Wall clock time and date at job start Mon Mar 30 2020 01:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47010 * 2 1 4 4 H 1.08993 * 109.46851 * 177.90470 * 3 2 1 5 5 C 1.50706 * 109.47114 * 57.90458 * 3 2 1 6 6 H 1.07998 * 120.00219 * 240.00243 * 5 3 2 7 7 C 1.37876 * 119.99643 * 60.00232 * 5 3 2 8 8 N 1.31516 * 120.00350 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99934 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47362 * 59.99723 * 9 7 5 11 11 H 1.48503 * 109.47496 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47337 * 300.00072 * 9 7 5 13 13 N 1.46895 * 109.46826 * 297.90690 * 3 2 1 14 14 C 1.46896 * 111.00246 * 273.92399 * 13 3 2 15 15 C 1.52994 * 109.47508 * 175.13694 * 14 13 3 16 16 H 1.09000 * 109.46934 * 304.99962 * 15 14 13 17 17 C 1.53001 * 109.47178 * 64.99636 * 15 14 13 18 18 C 1.53004 * 109.47375 * 184.99782 * 15 14 13 19 19 C 1.52998 * 109.46906 * 175.00077 * 18 15 14 20 20 C 1.50705 * 109.46753 * 180.02562 * 19 18 15 21 21 C 1.38244 * 119.99614 * 269.72242 * 20 19 18 22 22 C 1.38230 * 119.99718 * 179.76496 * 21 20 19 23 23 C 1.38235 * 120.00303 * 0.51058 * 22 21 20 24 24 C 1.38241 * 119.99582 * 359.74448 * 23 22 21 25 25 C 1.38225 * 120.00270 * 0.02562 * 24 23 22 26 26 H 1.08999 * 109.47009 * 174.48374 * 1 2 3 27 27 H 1.09001 * 109.47097 * 54.48764 * 1 2 3 28 28 H 1.09002 * 109.47710 * 294.48807 * 1 2 3 29 29 H 1.09006 * 109.46933 * 119.99254 * 2 1 3 30 30 H 1.08994 * 109.47517 * 239.99664 * 2 1 3 31 31 H 0.97001 * 120.00485 * 180.02562 * 8 7 5 32 32 H 1.00905 * 110.99966 * 149.97160 * 13 3 2 33 33 H 1.09006 * 109.46730 * 295.13503 * 14 13 3 34 34 H 1.08996 * 109.47238 * 55.12966 * 14 13 3 35 35 H 1.09003 * 109.47130 * 179.97438 * 17 15 14 36 36 H 1.08995 * 109.47366 * 300.00106 * 17 15 14 37 37 H 1.09000 * 109.46922 * 60.00319 * 17 15 14 38 38 H 1.09001 * 109.47168 * 295.00022 * 18 15 14 39 39 H 1.09000 * 109.46692 * 55.00335 * 18 15 14 40 40 H 1.09001 * 109.47163 * 299.99948 * 19 18 15 41 41 H 1.08994 * 109.47648 * 60.00017 * 19 18 15 42 42 H 1.07997 * 119.99716 * 359.97438 * 21 20 19 43 43 H 1.08004 * 120.00113 * 180.22828 * 22 21 20 44 44 H 1.07999 * 120.00444 * 179.72223 * 23 22 21 45 45 H 1.08003 * 119.99620 * 179.97438 * 24 23 22 46 46 H 1.07999 * 120.00456 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1293 1.4428 0.0376 5 6 1.4956 2.1678 1.2037 6 1 0.8787 3.0445 1.0726 7 6 1.7854 1.7121 2.4723 8 7 2.5363 0.6443 2.6320 9 14 1.1113 2.6114 3.9643 10 1 -0.3729 2.6117 3.9135 11 1 1.5645 1.9266 5.2017 12 1 1.6068 4.0114 3.9642 13 7 1.5920 2.1202 -1.2239 14 6 2.5281 1.8816 -2.3306 15 6 1.9688 2.4989 -3.6138 16 1 0.9683 2.1080 -3.7990 17 6 1.9019 4.0198 -3.4611 18 6 2.8807 2.1440 -4.7901 19 6 2.2573 2.6545 -6.0907 20 6 3.1552 2.3044 -7.2493 21 6 4.1398 3.1874 -7.6521 22 6 4.9665 2.8642 -8.7117 23 6 4.8021 1.6628 -9.3753 24 6 3.8141 0.7822 -8.9759 25 6 2.9904 1.1033 -7.9133 26 1 -0.3633 -1.0229 -0.0988 27 1 -0.3633 0.5970 -0.8365 28 1 -0.3634 0.4260 0.9352 29 1 1.8933 -0.5138 0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 2.7398 0.3234 3.5245 32 1 1.4652 3.1085 -1.0643 33 1 3.4902 2.3377 -2.0973 34 1 2.6592 0.8086 -2.4706 35 1 1.5039 4.4596 -4.3756 36 1 1.2523 4.2726 -2.6232 37 1 2.9024 4.4107 -3.2760 38 1 3.8558 2.6098 -4.6473 39 1 2.9993 1.0619 -4.8442 40 1 1.2822 2.1888 -6.2335 41 1 2.1386 3.7366 -6.0366 42 1 4.2651 4.1281 -7.1367 43 1 5.7381 3.5524 -9.0240 44 1 5.4451 1.4123 -10.2061 45 1 3.6853 -0.1563 -9.4947 46 1 2.2183 0.4155 -7.6015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358283321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:53 Heat of formation + Delta-G solvation = -8.479952 kcal Electronic energy + Delta-G solvation = -20815.470200 eV Core-core repulsion = 17896.461807 eV Total energy + Delta-G solvation = -2919.008392 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.47554 -37.34402 -35.40709 -33.07329 -31.61015 -31.02611 -30.16404 -28.04749 -26.62264 -25.22058 -23.35493 -22.76797 -22.70439 -20.91068 -19.59942 -18.90230 -16.93819 -16.38974 -15.56983 -15.34988 -14.98469 -14.75094 -14.13166 -13.89117 -13.66409 -13.51994 -13.12069 -13.05155 -12.82631 -12.53515 -12.37058 -11.94621 -11.72412 -11.63804 -11.29008 -11.26290 -10.97727 -10.86555 -10.84198 -10.47940 -10.42394 -10.37820 -10.19182 -9.90627 -9.61303 -9.30691 -9.06614 -8.79335 -8.71009 -8.43584 -7.15561 -5.98882 -4.04188 1.22650 1.25636 3.31910 3.36718 3.39248 3.64530 4.42001 4.63723 4.70135 4.84430 4.96781 5.06987 5.09475 5.30353 5.32830 5.34236 5.40503 5.52377 5.60557 5.69086 5.74687 5.88518 5.92688 6.02204 6.07272 6.20394 6.25893 6.31006 6.33861 6.36233 6.42166 6.53903 6.58126 6.67800 6.74139 6.76859 6.88047 6.90541 7.28038 7.38167 7.55160 7.78140 7.83291 7.89749 8.31170 8.45475 8.73965 9.05959 9.60396 11.07131 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.034988 B = 0.002862 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.080921 B = 9780.105518 C =10040.879899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.216 3.784 4 H -0.002 1.002 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.686 5.686 14 C 0.066 3.934 15 C -0.088 4.088 16 H 0.076 0.924 17 C -0.147 4.147 18 C -0.106 4.106 19 C -0.083 4.083 20 C -0.074 4.074 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.119 4.119 25 C -0.119 4.119 26 H 0.011 0.989 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.009 0.991 31 H 0.261 0.739 32 H 0.329 0.671 33 H 0.015 0.985 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.306 3.088 -20.711 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.108 3.892 4 H 0.016 0.984 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.318 5.318 14 C -0.064 4.064 15 C -0.107 4.107 16 H 0.094 0.906 17 C -0.205 4.205 18 C -0.144 4.144 19 C -0.120 4.120 20 C -0.074 4.074 21 C -0.137 4.137 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.137 4.137 25 C -0.137 4.137 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.965 2.454 -20.724 20.961 hybrid contribution 0.539 0.912 1.118 1.540 sum 2.504 3.366 -19.606 20.050 Atomic orbital electron populations 1.21432 0.97549 0.97037 1.01546 1.21414 0.95054 0.98316 0.99179 1.19093 0.93166 0.91614 0.85325 0.98420 1.21161 1.31568 1.11909 0.90446 0.92457 1.24885 0.95122 0.95032 0.98824 1.69882 1.37452 1.23109 1.22385 0.86652 0.79445 0.79731 0.82111 1.20215 1.21373 1.20427 1.60684 1.47702 1.15970 1.07404 1.21900 0.93572 0.99610 0.91320 1.21167 0.99639 0.95688 0.94172 0.90598 1.21873 1.01472 0.95768 1.01371 1.21584 0.98966 1.01004 0.92840 1.20719 0.97507 1.01798 0.91985 1.20048 0.96580 0.94260 0.96552 1.21088 0.95691 0.99653 0.97305 1.21138 0.99321 0.97020 0.96313 1.21115 0.98737 0.94739 1.00323 1.21146 0.95848 0.99427 0.97319 1.21106 0.99879 0.96621 0.96075 0.96958 0.93441 0.93005 0.89795 0.97242 0.92953 0.85327 0.96679 0.92083 0.93194 0.92046 0.93324 0.92142 0.91949 0.90976 0.90770 0.86150 0.86304 0.86410 0.86263 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.46 37.16 0.35 -2.35 16 2 C -0.10 -2.49 5.57 -26.73 -0.15 -2.64 16 3 C 0.22 5.41 2.30 -68.86 -0.16 5.25 16 4 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 5 C -0.51 -13.82 7.33 -34.44 -0.25 -14.07 16 6 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.36 11.34 55.43 0.63 -24.73 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.69 -14.37 5.49 -107.96 -0.59 -14.96 16 14 C 0.07 1.18 4.91 -3.83 -0.02 1.16 16 15 C -0.09 -1.23 2.60 -90.62 -0.24 -1.46 16 16 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 17 C -0.15 -1.91 8.72 37.16 0.32 -1.58 16 18 C -0.11 -1.28 4.66 -26.73 -0.12 -1.40 16 19 C -0.08 -0.86 5.10 -27.88 -0.14 -1.00 16 20 C -0.07 -0.79 5.13 -104.62 -0.54 -1.33 16 21 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 22 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 23 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 25 C -0.12 -1.22 9.70 -39.59 -0.38 -1.60 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.05 1.04 7.51 -51.93 -0.39 0.66 16 28 H 0.05 1.27 7.37 -51.93 -0.38 0.89 16 29 H 0.08 2.29 6.13 -51.93 -0.32 1.97 16 30 H 0.01 0.21 7.42 -51.93 -0.39 -0.18 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.33 6.77 6.63 -39.29 -0.26 6.51 16 33 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 1.14 7.39 -51.93 -0.38 0.76 16 35 H 0.05 0.55 6.56 -51.93 -0.34 0.21 16 36 H 0.06 0.86 6.79 -51.93 -0.35 0.51 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 41 H 0.07 0.73 6.51 -51.93 -0.34 0.39 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 46 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -28.31 361.59 -10.70 -39.01 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -8.16 Total: 4.60 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -3.00 Total: -25.59 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.04 Total: -39.70 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.31 -10.70 -39.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358283321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.530 kcal (2) G-P(sol) polarization free energy of solvation -28.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds