Wall clock time and date at job start Mon Mar 30 2020 01:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46641 * 2 1 4 4 H 1.09002 * 109.47061 * 179.78460 * 3 2 1 5 5 C 1.50703 * 109.47281 * 299.77660 * 3 2 1 6 6 H 1.08004 * 119.99241 * 119.99656 * 5 3 2 7 7 C 1.37871 * 120.00130 * 300.00777 * 5 3 2 8 8 N 1.31513 * 120.00224 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99845 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47375 * 59.99484 * 9 7 5 11 11 H 1.48504 * 109.47491 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47059 * 299.99794 * 9 7 5 13 13 N 1.46890 * 109.47402 * 59.78471 * 3 2 1 14 14 C 1.46901 * 111.00601 * 84.99655 * 13 3 2 15 15 C 1.52998 * 109.47777 * 177.05005 * 14 13 3 16 16 H 1.09006 * 109.46343 * 54.99931 * 15 14 13 17 17 C 1.52999 * 109.47177 * 295.00678 * 15 14 13 18 18 C 1.52991 * 109.47185 * 175.00129 * 15 14 13 19 19 C 1.53001 * 109.46904 * 185.00295 * 18 15 14 20 20 C 1.50703 * 109.47274 * 180.02562 * 19 18 15 21 21 C 1.38244 * 119.99669 * 269.72665 * 20 19 18 22 22 C 1.38237 * 119.99612 * 179.76488 * 21 20 19 23 23 C 1.38239 * 120.00203 * 0.50175 * 22 21 20 24 24 C 1.38234 * 119.99514 * 359.75327 * 23 22 21 25 25 C 1.38231 * 120.00189 * 89.99604 * 20 19 18 26 26 H 1.08995 * 109.46810 * 295.69843 * 1 2 3 27 27 H 1.09007 * 109.46355 * 175.70625 * 1 2 3 28 28 H 1.08996 * 109.47105 * 55.70531 * 1 2 3 29 29 H 1.08998 * 109.47516 * 119.99714 * 2 1 3 30 30 H 1.08997 * 109.47030 * 240.00424 * 2 1 3 31 31 H 0.97000 * 119.99835 * 179.97438 * 8 7 5 32 32 H 1.00897 * 111.00061 * 208.95520 * 13 3 2 33 33 H 1.08998 * 109.46976 * 297.05777 * 14 13 3 34 34 H 1.09004 * 109.46501 * 57.05147 * 14 13 3 35 35 H 1.08995 * 109.47278 * 59.99281 * 17 15 14 36 36 H 1.08994 * 109.47382 * 179.97438 * 17 15 14 37 37 H 1.09006 * 109.46527 * 299.99625 * 17 15 14 38 38 H 1.09005 * 109.47394 * 305.00093 * 18 15 14 39 39 H 1.08996 * 109.47213 * 65.00467 * 18 15 14 40 40 H 1.09003 * 109.47400 * 299.99887 * 19 18 15 41 41 H 1.08998 * 109.47418 * 60.00440 * 19 18 15 42 42 H 1.07994 * 120.00202 * 359.97438 * 21 20 19 43 43 H 1.07999 * 119.99998 * 180.23062 * 22 21 20 44 44 H 1.07991 * 120.00222 * 179.72233 * 23 22 21 45 45 H 1.08002 * 119.99849 * 179.97438 * 24 23 22 46 46 H 1.08000 * 120.00071 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4427 0.0039 5 6 1.5420 2.1514 -1.2332 6 1 0.9207 3.0296 -1.1374 7 6 1.8796 1.6787 -2.4836 8 7 2.6365 0.6096 -2.6002 9 14 1.2619 2.5569 -4.0122 10 1 1.7563 3.9573 -4.0124 11 1 1.7618 1.8558 -5.2221 12 1 -0.2231 2.5563 -4.0173 13 7 1.5460 2.1365 1.1967 14 6 2.4255 1.8923 2.3477 15 6 1.9211 2.6882 3.5531 16 1 0.8774 2.4377 3.7428 17 6 2.0415 4.1854 3.2623 18 6 2.7613 2.3383 4.7829 19 6 2.1800 3.0377 6.0134 20 6 3.0079 2.6936 7.2247 21 6 2.6845 1.5903 7.9922 22 6 3.4468 1.2719 9.1006 23 6 4.5263 2.0627 9.4474 24 6 4.8464 3.1690 8.6829 25 6 4.0873 3.4845 7.5715 26 1 -0.3633 0.4456 0.9260 27 1 -0.3632 -1.0249 -0.0769 28 1 -0.3633 0.5790 -0.8490 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 2.8737 0.2768 -3.4800 32 1 1.4422 3.1253 1.0244 33 1 2.4232 0.8290 2.5875 34 1 3.4399 2.2073 2.1030 35 1 1.4430 4.4346 2.3861 36 1 1.6818 4.7524 4.1208 37 1 3.0853 4.4358 3.0725 38 1 2.7472 1.2594 4.9377 39 1 3.7880 2.6697 4.6278 40 1 2.1941 4.1166 5.8587 41 1 1.1533 2.7063 6.1686 42 1 1.8383 0.9752 7.7240 43 1 3.1964 0.4078 9.6981 44 1 5.1191 1.8166 10.3159 45 1 5.6895 3.7872 8.9540 46 1 4.3371 4.3492 6.9746 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358283323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:57 Heat of formation + Delta-G solvation = -21.459248 kcal Electronic energy + Delta-G solvation = -20814.781695 eV Core-core repulsion = 17895.210478 eV Total energy + Delta-G solvation = -2919.571217 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21752 -38.80363 -36.94189 -34.48610 -33.24839 -31.75773 -31.71759 -29.10945 -28.33081 -26.64152 -25.14892 -24.10101 -23.40858 -21.78201 -20.88304 -20.76034 -18.38967 -17.58572 -16.95048 -16.50574 -16.19709 -15.98494 -15.56976 -15.35101 -15.00639 -14.68583 -14.27116 -14.15726 -14.05504 -13.82277 -13.67556 -13.49532 -13.18747 -12.81802 -12.72852 -12.67619 -12.42184 -12.30124 -12.14414 -11.99463 -11.82648 -11.72027 -11.45576 -11.39878 -11.31360 -11.15185 -10.76448 -10.52074 -9.77851 -9.52335 -8.96101 -8.08948 -6.21705 0.50127 0.54255 1.42743 1.44185 1.51446 2.42942 2.91825 3.19360 3.61323 3.93391 3.95159 4.08900 4.13712 4.20736 4.30303 4.37117 4.43183 4.64225 4.65845 4.70735 4.71628 4.76907 4.78901 4.82291 4.90766 4.96747 5.01429 5.13421 5.16859 5.21084 5.24572 5.25003 5.30966 5.41380 5.53090 5.54148 5.59926 5.63202 5.66724 5.71921 5.81180 5.83423 5.90903 6.18458 6.29372 6.53446 6.83840 7.06936 7.47334 8.96085 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.034732 B = 0.002866 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.983104 B = 9767.679759 C =10040.999407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C 0.221 3.779 4 H -0.042 1.042 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.015 3.985 8 N -0.918 5.918 9 Si 0.956 3.044 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.680 5.680 14 C 0.068 3.932 15 C -0.078 4.078 16 H 0.077 0.923 17 C -0.146 4.146 18 C -0.097 4.097 19 C -0.074 4.074 20 C -0.090 4.090 21 C -0.134 4.134 22 C -0.128 4.128 23 C -0.137 4.137 24 C -0.128 4.128 25 C -0.133 4.133 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.036 0.964 29 H 0.017 0.983 30 H 0.056 0.944 31 H 0.261 0.739 32 H 0.332 0.668 33 H 0.051 0.949 34 H 0.003 0.997 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.128 0.872 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 4.789 21.951 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.138 4.138 3 C 0.112 3.888 4 H -0.025 1.025 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.184 4.184 8 N -0.558 5.558 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.311 5.311 14 C -0.062 4.062 15 C -0.097 4.097 16 H 0.095 0.905 17 C -0.203 4.203 18 C -0.135 4.135 19 C -0.112 4.112 20 C -0.090 4.090 21 C -0.152 4.152 22 C -0.146 4.146 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.151 4.151 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.150 0.850 33 H 0.069 0.931 34 H 0.021 0.979 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.146 0.854 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.155 0.845 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.777 4.173 21.973 22.379 hybrid contribution 0.858 0.581 -1.421 1.759 sum 1.635 4.754 20.551 21.157 Atomic orbital electron populations 1.21296 0.95796 0.98329 1.00914 1.21314 0.96435 0.97777 0.98273 1.18913 0.90378 0.92258 0.87203 1.02456 1.21430 1.31422 1.12024 0.91356 0.92400 1.25660 0.95227 0.95673 1.01834 1.70023 1.37651 1.24005 1.24092 0.85650 0.78864 0.78647 0.78704 1.19704 1.21217 1.19548 1.60664 1.50109 1.15193 1.05153 1.21981 0.93131 0.99273 0.91828 1.21068 1.00235 0.95394 0.92981 0.90497 1.21863 1.01268 0.95231 1.01932 1.21462 0.98881 1.00125 0.93008 1.20624 0.98378 1.01453 0.90696 1.20129 0.96591 0.95580 0.96726 1.21320 1.00722 0.97296 0.95817 1.21444 0.95661 1.00233 0.97283 1.21451 0.97896 0.95514 1.00629 1.21444 1.00052 0.97840 0.95294 1.21305 0.95580 1.00347 0.97844 0.92858 0.94901 0.94500 0.96465 0.92512 0.93033 0.84973 0.93053 0.97886 0.93278 0.90549 0.93468 0.92535 0.92545 0.89980 0.90466 0.85441 0.84505 0.84323 0.84476 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.76 9.52 71.98 0.69 -4.08 16 2 C -0.10 -4.97 5.58 30.60 0.17 -4.80 16 3 C 0.22 11.36 2.30 44.17 0.10 11.46 16 4 H -0.04 -2.45 7.75 -2.39 -0.02 -2.47 16 5 C -0.52 -28.56 7.27 25.60 0.19 -28.38 16 6 H 0.06 3.09 7.62 -2.91 -0.02 3.06 16 7 C 0.02 0.83 5.30 84.65 0.45 1.28 16 8 N -0.92 -53.40 11.32 21.44 0.24 -53.15 16 9 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 N -0.68 -28.67 5.63 -495.46 -2.79 -31.46 16 14 C 0.07 2.44 4.97 86.30 0.43 2.87 16 15 C -0.08 -2.10 2.59 -10.80 -0.03 -2.13 16 16 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 17 C -0.15 -3.58 8.72 71.98 0.63 -2.95 16 18 C -0.10 -2.23 4.66 30.59 0.14 -2.09 16 19 C -0.07 -1.41 5.10 29.85 0.15 -1.26 16 20 C -0.09 -1.80 5.13 -19.86 -0.10 -1.90 16 21 C -0.13 -2.56 9.70 22.27 0.22 -2.34 16 22 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 23 C -0.14 -2.21 10.05 22.27 0.22 -1.99 16 24 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 25 C -0.13 -2.50 9.70 22.27 0.22 -2.29 16 26 H 0.05 2.24 7.74 -2.39 -0.02 2.22 16 27 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.04 1.78 7.08 -2.39 -0.02 1.76 16 29 H 0.02 0.79 7.51 -2.39 -0.02 0.78 16 30 H 0.06 3.18 6.06 -2.39 -0.01 3.16 16 31 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.33 13.65 6.38 -89.70 -0.57 13.08 16 33 H 0.05 1.93 7.51 -2.39 -0.02 1.91 16 34 H 0.00 0.11 7.98 -2.38 -0.02 0.09 16 35 H 0.05 1.32 6.61 -2.39 -0.02 1.31 16 36 H 0.08 1.50 6.57 -2.39 -0.02 1.48 16 37 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.42 6.51 -2.39 -0.02 1.41 16 41 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 42 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 43 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 44 H 0.14 1.57 8.06 -2.92 -0.02 1.54 16 45 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 46 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -60.84 361.23 3.75 -57.09 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.35 Total: 24.40 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: 3.92 Total: -42.49 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -2.55 Total: -84.62 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -60.84 3.75 -57.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358283323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.628 kcal (2) G-P(sol) polarization free energy of solvation -60.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds