Wall clock time and date at job start Mon Mar 30 2020 01:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47371 * 2 1 4 4 N 1.46900 * 109.46955 * 119.99950 * 2 1 3 5 5 C 1.46904 * 111.00239 * 330.03729 * 4 2 1 6 6 C 1.46902 * 111.00024 * 206.08693 * 4 2 1 7 7 C 1.50703 * 109.47191 * 201.10085 * 6 4 2 8 8 C 1.38633 * 119.75013 * 89.99948 * 7 6 4 9 9 C 1.37611 * 120.24856 * 180.23375 * 8 7 6 10 10 C 1.40721 * 119.74619 * 359.51667 * 9 8 7 11 11 C 1.41384 * 120.24773 * 180.23487 * 10 9 8 12 12 H 1.08001 * 120.00046 * 210.19214 * 11 10 9 13 13 C 1.39950 * 120.00151 * 30.18716 * 11 10 9 14 14 N 1.30819 * 119.99879 * 15.03314 * 13 11 10 15 15 Si 1.86799 * 120.00145 * 195.03153 * 13 11 10 16 16 H 1.48501 * 109.47138 * 59.99935 * 15 13 11 17 17 H 1.48497 * 109.47131 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46961 * 300.00141 * 15 13 11 19 19 C 1.40720 * 119.50684 * 0.48030 * 10 9 8 20 20 C 1.37618 * 119.74780 * 359.75082 * 19 10 9 21 21 C 1.53002 * 109.47019 * 239.99758 * 2 1 3 22 22 C 1.53005 * 109.47006 * 294.06876 * 21 2 1 23 23 C 1.53002 * 109.46885 * 54.06560 * 21 2 1 24 24 C 1.52998 * 109.47219 * 174.06952 * 21 2 1 25 25 H 1.09010 * 109.46842 * 300.00444 * 1 2 3 26 26 H 1.09006 * 109.47087 * 59.99603 * 1 2 3 27 27 H 1.08996 * 109.47392 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47051 * 302.58413 * 5 4 2 29 29 H 1.09003 * 109.46347 * 62.57956 * 5 4 2 30 30 H 1.08994 * 109.47363 * 182.57755 * 5 4 2 31 31 H 1.08997 * 109.47300 * 81.09665 * 6 4 2 32 32 H 1.09007 * 109.46641 * 321.09912 * 6 4 2 33 33 H 1.08001 * 119.87399 * 359.95585 * 8 7 6 34 34 H 1.08001 * 120.12764 * 179.72011 * 9 8 7 35 35 H 0.96999 * 120.00190 * 180.02562 * 14 13 11 36 36 H 1.08001 * 120.12858 * 179.73454 * 19 10 9 37 37 H 1.07997 * 119.87594 * 180.02562 * 20 19 10 38 38 H 1.09000 * 109.47414 * 66.26829 * 22 21 2 39 39 H 1.08996 * 109.46844 * 186.27255 * 22 21 2 40 40 H 1.09001 * 109.46968 * 306.26871 * 22 21 2 41 41 H 1.08999 * 109.46742 * 60.00412 * 23 21 2 42 42 H 1.08998 * 109.46531 * 179.97438 * 23 21 2 43 43 H 1.09002 * 109.47319 * 300.00251 * 23 21 2 44 44 H 1.08997 * 109.47229 * 69.24989 * 24 21 2 45 45 H 1.08997 * 109.47219 * 189.25615 * 24 21 2 46 46 H 1.09000 * 109.46963 * 309.25183 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.0749 -0.5455 2.3148 6 6 3.3564 -0.2131 1.5753 7 6 4.0358 -1.2449 2.4383 8 6 4.8082 -2.2340 1.8491 9 6 5.4292 -3.1841 2.6270 10 6 5.2863 -3.1431 4.0264 11 6 5.9237 -4.1110 4.8361 12 1 5.4798 -4.4065 5.7753 13 6 7.1300 -4.6864 4.4206 14 7 7.8174 -4.1371 3.4526 15 14 7.7584 -6.2386 5.2483 16 1 6.7637 -7.3280 5.0776 17 1 9.0466 -6.6425 4.6299 18 1 7.9646 -5.9789 6.6958 19 6 4.4999 -2.1346 4.6134 20 6 3.8841 -1.1975 3.8156 21 6 2.0400 -0.7213 -1.2492 22 6 1.6553 -2.2004 -1.1768 23 6 1.4118 -0.0913 -2.4940 24 6 3.5627 -0.5936 -1.3260 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.9148 0.5133 2.5182 29 1 0.1259 -1.0124 2.0509 30 1 1.4830 -1.0284 3.2026 31 1 3.2649 0.7209 2.1295 32 1 3.9484 -0.0452 0.6755 33 1 4.9192 -2.2615 0.7752 34 1 6.0268 -3.9564 2.1656 35 1 8.6532 -4.5360 3.1643 36 1 4.3798 -2.0962 5.6861 37 1 3.2804 -0.4224 4.2640 38 1 0.5711 -2.2972 -1.2343 39 1 2.1125 -2.7359 -2.0089 40 1 2.0083 -2.6220 -0.2356 41 1 1.6859 0.9624 -2.5455 42 1 1.7755 -0.6049 -3.3839 43 1 0.3270 -0.1824 -2.4393 44 1 4.0173 -1.1816 -0.5288 45 1 3.9099 -0.9608 -2.2918 46 1 3.8457 0.4529 -1.2122 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399022400.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:21 Heat of formation + Delta-G solvation = 0.830870 kcal Electronic energy + Delta-G solvation = -22116.890600 eV Core-core repulsion = 19198.285955 eV Total energy + Delta-G solvation = -2918.604645 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.59407 -39.13771 -36.31347 -35.26073 -32.72136 -31.16437 -30.61357 -28.55033 -28.01333 -27.88434 -26.79003 -24.75736 -22.85521 -22.39041 -21.33168 -19.24521 -19.14473 -17.23991 -16.77123 -16.56859 -16.29622 -15.70763 -15.52582 -15.12174 -14.70458 -14.51521 -14.28668 -13.94059 -13.85331 -13.69176 -13.35493 -13.18910 -13.05222 -12.88521 -12.72804 -12.68270 -12.62846 -12.42002 -12.31729 -12.06483 -12.02649 -11.77414 -11.50221 -11.43643 -11.23882 -11.19199 -10.99576 -10.83144 -9.29165 -9.14987 -8.92846 -8.58218 -6.30640 1.00665 1.18124 1.37851 1.48980 1.53010 2.23067 2.73670 3.23672 3.80473 3.92277 3.95088 4.18861 4.25119 4.33588 4.47344 4.49893 4.57409 4.61451 4.63073 4.66497 4.75022 4.81092 4.88104 4.94042 4.95791 5.03364 5.06337 5.10178 5.15031 5.19164 5.20688 5.23091 5.32900 5.36218 5.38981 5.50038 5.51163 5.63300 5.74899 5.76897 6.00008 6.13918 6.23206 6.37249 6.44644 6.47028 6.75262 6.99038 7.08385 8.40753 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.004206 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.206437 B = 6655.144484 C = 7145.220069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.087 3.913 3 H 0.040 0.960 4 N -0.534 5.534 5 C 0.026 3.974 6 C 0.108 3.892 7 C -0.177 4.177 8 C -0.086 4.086 9 C -0.181 4.181 10 C 0.081 3.919 11 C -0.512 4.512 12 H 0.071 0.929 13 C 0.036 3.964 14 N -0.835 5.835 15 Si 0.979 3.021 16 H -0.262 1.262 17 H -0.268 1.268 18 H -0.261 1.261 19 C -0.238 4.238 20 C -0.087 4.087 21 C -0.053 4.053 22 C -0.128 4.128 23 C -0.138 4.138 24 C -0.151 4.151 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.028 0.972 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.285 0.715 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.056 0.944 39 H 0.043 0.957 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.307 7.211 -9.458 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 H 0.058 0.942 4 N -0.258 5.258 5 C -0.122 4.122 6 C -0.018 4.018 7 C -0.178 4.178 8 C -0.104 4.104 9 C -0.201 4.201 10 C 0.079 3.921 11 C -0.542 4.542 12 H 0.089 0.911 13 C -0.177 4.177 14 N -0.462 5.462 15 Si 0.800 3.200 16 H -0.186 1.186 17 H -0.192 1.192 18 H -0.185 1.185 19 C -0.258 4.258 20 C -0.106 4.106 21 C -0.054 4.054 22 C -0.186 4.186 23 C -0.195 4.195 24 C -0.208 4.208 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.064 6.718 -9.705 16.178 hybrid contribution 0.727 0.013 0.869 1.134 sum -10.336 6.731 -8.835 15.172 Atomic orbital electron populations 1.22150 0.93652 1.02570 1.02570 1.21748 0.95691 0.94642 0.89982 0.94213 1.61976 1.01682 1.57462 1.04708 1.22452 0.96688 0.99054 0.93980 1.21062 0.89830 0.92897 0.98058 1.19312 1.04564 1.00911 0.93026 1.20683 0.97038 0.94919 0.97800 1.21152 1.04014 1.01013 0.93922 1.17903 0.90328 0.91177 0.92685 1.19748 1.06509 1.21658 1.06274 0.91096 1.26666 0.95935 1.00162 0.94969 1.69863 1.12944 1.37697 1.25698 0.85307 0.77897 0.77622 0.79168 1.18619 1.19210 1.18483 1.21186 1.07820 0.98872 0.97898 1.20656 0.98615 0.97760 0.93545 1.20468 0.94779 0.95876 0.94271 1.21710 1.00688 0.95089 1.01082 1.21921 1.01081 1.00412 0.96110 1.22150 0.95996 1.01121 1.01522 0.92258 0.90457 0.91999 0.95366 0.90401 0.93076 0.95367 0.89366 0.87967 0.89221 0.90426 0.88963 0.87261 0.92527 0.93765 0.93317 0.92458 0.92428 0.91400 0.92936 0.92549 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 7.21 71.98 0.52 -2.32 16 2 C 0.09 2.03 1.84 44.92 0.08 2.11 16 3 H 0.04 0.93 7.81 -2.39 -0.02 0.91 16 4 N -0.53 -15.57 3.36 -901.60 -3.03 -18.60 16 5 C 0.03 0.71 8.10 127.69 1.03 1.75 16 6 C 0.11 3.59 4.29 85.56 0.37 3.96 16 7 C -0.18 -7.45 5.20 -19.67 -0.10 -7.55 16 8 C -0.09 -4.02 9.61 22.22 0.21 -3.81 16 9 C -0.18 -9.85 8.65 22.73 0.20 -9.66 16 10 C 0.08 4.55 5.51 -21.29 -0.12 4.43 16 11 C -0.51 -28.82 9.04 23.46 0.21 -28.61 16 12 H 0.07 3.87 7.89 -2.91 -0.02 3.85 16 13 C 0.04 1.90 5.16 85.26 0.44 2.34 16 14 N -0.84 -45.57 11.19 21.83 0.24 -45.32 16 15 Si 0.98 39.86 29.59 68.60 2.03 41.89 16 16 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 17 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 18 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 19 C -0.24 -12.07 9.80 22.73 0.22 -11.85 16 20 C -0.09 -3.84 8.30 22.22 0.18 -3.66 16 21 C -0.05 -1.19 0.63 -52.18 -0.03 -1.23 16 22 C -0.13 -3.19 7.97 71.98 0.57 -2.62 16 23 C -0.14 -2.36 7.94 71.98 0.57 -1.79 16 24 C -0.15 -3.76 6.91 71.98 0.50 -3.26 16 25 H 0.06 1.06 6.42 -2.38 -0.02 1.05 16 26 H 0.08 1.16 6.34 -2.38 -0.02 1.14 16 27 H 0.06 1.22 6.44 -2.39 -0.02 1.20 16 28 H 0.03 0.68 7.75 -2.39 -0.02 0.67 16 29 H 0.08 1.87 6.49 -2.39 -0.02 1.86 16 30 H 0.05 1.62 6.06 -2.39 -0.01 1.61 16 31 H 0.03 0.90 7.92 -2.39 -0.02 0.88 16 32 H 0.09 2.81 4.18 -2.38 -0.01 2.80 16 33 H 0.10 4.39 6.31 -2.91 -0.02 4.37 16 34 H 0.09 5.14 6.50 -2.91 -0.02 5.12 16 35 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 36 H 0.09 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.11 4.17 7.70 -2.91 -0.02 4.15 16 38 H 0.06 1.25 6.90 -2.39 -0.02 1.23 16 39 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 1.52 7.24 -2.39 -0.02 1.50 16 41 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 1.02 6.33 -2.39 -0.02 1.00 16 44 H 0.05 1.59 4.41 -2.39 -0.01 1.58 16 45 H 0.06 1.29 8.12 -2.39 -0.02 1.27 16 46 H 0.05 1.25 7.64 -2.39 -0.02 1.23 16 Total: -1.00 -59.58 340.81 5.05 -54.53 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.95 Total: 29.25 kcal Atomic # 6 Polarization: -66.61 SS G_CDS: 4.86 Total: -61.75 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -2.78 Total: -63.92 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -59.58 5.05 -54.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399022400.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.356 kcal (2) G-P(sol) polarization free energy of solvation -59.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds