Wall clock time and date at job start Mon Mar 30 2020 01:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47131 * 2 1 4 4 H 1.09005 * 109.47079 * 304.27332 * 3 2 1 5 5 C 1.50698 * 109.47051 * 184.27995 * 3 2 1 6 6 H 1.08006 * 120.00159 * 240.00034 * 5 3 2 7 7 C 1.37877 * 120.00084 * 59.99772 * 5 3 2 8 8 N 1.31516 * 119.99940 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00098 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47261 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46794 * 120.00075 * 9 7 5 12 12 H 1.48495 * 109.47143 * 239.99739 * 9 7 5 13 13 N 1.46897 * 109.47544 * 64.27964 * 3 2 1 14 14 C 1.46897 * 111.00353 * 205.84737 * 13 3 2 15 15 C 1.53002 * 109.47394 * 174.81701 * 14 13 3 16 16 H 1.08997 * 109.46712 * 54.99828 * 15 14 13 17 17 C 1.52999 * 109.46998 * 295.00147 * 15 14 13 18 18 C 1.52991 * 109.47052 * 175.00062 * 15 14 13 19 19 C 1.53001 * 109.47152 * 185.00295 * 18 15 14 20 20 C 1.50703 * 109.47339 * 180.02562 * 19 18 15 21 21 C 1.38237 * 119.99653 * 269.72157 * 20 19 18 22 22 C 1.38234 * 120.00172 * 179.76506 * 21 20 19 23 23 C 1.38242 * 119.99619 * 0.50867 * 22 21 20 24 24 C 1.38234 * 120.00115 * 359.74576 * 23 22 21 25 25 C 1.38234 * 120.00255 * 89.99812 * 20 19 18 26 26 H 1.08995 * 109.47421 * 174.88107 * 1 2 3 27 27 H 1.09002 * 109.47208 * 294.88064 * 1 2 3 28 28 H 1.09000 * 109.46767 * 54.87488 * 1 2 3 29 29 H 1.09000 * 109.47109 * 239.99720 * 2 1 3 30 30 H 1.09005 * 109.46806 * 120.00062 * 2 1 3 31 31 H 0.97003 * 119.99937 * 179.97438 * 8 7 5 32 32 H 1.00903 * 110.99969 * 81.88763 * 13 3 2 33 33 H 1.09005 * 109.47212 * 54.81325 * 14 13 3 34 34 H 1.09002 * 109.47016 * 294.82221 * 14 13 3 35 35 H 1.08997 * 109.47047 * 59.99969 * 17 15 14 36 36 H 1.08996 * 109.47008 * 179.97438 * 17 15 14 37 37 H 1.09007 * 109.47064 * 299.99944 * 17 15 14 38 38 H 1.09000 * 109.47464 * 64.99816 * 18 15 14 39 39 H 1.09007 * 109.47388 * 305.00000 * 18 15 14 40 40 H 1.09008 * 109.46486 * 299.99619 * 19 18 15 41 41 H 1.09000 * 109.47327 * 59.99437 * 19 18 15 42 42 H 1.08002 * 119.99731 * 0.02562 * 21 20 19 43 43 H 1.07999 * 120.00290 * 180.23465 * 22 21 20 44 44 H 1.07993 * 119.99787 * 179.72057 * 23 22 21 45 45 H 1.07994 * 120.00320 * 179.97438 * 24 23 22 46 46 H 1.07993 * 120.00011 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6155 1.9779 -0.8493 5 6 3.5433 1.4438 -0.1060 6 1 4.1394 1.8916 0.6754 7 6 4.1577 0.8732 -1.2006 8 7 3.4318 0.3283 -2.1523 9 14 6.0211 0.8742 -1.3317 10 1 6.6009 1.5433 -0.1395 11 1 6.5131 -0.5253 -1.4015 12 1 6.4307 1.6046 -2.5580 13 7 1.6366 2.1045 1.2477 14 6 1.5404 3.5589 1.0647 15 6 0.9953 4.1989 2.3431 16 1 1.6177 3.9075 3.1891 17 6 -0.4401 3.7247 2.5788 18 6 1.0121 5.7218 2.1982 19 6 0.5854 6.3646 3.5194 20 6 0.6012 7.8647 3.3766 21 6 1.7489 8.5753 3.6747 22 6 1.7651 9.9508 3.5390 23 6 0.6303 10.6169 3.1152 24 6 -0.5190 9.9069 2.8221 25 6 -0.5335 8.5308 2.9528 26 1 -0.3634 -1.0235 -0.0917 27 1 -0.3634 0.4324 0.9323 28 1 -0.3633 0.5913 -0.8405 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8640 -0.0728 -2.9225 32 1 2.2695 1.8757 1.9995 33 1 0.8688 3.7770 0.2343 34 1 2.5290 3.9641 0.8485 35 1 -0.4520 2.6397 2.6820 36 1 -0.8283 4.1803 3.4897 37 1 -1.0626 4.0161 1.7326 38 1 0.3211 6.0194 1.4095 39 1 2.0191 6.0515 1.9424 40 1 -0.4217 6.0350 3.7752 41 1 1.2763 6.0670 4.3082 42 1 2.6343 8.0552 4.0096 43 1 2.6629 10.5056 3.7683 44 1 0.6416 11.6920 3.0135 45 1 -1.4056 10.4272 2.4914 46 1 -1.4314 7.9761 2.7238 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358283320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:51 Heat of formation + Delta-G solvation = -12.269040 kcal Electronic energy + Delta-G solvation = -20825.349821 eV Core-core repulsion = 17906.177122 eV Total energy + Delta-G solvation = -2919.172700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.44288 -37.20550 -35.35430 -32.96865 -31.69210 -30.99846 -30.46986 -28.06354 -26.53395 -25.19020 -23.32937 -22.67837 -22.19807 -20.79794 -19.88085 -19.12551 -16.88282 -16.60427 -15.51332 -15.33663 -14.86472 -14.52292 -14.27374 -13.98615 -13.60221 -13.44707 -13.25213 -12.93376 -12.75809 -12.60567 -11.95309 -11.85000 -11.75949 -11.39417 -11.21400 -11.17685 -11.14428 -11.03003 -10.84975 -10.62142 -10.43701 -10.28847 -10.21496 -10.04179 -9.56067 -9.38100 -9.03841 -9.01259 -8.72507 -8.36507 -7.17541 -5.97767 -4.10738 1.25525 1.28319 3.26334 3.34868 3.38030 3.67326 4.40509 4.66955 4.73054 4.87073 4.99476 5.12044 5.13442 5.27722 5.36411 5.38999 5.43827 5.56541 5.69505 5.77615 5.87772 5.92357 5.98412 6.10119 6.16862 6.23811 6.35323 6.38344 6.38848 6.43362 6.44673 6.53170 6.57914 6.66542 6.73637 6.81582 6.83670 6.91303 7.17728 7.20406 7.48201 7.63072 7.80074 8.12655 8.19408 8.37832 8.71616 9.03351 9.56882 11.02054 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.019702 B = 0.003358 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.870261 B = 8336.134018 C = 9341.113490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.687 5.687 14 C 0.072 3.928 15 C -0.088 4.088 16 H 0.063 0.937 17 C -0.135 4.135 18 C -0.107 4.107 19 C -0.083 4.083 20 C -0.074 4.074 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.023 0.977 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.089 0.911 30 H 0.029 0.971 31 H 0.260 0.740 32 H 0.325 0.675 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.067 0.933 36 H 0.040 0.960 37 H 0.046 0.954 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.045 15.172 10.743 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.316 5.316 14 C -0.058 4.058 15 C -0.107 4.107 16 H 0.082 0.918 17 C -0.192 4.192 18 C -0.145 4.145 19 C -0.120 4.120 20 C -0.074 4.074 21 C -0.137 4.137 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.138 4.138 25 C -0.137 4.137 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.141 0.859 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.712 14.962 10.443 19.809 hybrid contribution 2.118 0.306 -0.330 2.165 sum -5.595 15.268 10.113 19.149 Atomic orbital electron populations 1.21680 0.99027 0.98165 1.00346 1.21491 0.92053 0.99321 1.01565 1.19133 0.92586 0.91121 0.86474 0.95197 1.21923 0.92841 1.37749 1.05746 0.92892 1.24941 0.97917 0.95055 0.95693 1.69893 1.34733 1.38219 1.09523 0.86614 0.86188 0.77718 0.77908 1.19956 1.20968 1.21064 1.60866 1.54977 1.06184 1.09570 1.21781 0.98399 0.90052 0.95544 1.21159 0.97463 0.93187 0.98846 0.91837 1.21731 0.95458 1.02289 0.99745 1.21591 1.01518 0.95214 0.96143 1.20722 1.02679 0.89798 0.98785 1.20049 0.93514 0.96162 0.97663 1.21107 0.97906 0.94120 1.00591 1.21145 0.98228 0.94586 0.99805 1.21110 0.93495 0.99714 1.00619 1.21139 0.98162 0.94350 1.00145 1.21089 0.98196 0.94345 1.00074 0.95775 0.93461 0.94539 0.89304 0.95170 0.92985 0.85926 0.92398 0.95779 0.91362 0.94126 0.93502 0.91986 0.92084 0.90710 0.91135 0.86102 0.86289 0.86423 0.86293 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.73 37.16 0.36 -2.43 16 2 C -0.11 -2.54 5.45 -26.73 -0.15 -2.69 16 3 C 0.21 5.31 1.98 -68.87 -0.14 5.17 16 4 H 0.03 0.83 7.70 -51.93 -0.40 0.43 16 5 C -0.54 -14.69 8.47 -34.44 -0.29 -14.99 16 6 H 0.05 1.43 7.73 -52.48 -0.41 1.02 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.89 -25.16 11.30 55.43 0.63 -24.53 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 13 N -0.69 -14.16 5.19 -107.95 -0.56 -14.72 16 14 C 0.07 1.34 4.90 -3.82 -0.02 1.32 16 15 C -0.09 -1.26 2.57 -90.62 -0.23 -1.49 16 16 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 17 C -0.13 -1.84 8.84 37.16 0.33 -1.51 16 18 C -0.11 -1.35 4.66 -26.73 -0.12 -1.47 16 19 C -0.08 -0.89 5.10 -27.88 -0.14 -1.04 16 20 C -0.07 -0.82 5.13 -104.62 -0.54 -1.35 16 21 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 23 C -0.13 -1.24 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 25 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.93 7.88 -51.93 -0.41 0.52 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.33 6.68 8.45 -39.29 -0.33 6.34 16 33 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 34 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 35 H 0.07 1.03 7.75 -51.93 -0.40 0.63 16 36 H 0.04 0.47 6.57 -51.93 -0.34 0.13 16 37 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.76 6.51 -51.92 -0.34 0.43 16 41 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 367.29 15.07 5.54 5.54 Total: -1.00 -28.01 367.29 -10.81 -38.82 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -8.40 Total: 5.48 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -3.00 Total: -26.80 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.07 Total: -39.25 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.01 -10.81 -38.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358283320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.552 kcal (2) G-P(sol) polarization free energy of solvation -28.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds