Wall clock time and date at job start Mon Mar 30 2020 01:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46905 * 109.46815 * 2 1 4 4 C 1.46901 * 110.99413 * 195.32348 * 3 2 1 5 5 C 1.50703 * 109.46960 * 75.59119 * 4 3 2 6 6 C 1.38633 * 119.74908 * 270.24698 * 5 4 3 7 7 C 1.37611 * 120.25051 * 180.25997 * 6 5 4 8 8 C 1.40716 * 119.74518 * 359.46898 * 7 6 5 9 9 C 1.41392 * 120.24709 * 180.29920 * 8 7 6 10 10 H 1.08008 * 119.99869 * 29.36453 * 9 8 7 11 11 C 1.39950 * 120.00166 * 209.36387 * 9 8 7 12 12 N 1.30822 * 119.99708 * 11.42140 * 11 9 8 13 13 Si 1.86795 * 120.00188 * 191.41640 * 11 9 8 14 14 H 1.48500 * 109.46813 * 60.00185 * 13 11 9 15 15 H 1.48491 * 109.47289 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47353 * 300.00622 * 13 11 9 17 17 C 1.40712 * 119.51137 * 0.27472 * 8 7 6 18 18 C 1.37625 * 119.74436 * 0.02562 * 17 8 7 19 19 C 1.46895 * 111.00167 * 71.37149 * 3 2 1 20 20 C 1.52999 * 109.47462 * 211.65323 * 19 3 2 21 21 C 1.53001 * 109.46666 * 57.99066 * 20 19 3 22 22 C 1.52988 * 109.47556 * 177.99509 * 20 19 3 23 23 C 1.53000 * 109.46726 * 297.99732 * 20 19 3 24 24 H 1.09002 * 109.47108 * 182.86557 * 1 2 3 25 25 H 1.09005 * 109.47107 * 302.86008 * 1 2 3 26 26 H 1.08996 * 109.47536 * 62.85995 * 1 2 3 27 27 H 1.08995 * 109.47393 * 239.99879 * 2 1 3 28 28 H 1.09002 * 109.46926 * 119.99397 * 2 1 3 29 29 H 1.08997 * 109.47278 * 315.58809 * 4 3 2 30 30 H 1.09000 * 109.46822 * 195.58684 * 4 3 2 31 31 H 1.08004 * 119.87774 * 0.02562 * 6 5 4 32 32 H 1.08004 * 120.13173 * 179.74355 * 7 6 5 33 33 H 0.96997 * 120.00023 * 179.97438 * 12 11 9 34 34 H 1.07996 * 120.13521 * 180.02562 * 17 8 7 35 35 H 1.08001 * 119.87513 * 179.97438 * 18 17 8 36 36 H 1.09005 * 109.47247 * 331.65761 * 19 3 2 37 37 H 1.09006 * 109.47094 * 91.65411 * 19 3 2 38 38 H 1.08997 * 109.47206 * 64.59211 * 21 20 19 39 39 H 1.09003 * 109.46856 * 184.58741 * 21 20 19 40 40 H 1.08997 * 109.47768 * 304.58961 * 21 20 19 41 41 H 1.08998 * 109.47322 * 59.99662 * 22 20 19 42 42 H 1.09007 * 109.47423 * 180.02562 * 22 20 19 43 43 H 1.09004 * 109.47131 * 300.00258 * 22 20 19 44 44 H 1.08999 * 109.47564 * 70.17890 * 23 20 19 45 45 H 1.09007 * 109.46674 * 190.16877 * 23 20 19 46 46 H 1.08996 * 109.47305 * 310.16781 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4421 1.4404 -0.3624 5 6 3.5908 1.2286 -1.8471 6 6 3.7452 -0.0553 -2.3467 7 6 3.8872 -0.2601 -3.7001 8 6 3.8640 0.8388 -4.5787 9 6 4.0026 0.6400 -5.9717 10 1 3.6626 -0.2809 -6.4222 11 6 4.5804 1.6363 -6.7667 12 7 5.1918 2.6479 -6.2060 13 14 4.4786 1.5218 -8.6284 14 1 3.0537 1.5107 -9.0464 15 1 5.1636 2.6916 -9.2345 16 1 5.1380 0.2717 -9.0843 17 6 3.7014 2.1370 -4.0609 18 6 3.5674 2.3188 -2.7033 19 6 1.7821 2.0274 1.2995 20 6 1.5379 3.5235 1.0920 21 6 0.3452 3.7201 0.1540 22 6 1.2411 4.1837 2.4398 23 6 2.7832 4.1625 0.4742 24 1 -0.3633 -1.0264 0.0514 25 1 -0.3633 0.5576 0.8633 26 1 -0.3634 0.4688 -0.9145 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9839 0.6601 0.1720 30 1 3.8482 2.4151 -0.0920 31 1 3.7579 -0.8977 -1.6709 32 1 4.0115 -1.2608 -4.0869 33 1 5.5926 3.3383 -6.7570 34 1 3.6817 2.9876 -4.7261 35 1 3.4429 3.3143 -2.3035 36 1 0.9083 1.5788 1.7723 37 1 2.6536 1.8869 1.9390 38 1 -0.5579 3.3373 0.6294 39 1 0.2215 4.7820 -0.0588 40 1 0.5221 3.1812 -0.7768 41 1 2.0907 4.0435 3.1080 42 1 1.0666 5.2495 2.2918 43 1 0.3539 3.7283 2.8799 44 1 2.8915 3.8251 -0.5565 45 1 2.6817 5.2477 0.4924 46 1 3.6635 3.8704 1.0467 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399093716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:51 Heat of formation + Delta-G solvation = -7.640411 kcal Electronic energy + Delta-G solvation = -22030.719048 eV Core-core repulsion = 19111.747061 eV Total energy + Delta-G solvation = -2918.971987 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.30549 -38.92765 -36.43193 -35.37134 -32.73496 -31.13038 -30.96662 -28.65772 -27.96189 -27.89659 -26.21635 -24.71712 -22.88451 -22.21038 -21.23988 -19.65926 -19.16515 -17.20917 -16.74844 -16.36954 -16.19337 -15.70844 -15.39017 -15.18985 -14.92156 -14.60589 -14.30555 -14.13308 -13.81665 -13.53853 -13.43275 -13.32025 -12.99244 -12.79217 -12.71663 -12.60329 -12.51364 -12.40422 -12.34717 -12.08062 -11.96889 -11.71907 -11.53483 -11.48845 -11.31409 -11.20964 -11.01540 -10.86616 -9.28340 -9.14537 -8.94735 -8.55072 -6.31241 1.00936 1.19129 1.37969 1.49367 1.53029 2.23221 2.74930 3.22645 3.81565 3.97124 4.03806 4.13742 4.27187 4.30986 4.35717 4.50639 4.57129 4.64293 4.67231 4.72179 4.74988 4.81574 4.87330 4.92910 4.95819 5.04371 5.06877 5.07839 5.16856 5.20143 5.24628 5.26935 5.32924 5.41128 5.42734 5.46776 5.50749 5.62151 5.73497 5.77444 6.00571 6.15233 6.24837 6.38239 6.45122 6.46862 6.76583 6.99782 7.09211 8.41787 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.004348 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.244854 B = 6438.227068 C = 6947.738599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.046 3.954 3 N -0.533 5.533 4 C 0.110 3.890 5 C -0.176 4.176 6 C -0.089 4.089 7 C -0.237 4.237 8 C 0.078 3.922 9 C -0.508 4.508 10 H 0.070 0.930 11 C 0.033 3.967 12 N -0.837 5.837 13 Si 0.981 3.019 14 H -0.262 1.262 15 H -0.268 1.268 16 H -0.261 1.261 17 C -0.181 4.181 18 C -0.087 4.087 19 C 0.062 3.938 20 C -0.058 4.058 21 C -0.127 4.127 22 C -0.135 4.135 23 C -0.147 4.147 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.036 0.964 29 H 0.028 0.972 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.285 0.715 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.851 1.373 14.119 15.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.081 4.081 3 N -0.257 5.257 4 C -0.017 4.017 5 C -0.177 4.177 6 C -0.107 4.107 7 C -0.257 4.257 8 C 0.076 3.924 9 C -0.539 4.539 10 H 0.089 0.911 11 C -0.180 4.180 12 N -0.464 5.464 13 Si 0.802 3.198 14 H -0.186 1.186 15 H -0.192 1.192 16 H -0.185 1.185 17 C -0.201 4.201 18 C -0.106 4.106 19 C -0.065 4.065 20 C -0.059 4.059 21 C -0.184 4.184 22 C -0.193 4.193 23 C -0.204 4.204 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.978 1.834 13.733 15.513 hybrid contribution 0.736 -0.503 -0.666 1.113 sum -6.242 1.330 13.066 14.542 Atomic orbital electron populations 1.21709 0.94231 1.01623 1.01785 1.22139 0.96626 0.89150 1.00225 1.61921 1.16955 1.17026 1.29836 1.21036 0.88226 1.01196 0.91219 1.19325 1.11074 0.92390 0.94923 1.20647 0.99866 0.96063 0.94170 1.21183 1.13137 0.97499 0.93885 1.17920 0.88725 0.92083 0.93680 1.19772 1.37871 1.02997 0.93233 0.91148 1.26682 0.91965 0.93507 1.05807 1.69858 1.26671 1.10253 1.39640 0.85272 0.79529 0.78919 0.76062 1.18606 1.19214 1.18541 1.21261 1.06833 0.97302 0.94664 1.20715 0.99479 0.97479 0.92938 1.22270 1.00514 0.94539 0.89186 1.20477 0.95444 0.94100 0.95857 1.21679 0.96857 1.00293 0.99588 1.21816 1.01672 1.00473 0.95327 1.22103 0.97235 1.00116 1.00931 0.91559 0.91854 0.93755 0.92155 0.94612 0.95356 0.89377 0.87268 0.88987 0.90489 0.88678 0.87955 0.90263 0.94390 0.92764 0.93625 0.93375 0.92436 0.92283 0.92006 0.93036 0.92730 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.99 71.98 0.72 -2.49 16 2 C 0.05 1.27 5.44 86.30 0.47 1.74 16 3 N -0.53 -15.39 3.22 -900.78 -2.90 -18.30 16 4 C 0.11 3.61 4.20 85.56 0.36 3.97 16 5 C -0.18 -7.37 5.19 -19.67 -0.10 -7.47 16 6 C -0.09 -3.90 8.22 22.22 0.18 -3.71 16 7 C -0.24 -11.99 9.80 22.73 0.22 -11.77 16 8 C 0.08 4.36 5.54 -21.29 -0.12 4.24 16 9 C -0.51 -28.60 9.06 23.46 0.21 -28.38 16 10 H 0.07 3.83 7.87 -2.91 -0.02 3.81 16 11 C 0.03 1.75 5.24 85.26 0.45 2.20 16 12 N -0.84 -45.57 10.92 21.83 0.24 -45.34 16 13 Si 0.98 39.87 29.57 68.60 2.03 41.90 16 14 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 15 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 16 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 17 C -0.18 -9.83 8.65 22.73 0.20 -9.63 16 18 C -0.09 -4.10 9.60 22.22 0.21 -3.88 16 19 C 0.06 1.44 3.99 86.30 0.34 1.78 16 20 C -0.06 -1.29 0.85 -52.19 -0.04 -1.33 16 21 C -0.13 -3.07 8.35 71.98 0.60 -2.47 16 22 C -0.14 -2.31 8.45 71.98 0.61 -1.70 16 23 C -0.15 -3.65 6.87 71.98 0.49 -3.15 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.30 6.52 -2.38 -0.02 1.29 16 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.94 5.54 -2.39 -0.01 1.93 16 28 H 0.04 0.88 8.06 -2.39 -0.02 0.86 16 29 H 0.03 0.89 7.94 -2.39 -0.02 0.87 16 30 H 0.09 2.77 4.27 -2.39 -0.01 2.76 16 31 H 0.11 4.14 7.46 -2.91 -0.02 4.12 16 32 H 0.09 4.45 8.06 -2.91 -0.02 4.42 16 33 H 0.28 14.11 8.30 -92.71 -0.77 13.34 16 34 H 0.10 5.46 6.30 -2.91 -0.02 5.45 16 35 H 0.10 4.39 6.25 -2.91 -0.02 4.37 16 36 H 0.08 1.63 6.15 -2.38 -0.01 1.61 16 37 H 0.04 0.85 7.82 -2.38 -0.02 0.83 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 1.46 7.40 -2.39 -0.02 1.44 16 41 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.05 1.56 4.63 -2.39 -0.01 1.55 16 45 H 0.05 1.24 8.11 -2.38 -0.02 1.22 16 46 H 0.05 1.24 7.34 -2.39 -0.02 1.22 16 Total: -1.00 -59.15 349.48 5.10 -54.05 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.94 Total: 29.75 kcal Atomic # 6 Polarization: -66.87 SS G_CDS: 4.81 Total: -62.06 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -2.66 Total: -63.63 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -59.15 5.10 -54.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399093716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.406 kcal (2) G-P(sol) polarization free energy of solvation -59.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds