Wall clock time and date at job start Mon Mar 30 2020 01:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47371 * 2 1 4 4 N 1.46900 * 109.46955 * 119.99950 * 2 1 3 5 5 C 1.46904 * 111.00239 * 330.03729 * 4 2 1 6 6 C 1.46902 * 111.00024 * 206.08693 * 4 2 1 7 7 C 1.50703 * 109.47191 * 201.10085 * 6 4 2 8 8 C 1.38633 * 119.75013 * 89.99948 * 7 6 4 9 9 C 1.37611 * 120.24856 * 180.23375 * 8 7 6 10 10 C 1.40721 * 119.74619 * 359.51667 * 9 8 7 11 11 C 1.41384 * 120.24773 * 180.23487 * 10 9 8 12 12 H 1.08001 * 120.00046 * 210.19214 * 11 10 9 13 13 C 1.39950 * 120.00151 * 30.18716 * 11 10 9 14 14 N 1.30819 * 119.99879 * 15.03314 * 13 11 10 15 15 Si 1.86799 * 120.00145 * 195.03153 * 13 11 10 16 16 H 1.48501 * 109.47138 * 59.99935 * 15 13 11 17 17 H 1.48497 * 109.47131 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46961 * 300.00141 * 15 13 11 19 19 C 1.40720 * 119.50684 * 0.48030 * 10 9 8 20 20 C 1.37618 * 119.74780 * 359.75082 * 19 10 9 21 21 C 1.53002 * 109.47019 * 239.99758 * 2 1 3 22 22 C 1.53005 * 109.47006 * 294.06876 * 21 2 1 23 23 C 1.53002 * 109.46885 * 54.06560 * 21 2 1 24 24 C 1.52998 * 109.47219 * 174.06952 * 21 2 1 25 25 H 1.09010 * 109.46842 * 300.00444 * 1 2 3 26 26 H 1.09006 * 109.47087 * 59.99603 * 1 2 3 27 27 H 1.08996 * 109.47392 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47051 * 302.58413 * 5 4 2 29 29 H 1.09003 * 109.46347 * 62.57956 * 5 4 2 30 30 H 1.08994 * 109.47363 * 182.57755 * 5 4 2 31 31 H 1.08997 * 109.47300 * 81.09665 * 6 4 2 32 32 H 1.09007 * 109.46641 * 321.09912 * 6 4 2 33 33 H 1.08001 * 119.87399 * 359.95585 * 8 7 6 34 34 H 1.08001 * 120.12764 * 179.72011 * 9 8 7 35 35 H 0.96999 * 120.00190 * 180.02562 * 14 13 11 36 36 H 1.08001 * 120.12858 * 179.73454 * 19 10 9 37 37 H 1.07997 * 119.87594 * 180.02562 * 20 19 10 38 38 H 1.09000 * 109.47414 * 66.26829 * 22 21 2 39 39 H 1.08996 * 109.46844 * 186.27255 * 22 21 2 40 40 H 1.09001 * 109.46968 * 306.26871 * 22 21 2 41 41 H 1.08999 * 109.46742 * 60.00412 * 23 21 2 42 42 H 1.08998 * 109.46531 * 179.97438 * 23 21 2 43 43 H 1.09002 * 109.47319 * 300.00251 * 23 21 2 44 44 H 1.08997 * 109.47229 * 69.24989 * 24 21 2 45 45 H 1.08997 * 109.47219 * 189.25615 * 24 21 2 46 46 H 1.09000 * 109.46963 * 309.25183 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.0749 -0.5455 2.3148 6 6 3.3564 -0.2131 1.5753 7 6 4.0358 -1.2449 2.4383 8 6 4.8082 -2.2340 1.8491 9 6 5.4292 -3.1841 2.6270 10 6 5.2863 -3.1431 4.0264 11 6 5.9237 -4.1110 4.8361 12 1 5.4798 -4.4065 5.7753 13 6 7.1300 -4.6864 4.4206 14 7 7.8174 -4.1371 3.4526 15 14 7.7584 -6.2386 5.2483 16 1 6.7637 -7.3280 5.0776 17 1 9.0466 -6.6425 4.6299 18 1 7.9646 -5.9789 6.6958 19 6 4.4999 -2.1346 4.6134 20 6 3.8841 -1.1975 3.8156 21 6 2.0400 -0.7213 -1.2492 22 6 1.6553 -2.2004 -1.1768 23 6 1.4118 -0.0913 -2.4940 24 6 3.5627 -0.5936 -1.3260 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.9148 0.5133 2.5182 29 1 0.1259 -1.0124 2.0509 30 1 1.4830 -1.0284 3.2026 31 1 3.2649 0.7209 2.1295 32 1 3.9484 -0.0452 0.6755 33 1 4.9192 -2.2615 0.7752 34 1 6.0268 -3.9564 2.1656 35 1 8.6532 -4.5360 3.1643 36 1 4.3798 -2.0962 5.6861 37 1 3.2804 -0.4224 4.2640 38 1 0.5711 -2.2972 -1.2343 39 1 2.1125 -2.7359 -2.0089 40 1 2.0083 -2.6220 -0.2356 41 1 1.6859 0.9624 -2.5455 42 1 1.7755 -0.6049 -3.3839 43 1 0.3270 -0.1824 -2.4393 44 1 4.0173 -1.1816 -0.5288 45 1 3.9099 -0.9608 -2.2918 46 1 3.8457 0.4529 -1.2122 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399022400.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:22 Heat of formation + Delta-G solvation = 12.818596 kcal Electronic energy + Delta-G solvation = -22116.370773 eV Core-core repulsion = 19198.285955 eV Total energy + Delta-G solvation = -2918.084818 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.39807 -37.40502 -34.98951 -33.52728 -31.21823 -29.34071 -29.10923 -27.36988 -27.05467 -26.53270 -25.43340 -23.24433 -21.21210 -20.86665 -19.65066 -18.19382 -17.21958 -15.77849 -15.52289 -15.16646 -14.86477 -14.20945 -13.94675 -13.63768 -13.49424 -13.21890 -12.93985 -12.62731 -12.39650 -12.15810 -12.11068 -11.87912 -11.69211 -11.59740 -11.49323 -11.34500 -11.17642 -10.97702 -10.90698 -10.74331 -10.61418 -10.41392 -10.32642 -10.20286 -9.94515 -9.48606 -9.21643 -9.10509 -7.78123 -7.37793 -7.18027 -6.67615 -4.29382 2.81581 3.10091 3.12029 3.13358 3.22436 3.99301 4.32809 4.75160 4.89110 4.92886 5.19875 5.40137 5.45297 5.50800 5.61852 5.69879 5.73011 5.74710 5.84376 5.87670 5.90429 5.96736 5.98409 6.08230 6.10008 6.14083 6.22959 6.27613 6.35699 6.39054 6.42284 6.48952 6.52786 6.65972 6.83379 7.02160 7.15453 7.31993 7.40331 7.54738 7.58154 7.68743 7.93513 8.11714 8.19124 8.36999 8.70518 8.96445 9.03870 10.29304 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.004206 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.206437 B = 6655.144484 C = 7145.220069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.088 3.912 3 H 0.037 0.963 4 N -0.523 5.523 5 C 0.025 3.975 6 C 0.101 3.899 7 C -0.192 4.192 8 C -0.083 4.083 9 C -0.159 4.159 10 C 0.114 3.886 11 C -0.471 4.471 12 H 0.075 0.925 13 C 0.078 3.922 14 N -0.801 5.801 15 Si 0.906 3.094 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.267 1.267 19 C -0.222 4.222 20 C -0.088 4.088 21 C -0.054 4.054 22 C -0.133 4.133 23 C -0.143 4.143 24 C -0.152 4.152 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.014 0.986 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.021 0.979 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.279 0.721 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.041 0.959 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.821 6.085 -8.313 14.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.021 4.021 3 H 0.055 0.945 4 N -0.247 5.247 5 C -0.123 4.123 6 C -0.025 4.025 7 C -0.194 4.194 8 C -0.102 4.102 9 C -0.178 4.178 10 C 0.112 3.888 11 C -0.501 4.501 12 H 0.093 0.907 13 C -0.139 4.139 14 N -0.427 5.427 15 Si 0.731 3.269 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.192 1.192 19 C -0.242 4.242 20 C -0.107 4.107 21 C -0.055 4.055 22 C -0.190 4.190 23 C -0.201 4.201 24 C -0.208 4.208 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.032 0.968 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.039 0.961 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.067 0.933 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.560 5.577 -8.554 13.989 hybrid contribution 0.372 0.238 0.603 0.747 sum -9.188 5.816 -7.951 13.471 Atomic orbital electron populations 1.22186 0.95464 1.02450 1.01324 1.21656 0.94255 0.94894 0.91248 0.94485 1.62104 1.02418 1.56630 1.03551 1.22459 0.96484 0.98258 0.95142 1.21168 0.88653 0.94233 0.98409 1.18871 1.06401 1.01425 0.92685 1.20473 0.97421 0.95220 0.97101 1.21206 1.02776 1.00110 0.93718 1.17582 0.89065 0.90047 0.92093 1.19502 1.05132 1.19789 1.05705 0.90717 1.25834 0.96326 0.97347 0.94413 1.69800 1.12380 1.36238 1.24314 0.86414 0.78266 0.82125 0.80131 1.18924 1.20437 1.19157 1.20988 1.07451 0.98450 0.97288 1.20364 0.99156 0.97940 0.93228 1.20449 0.95353 0.96382 0.93279 1.21779 1.00022 0.94485 1.02740 1.21977 1.00549 1.00158 0.97384 1.22180 0.95260 1.01268 1.02132 0.92704 0.92416 0.91605 0.96801 0.91915 0.90775 0.96110 0.90187 0.89511 0.87173 0.91013 0.89270 0.90006 0.93703 0.94010 0.90178 0.93256 0.92885 0.92567 0.90252 0.93337 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 7.21 37.16 0.27 -1.47 16 2 C 0.09 1.15 1.84 -67.71 -0.12 1.02 16 3 H 0.04 0.50 7.81 -51.93 -0.41 0.09 16 4 N -0.52 -8.12 3.36 -236.32 -0.79 -8.92 16 5 C 0.02 0.36 8.10 60.07 0.49 0.85 16 6 C 0.10 1.77 4.29 -4.97 -0.02 1.75 16 7 C -0.19 -4.09 5.20 -104.33 -0.54 -4.63 16 8 C -0.08 -1.92 9.61 -39.66 -0.38 -2.30 16 9 C -0.16 -4.12 8.65 -38.87 -0.34 -4.46 16 10 C 0.11 3.07 5.51 -106.83 -0.59 2.48 16 11 C -0.47 -12.70 9.04 -37.74 -0.34 -13.04 16 12 H 0.07 1.94 7.89 -52.49 -0.41 1.53 16 13 C 0.08 1.98 5.16 -17.34 -0.09 1.89 16 14 N -0.80 -21.10 11.19 55.55 0.62 -20.48 16 15 Si 0.91 19.03 29.59 -169.99 -5.03 14.01 16 16 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 17 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 19 C -0.22 -5.49 9.80 -38.87 -0.38 -5.87 16 20 C -0.09 -1.95 8.30 -39.66 -0.33 -2.28 16 21 C -0.05 -0.67 0.63 -154.50 -0.10 -0.77 16 22 C -0.13 -1.76 7.97 37.16 0.30 -1.46 16 23 C -0.14 -1.48 7.94 37.16 0.30 -1.18 16 24 C -0.15 -2.02 6.91 37.16 0.26 -1.76 16 25 H 0.05 0.59 6.42 -51.92 -0.33 0.26 16 26 H 0.06 0.56 6.34 -51.93 -0.33 0.23 16 27 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 28 H 0.01 0.19 7.75 -51.93 -0.40 -0.22 16 29 H 0.06 0.83 6.49 -51.93 -0.34 0.49 16 30 H 0.07 1.23 6.06 -51.93 -0.31 0.92 16 31 H 0.02 0.36 7.92 -51.93 -0.41 -0.05 16 32 H 0.08 1.34 4.18 -51.93 -0.22 1.12 16 33 H 0.09 1.83 6.31 -52.49 -0.33 1.50 16 34 H 0.11 2.98 6.50 -52.49 -0.34 2.63 16 35 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 36 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.08 1.62 7.70 -52.49 -0.40 1.22 16 38 H 0.04 0.54 6.90 -51.93 -0.36 0.18 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 1.28 7.24 -51.93 -0.38 0.90 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.54 6.33 -51.93 -0.33 0.21 16 44 H 0.08 1.24 4.41 -51.93 -0.23 1.01 16 45 H 0.05 0.59 8.12 -51.93 -0.42 0.17 16 46 H 0.05 0.60 7.64 -51.93 -0.40 0.20 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -26.67 340.81 -9.21 -35.88 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.51 Total: 5.60 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: -1.63 Total: -31.23 kcal Atomic # 7 Polarization: -29.22 SS G_CDS: -0.17 Total: -29.39 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -26.67 -9.21 -35.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399022400.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.699 kcal (2) G-P(sol) polarization free energy of solvation -26.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds