Wall clock time and date at job start Mon Mar 30 2020 01:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46905 * 109.46815 * 2 1 4 4 C 1.46901 * 110.99413 * 195.32348 * 3 2 1 5 5 C 1.50703 * 109.46960 * 75.59119 * 4 3 2 6 6 C 1.38633 * 119.74908 * 270.24698 * 5 4 3 7 7 C 1.37611 * 120.25051 * 180.25997 * 6 5 4 8 8 C 1.40716 * 119.74518 * 359.46898 * 7 6 5 9 9 C 1.41392 * 120.24709 * 180.29920 * 8 7 6 10 10 H 1.08008 * 119.99869 * 29.36453 * 9 8 7 11 11 C 1.39950 * 120.00166 * 209.36387 * 9 8 7 12 12 N 1.30822 * 119.99708 * 11.42140 * 11 9 8 13 13 Si 1.86795 * 120.00188 * 191.41640 * 11 9 8 14 14 H 1.48500 * 109.46813 * 60.00185 * 13 11 9 15 15 H 1.48491 * 109.47289 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47353 * 300.00622 * 13 11 9 17 17 C 1.40712 * 119.51137 * 0.27472 * 8 7 6 18 18 C 1.37625 * 119.74436 * 0.02562 * 17 8 7 19 19 C 1.46895 * 111.00167 * 71.37149 * 3 2 1 20 20 C 1.52999 * 109.47462 * 211.65323 * 19 3 2 21 21 C 1.53001 * 109.46666 * 57.99066 * 20 19 3 22 22 C 1.52988 * 109.47556 * 177.99509 * 20 19 3 23 23 C 1.53000 * 109.46726 * 297.99732 * 20 19 3 24 24 H 1.09002 * 109.47108 * 182.86557 * 1 2 3 25 25 H 1.09005 * 109.47107 * 302.86008 * 1 2 3 26 26 H 1.08996 * 109.47536 * 62.85995 * 1 2 3 27 27 H 1.08995 * 109.47393 * 239.99879 * 2 1 3 28 28 H 1.09002 * 109.46926 * 119.99397 * 2 1 3 29 29 H 1.08997 * 109.47278 * 315.58809 * 4 3 2 30 30 H 1.09000 * 109.46822 * 195.58684 * 4 3 2 31 31 H 1.08004 * 119.87774 * 0.02562 * 6 5 4 32 32 H 1.08004 * 120.13173 * 179.74355 * 7 6 5 33 33 H 0.96997 * 120.00023 * 179.97438 * 12 11 9 34 34 H 1.07996 * 120.13521 * 180.02562 * 17 8 7 35 35 H 1.08001 * 119.87513 * 179.97438 * 18 17 8 36 36 H 1.09005 * 109.47247 * 331.65761 * 19 3 2 37 37 H 1.09006 * 109.47094 * 91.65411 * 19 3 2 38 38 H 1.08997 * 109.47206 * 64.59211 * 21 20 19 39 39 H 1.09003 * 109.46856 * 184.58741 * 21 20 19 40 40 H 1.08997 * 109.47768 * 304.58961 * 21 20 19 41 41 H 1.08998 * 109.47322 * 59.99662 * 22 20 19 42 42 H 1.09007 * 109.47423 * 180.02562 * 22 20 19 43 43 H 1.09004 * 109.47131 * 300.00258 * 22 20 19 44 44 H 1.08999 * 109.47564 * 70.17890 * 23 20 19 45 45 H 1.09007 * 109.46674 * 190.16877 * 23 20 19 46 46 H 1.08996 * 109.47305 * 310.16781 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4421 1.4404 -0.3624 5 6 3.5908 1.2286 -1.8471 6 6 3.7452 -0.0553 -2.3467 7 6 3.8872 -0.2601 -3.7001 8 6 3.8640 0.8388 -4.5787 9 6 4.0026 0.6400 -5.9717 10 1 3.6626 -0.2809 -6.4222 11 6 4.5804 1.6363 -6.7667 12 7 5.1918 2.6479 -6.2060 13 14 4.4786 1.5218 -8.6284 14 1 3.0537 1.5107 -9.0464 15 1 5.1636 2.6916 -9.2345 16 1 5.1380 0.2717 -9.0843 17 6 3.7014 2.1370 -4.0609 18 6 3.5674 2.3188 -2.7033 19 6 1.7821 2.0274 1.2995 20 6 1.5379 3.5235 1.0920 21 6 0.3452 3.7201 0.1540 22 6 1.2411 4.1837 2.4398 23 6 2.7832 4.1625 0.4742 24 1 -0.3633 -1.0264 0.0514 25 1 -0.3633 0.5576 0.8633 26 1 -0.3634 0.4688 -0.9145 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9839 0.6601 0.1720 30 1 3.8482 2.4151 -0.0920 31 1 3.7579 -0.8977 -1.6709 32 1 4.0115 -1.2608 -4.0869 33 1 5.5926 3.3383 -6.7570 34 1 3.6817 2.9876 -4.7261 35 1 3.4429 3.3143 -2.3035 36 1 0.9083 1.5788 1.7723 37 1 2.6536 1.8869 1.9390 38 1 -0.5579 3.3373 0.6294 39 1 0.2215 4.7820 -0.0588 40 1 0.5221 3.1812 -0.7768 41 1 2.0907 4.0435 3.1080 42 1 1.0666 5.2495 2.2918 43 1 0.3539 3.7283 2.8799 44 1 2.8915 3.8251 -0.5565 45 1 2.6817 5.2477 0.4924 46 1 3.6635 3.8704 1.0467 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399093716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:51 Heat of formation + Delta-G solvation = 3.630440 kcal Electronic energy + Delta-G solvation = -22030.230307 eV Core-core repulsion = 19111.747061 eV Total energy + Delta-G solvation = -2918.483246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.99639 -37.27194 -35.21124 -33.58040 -31.19215 -29.53228 -29.23879 -27.33876 -27.03511 -26.61342 -24.82265 -23.22241 -21.16802 -20.66678 -19.61720 -18.64319 -17.22709 -15.52000 -15.41001 -15.11345 -14.92173 -14.10719 -13.95280 -13.67573 -13.55395 -13.45764 -13.07694 -12.56547 -12.36651 -12.14170 -12.10257 -11.89592 -11.67476 -11.50222 -11.41983 -11.27621 -11.12202 -10.93578 -10.90531 -10.68565 -10.54659 -10.50027 -10.38838 -10.22963 -9.96129 -9.49481 -9.21371 -9.13101 -7.80815 -7.37649 -7.17420 -6.64910 -4.30449 2.81297 3.09821 3.12280 3.13195 3.22162 3.99016 4.32538 4.76209 4.95947 5.02225 5.18469 5.38849 5.50719 5.57750 5.67277 5.69044 5.73190 5.76808 5.83553 5.85099 5.92496 6.00167 6.02786 6.06602 6.09748 6.23512 6.25083 6.32393 6.38839 6.42220 6.43627 6.48212 6.53856 6.67251 6.79219 7.02843 7.15081 7.34399 7.41313 7.56633 7.58295 7.68830 7.93810 8.12253 8.19865 8.37307 8.71404 8.96876 9.04104 10.30017 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.004348 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.244854 B = 6438.227068 C = 6947.738599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 N -0.524 5.524 4 C 0.103 3.897 5 C -0.191 4.191 6 C -0.090 4.090 7 C -0.222 4.222 8 C 0.111 3.889 9 C -0.468 4.468 10 H 0.074 0.926 11 C 0.075 3.925 12 N -0.804 5.804 13 Si 0.908 3.092 14 H -0.265 1.265 15 H -0.279 1.279 16 H -0.267 1.267 17 C -0.158 4.158 18 C -0.085 4.085 19 C 0.061 3.939 20 C -0.059 4.059 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.148 4.148 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.279 0.721 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.031 0.969 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.046 0.954 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.126 1.372 12.084 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 N -0.248 5.248 4 C -0.023 4.023 5 C -0.193 4.193 6 C -0.109 4.109 7 C -0.241 4.241 8 C 0.109 3.891 9 C -0.498 4.498 10 H 0.092 0.908 11 C -0.141 4.141 12 N -0.430 5.430 13 Si 0.733 3.267 14 H -0.190 1.190 15 H -0.204 1.204 16 H -0.192 1.192 17 C -0.177 4.177 18 C -0.104 4.104 19 C -0.067 4.067 20 C -0.060 4.060 21 C -0.189 4.189 22 C -0.199 4.199 23 C -0.205 4.205 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.065 0.935 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.245 1.838 11.675 13.368 hybrid contribution 0.550 -0.499 -0.216 0.773 sum -5.696 1.339 11.459 12.866 Atomic orbital electron populations 1.21775 0.95644 1.00526 1.02139 1.22117 0.95453 0.89663 1.00711 1.62033 1.18603 1.16293 1.27837 1.21139 0.86533 1.00412 0.94215 1.18890 1.14378 0.93366 0.92677 1.20354 1.01083 0.94686 0.94783 1.20987 1.12583 0.97791 0.92756 1.17598 0.87428 0.91145 0.92914 1.19524 1.35845 1.02073 0.92375 0.90784 1.25846 0.92993 0.94275 1.01002 1.69787 1.25998 1.09493 1.37769 0.86373 0.79440 0.78516 0.82354 1.18962 1.20427 1.19169 1.21319 1.04810 0.98022 0.93544 1.20503 1.00134 0.95941 0.93780 1.22205 0.99637 0.94388 0.90520 1.20465 0.96381 0.94333 0.94829 1.21746 0.95962 1.00462 1.00693 1.21879 1.00855 1.00342 0.96776 1.22143 0.96360 0.99481 1.02517 0.93138 0.93313 0.91860 0.89751 0.96167 0.96191 0.90214 0.90019 0.89292 0.91052 0.86615 0.89486 0.91699 0.95096 0.93919 0.93948 0.90403 0.93182 0.92758 0.93109 0.90309 0.93534 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.99 37.16 0.37 -1.48 16 2 C 0.05 0.72 5.44 -3.82 -0.02 0.70 16 3 N -0.52 -8.08 3.22 -236.07 -0.76 -8.85 16 4 C 0.10 1.79 4.20 -4.97 -0.02 1.77 16 5 C -0.19 -4.06 5.19 -104.33 -0.54 -4.60 16 6 C -0.09 -1.99 8.22 -39.66 -0.33 -2.32 16 7 C -0.22 -5.45 9.80 -38.87 -0.38 -5.83 16 8 C 0.11 2.99 5.54 -106.83 -0.59 2.39 16 9 C -0.47 -12.58 9.06 -37.74 -0.34 -12.93 16 10 H 0.07 1.92 7.87 -52.48 -0.41 1.51 16 11 C 0.07 1.91 5.24 -17.34 -0.09 1.82 16 12 N -0.80 -21.11 10.92 55.55 0.61 -20.50 16 13 Si 0.91 19.04 29.57 -169.99 -5.03 14.01 16 14 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 15 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 17 C -0.16 -4.09 8.65 -38.87 -0.34 -4.43 16 18 C -0.08 -1.95 9.60 -39.66 -0.38 -2.33 16 19 C 0.06 0.79 3.99 -3.83 -0.02 0.78 16 20 C -0.06 -0.73 0.85 -154.51 -0.13 -0.86 16 21 C -0.13 -1.70 8.35 37.16 0.31 -1.39 16 22 C -0.14 -1.45 8.45 37.15 0.31 -1.14 16 23 C -0.15 -1.98 6.87 37.16 0.26 -1.72 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.58 6.52 -51.93 -0.34 0.24 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.42 5.54 -51.93 -0.29 1.14 16 28 H 0.02 0.28 8.06 -51.93 -0.42 -0.14 16 29 H 0.02 0.34 7.94 -51.93 -0.41 -0.07 16 30 H 0.08 1.33 4.27 -51.93 -0.22 1.11 16 31 H 0.08 1.61 7.46 -52.48 -0.39 1.22 16 32 H 0.09 2.08 8.06 -52.48 -0.42 1.66 16 33 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 34 H 0.12 3.13 6.30 -52.49 -0.33 2.80 16 35 H 0.09 1.84 6.25 -52.49 -0.33 1.51 16 36 H 0.06 0.80 6.15 -51.93 -0.32 0.48 16 37 H 0.03 0.40 7.82 -51.93 -0.41 0.00 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 1.21 7.40 -51.93 -0.38 0.82 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 1.24 4.63 -51.93 -0.24 0.99 16 45 H 0.05 0.57 8.11 -51.93 -0.42 0.15 16 46 H 0.05 0.62 7.34 -51.93 -0.38 0.23 16 LS Contribution 349.48 15.07 5.27 5.27 Total: -1.00 -26.44 349.48 -9.65 -36.09 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.81 Total: 5.54 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: -1.93 Total: -31.56 kcal Atomic # 7 Polarization: -29.19 SS G_CDS: -0.15 Total: -29.35 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.44 -9.65 -36.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399093716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.721 kcal (2) G-P(sol) polarization free energy of solvation -26.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds