 3.5453 1.4402 0.7000 7 6 2.0089 -1.2039 -0.0005 8 1 3.0889 -1.2040 -0.0001 9 7 1.3244 -2.3896 -0.0016 10 6 1.9983 -3.5568 -0.0016 11 8 3.2145 -3.5567 -0.0011 12 6 1.2613 -4.8334 -0.0022 13 6 -0.1391 -4.8482 -0.0033 14 6 -0.7830 -6.0725 -0.0100 15 6 -0.0335 -7.2356 -0.0042 16 6 -0.7365 -8.5686 -0.0053 17 9 0.2082 -9.5941 0.1100 18 9 -1.4461 -8.7206 -1.2014 19 9 -1.6240 -8.6287 1.0744 20 7 1.2850 -7.1988 -0.0032 21 6 1.9502 -6.0562 -0.0022 22 8 3.3045 -6.0658 -0.0006 23 1 -0.4850 0.8400 -0.0004 24 1 0.3545 -2.3896 -0.0016 25 1 -0.7023 -3.9267 -0.0033 26 1 -1.8619 -6.1201 -0.0156 27 1 3.6988 -6.0684 -0.8835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355709203.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:56 Heat of formation + Delta-G solvation = -186.672459 kcal Electronic energy + Delta-G solvation = -20805.325269 eV Core-core repulsion = 16727.974841 eV Total energy + Delta-G solvation = -4077.350429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.051 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.15064 -47.69639 -47.58594 -40.54236 -38.04990 -36.86477 -34.27117 -32.88726 -31.43718 -30.94994 -27.09589 -25.23344 -23.21657 -23.00955 -20.12177 -19.15968 -18.61264 -18.54631 -18.26447 -17.54264 -16.88351 -16.02881 -15.24674 -15.06344 -14.56314 -14.43302 -14.19913 -14.07162 -13.86274 -13.80982 -13.75641 -13.75241 -13.49032 -12.95056 -12.53158 -12.07498 -11.88020 -11.43073 -11.33890 -10.65969 -10.54293 -10.00811 -9.77727 -9.69860 -8.94460 -8.62977 -8.34743 -6.85416 -4.10994 0.46203 1.12488 2.43776 2.93673 3.07836 3.12603 3.16622 3.43033 3.79958 3.87253 4.06298 4.25221 4.39731 4.51318 4.79457 4.96704 5.01281 5.05713 5.46072 5.59705 5.97255 6.11138 6.35024 7.15704 7.54853 7.70185 7.88971 8.21146 8.78309 9.10298 9.70473 10.29978 Molecular weight = 276.05amu Principal moments of inertia in cm(-1) A = 0.034663 B = 0.004340 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.578900 B = 6449.783632 C = 7080.334057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.024 3.976 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.283 4.283 8 H 0.114 0.886 9 N -0.531 5.531 10 C 0.456 3.544 11 O -0.577 6.577 12 C -0.124 4.124 13 C -0.059 4.059 14 C -0.129 4.129 15 C 0.040 3.960 16 C 0.525 3.475 17 F -0.164 7.164 18 F -0.174 7.174 19 F -0.173 7.173 20 N -0.468 5.468 21 C 0.349 3.651 22 O -0.450 6.450 23 H 0.281 0.719 24 H 0.393 0.607 25 H 0.154 0.846 26 H 0.148 0.852 27 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.287 -9.984 -1.719 11.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.182 4.182 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.413 4.413 8 H 0.132 0.868 9 N -0.165 5.165 10 C 0.244 3.756 11 O -0.463 6.463 12 C -0.132 4.132 13 C -0.086 4.086 14 C -0.150 4.150 15 C -0.100 4.100 16 C 0.469 3.531 17 F -0.145 7.145 18 F -0.155 7.155 19 F -0.155 7.155 20 N -0.187 5.187 21 C 0.166 3.834 22 O -0.256 6.256 23 H 0.091 0.909 24 H 0.228 0.772 25 H 0.171 0.829 26 H 0.166 0.834 27 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -4.152 -10.531 -1.115 11.375 hybrid contribution -0.807 1.296 -0.449 1.591 sum -4.959 -9.235 -1.564 10.599 Atomic orbital electron populations 1.69577 1.06322 1.29494 1.46017 1.25507 0.95798 1.00554 0.96299 0.85686 0.79402 0.79524 0.78870 1.19854 1.20454 1.18861 1.20008 0.94111 0.81865 1.45279 0.86826 1.42012 1.09575 1.04891 1.59998 1.17189 0.87624 0.82455 0.88347 1.90676 1.12317 1.86174 1.57122 1.21770 0.94218 0.96453 1.00791 1.21800 0.93171 0.98540 0.95059 1.21604 1.01625 0.91689 1.00041 1.20460 0.90358 0.92307 1.06866 1.17899 0.76736 0.84650 0.73796 1.93223 1.64369 1.61347 1.95586 1.93220 1.79464 1.96173 1.46645 1.93218 1.69733 1.96726 1.55788 1.66567 1.08005 1.31492 1.12670 1.18828 0.85134 0.85368 0.94057 1.84753 1.12239 1.95081 1.33526 0.90888 0.77181 0.82851 0.83413 0.73930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.29 13.05 55.50 0.72 -20.56 15 2 C 0.02 0.57 5.50 -17.46 -0.10 0.48 15 3 Si 0.94 18.99 29.55 -169.99 -5.02 13.96 15 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 15 6 H -0.26 -5.38 7.11 56.52 0.40 -4.97 15 7 C -0.28 -7.20 9.68 -15.00 -0.15 -7.34 15 8 H 0.11 3.02 7.15 -52.49 -0.38 2.65 15 9 N -0.53 -12.44 5.23 -11.96 -0.06 -12.50 15 10 C 0.46 10.44 7.72 -12.53 -0.10 10.34 15 11 O -0.58 -14.97 14.77 -16.51 -0.24 -15.21 15 12 C -0.12 -2.34 5.90 -104.69 -0.62 -2.96 15 13 C -0.06 -0.90 9.64 -38.87 -0.37 -1.27 15 14 C -0.13 -1.73 9.57 -39.50 -0.38 -2.11 15 15 C 0.04 0.60 6.27 -82.51 -0.52 0.08 15 16 C 0.52 7.06 3.31 36.01 0.12 7.18 15 17 F -0.16 -2.39 16.84 2.25 0.04 -2.35 15 18 F -0.17 -2.19 17.28 2.25 0.04 -2.15 15 19 F -0.17 -2.20 17.16 2.25 0.04 -2.16 15 20 N -0.47 -8.10 9.73 -9.19 -0.09 -8.19 15 21 C 0.35 6.45 7.77 -16.59 -0.13 6.32 15 22 O -0.45 -8.26 11.66 -39.75 -0.46 -8.73 15 23 H 0.28 6.40 8.31 -40.82 -0.34 6.06 15 24 H 0.39 8.53 5.99 -40.82 -0.24 8.29 15 25 H 0.15 2.11 6.51 -52.49 -0.34 1.77 15 26 H 0.15 1.48 8.06 -52.49 -0.42 1.05 15 27 H 0.40 5.62 9.06 45.56 0.41 6.04 15 LS Contribution 267.04 15.07 4.02 4.02 Total: -1.00 -29.09 267.04 -3.36 -32.45 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -0.11 Total: 10.70 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -2.24 Total: 10.72 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.57 Total: -41.25 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.71 Total: -23.94 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.12 Total: -6.66 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.09 -3.36 -32.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355709203.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.225 kcal (2) G-P(sol) polarization free energy of solvation -29.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds