Wall clock time and date at job start Mon Mar 30 2020 01:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86806 * 119.99927 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00330 * 3 2 1 5 5 H 1.48505 * 109.46638 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46981 * 119.99803 * 3 2 1 7 7 C 1.39949 * 120.00570 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99913 * 197.85403 * 7 2 1 9 9 C 1.41394 * 119.99781 * 17.85267 * 7 2 1 10 10 C 1.40720 * 120.24474 * 24.38914 * 9 7 2 11 11 C 1.37615 * 119.74406 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.25073 * 0.02838 * 11 10 9 13 13 C 1.50698 * 119.74731 * 179.97438 * 12 11 10 14 14 S 1.81391 * 109.47521 * 89.99696 * 13 12 11 15 15 C 1.76198 * 103.00469 * 179.97438 * 14 13 12 16 16 C 1.34172 * 125.24970 * 179.97438 * 15 14 13 17 17 C 1.38549 * 114.71537 * 179.97438 * 16 15 14 18 18 C 1.33244 * 114.98667 * 359.97438 * 17 16 15 19 19 S 1.75853 * 109.75949 * 0.02562 * 18 17 16 20 20 C 1.38635 * 120.49864 * 0.24306 * 12 11 10 21 21 C 1.37612 * 120.24704 * 359.45688 * 20 12 11 22 22 H 0.96993 * 120.00562 * 359.97438 * 1 2 3 23 23 H 1.08005 * 120.12701 * 0.02562 * 10 9 7 24 24 H 1.08004 * 119.87237 * 180.02562 * 11 10 9 25 25 H 1.09000 * 109.47110 * 329.99430 * 13 12 11 26 26 H 1.09010 * 109.46705 * 210.00039 * 13 12 11 27 27 H 1.07999 * 122.63961 * 0.25490 * 16 15 14 28 28 H 1.07995 * 122.50593 * 180.02562 * 17 16 15 29 29 H 1.08004 * 125.11813 * 179.97438 * 18 17 16 30 30 H 1.07995 * 119.87287 * 179.70197 * 20 12 11 31 31 H 1.08004 * 120.12628 * 180.26813 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2770 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2862 9 6 1.3522 -2.4068 -0.3765 10 6 0.2209 -2.3617 -1.2122 11 6 -0.4097 -3.5310 -1.5712 12 6 0.0651 -4.7500 -1.1124 13 6 -0.6346 -6.0234 -1.5122 14 16 0.0948 -6.6581 -3.0469 15 6 -0.8349 -8.1235 -3.3514 16 6 -0.6581 -8.9503 -4.3932 17 6 -1.5117 -10.0412 -4.4184 18 6 -2.3759 -10.1031 -3.4061 19 16 -2.1372 -8.7285 -2.3357 20 6 1.1754 -4.8059 -0.2841 21 6 1.8255 -3.6499 0.0827 22 1 -0.4850 0.8399 0.0004 23 1 -0.1509 -1.4131 -1.5704 24 1 -1.2779 -3.4988 -2.2128 25 1 -1.6942 -5.8217 -1.6697 26 1 -0.5196 -6.7648 -0.7214 27 1 0.0937 -8.7812 -5.1499 28 1 -1.4786 -10.7862 -5.1996 29 1 -3.1127 -10.8801 -3.2647 30 1 1.5338 -5.7607 0.0713 31 1 2.6929 -3.6960 0.7246 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399115696.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:58 Heat of formation + Delta-G solvation = 39.002383 kcal Electronic energy + Delta-G solvation = -15247.640579 eV Core-core repulsion = 12710.978972 eV Total energy + Delta-G solvation = -2536.661607 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.034 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -37.75269 -37.47707 -34.12165 -31.37626 -29.53830 -29.41885 -27.68403 -24.40541 -23.77617 -21.13665 -20.41671 -19.26774 -18.26219 -17.43021 -15.84138 -15.43219 -15.04272 -14.46004 -14.16137 -13.92170 -13.40700 -13.24234 -12.75204 -12.51308 -12.39207 -12.23194 -12.06252 -11.69913 -11.17098 -11.09815 -10.92869 -10.79437 -10.52015 -9.96509 -9.77407 -9.62282 -9.49806 -9.22214 -8.50229 -7.60045 -7.43633 -7.09577 -6.91045 -4.48501 0.95782 1.45061 1.52646 2.03752 2.64673 2.73835 2.92863 2.97383 3.00164 3.03038 3.28128 3.82648 4.50753 5.04025 5.33512 5.41786 5.51280 5.57265 5.63386 6.01906 6.03736 6.21541 6.22052 6.27179 6.43523 6.83695 6.92966 7.12805 7.21250 7.47324 7.69461 7.91472 7.95052 8.14607 8.49243 8.73967 8.82094 10.02342 Molecular weight = 276.03amu Principal moments of inertia in cm(-1) A = 0.054282 B = 0.003312 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.698541 B = 8451.145958 C = 8495.578738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.453 4.453 8 H 0.081 0.919 9 C 0.119 3.881 10 C -0.168 4.168 11 C -0.076 4.076 12 C -0.219 4.219 13 C -0.029 4.029 14 S -0.074 6.074 15 C -0.179 4.179 16 C -0.143 4.143 17 C -0.115 4.115 18 C -0.230 4.230 19 S 0.099 5.901 20 C -0.064 4.064 21 C -0.228 4.228 22 H 0.284 0.716 23 H 0.120 0.880 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.161 0.839 30 H 0.090 0.910 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.619 -11.670 -4.818 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.482 4.482 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.187 4.187 11 C -0.096 4.096 12 C -0.224 4.224 13 C -0.176 4.176 14 S 0.173 5.827 15 C -0.408 4.408 16 C -0.181 4.181 17 C -0.147 4.147 18 C -0.369 4.369 19 S 0.358 5.642 20 C -0.084 4.084 21 C -0.248 4.248 22 H 0.095 0.905 23 H 0.138 0.862 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.179 0.821 30 H 0.109 0.891 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.624 -10.534 -4.097 11.869 hybrid contribution -0.151 -0.408 -0.559 0.708 sum -3.775 -10.942 -4.656 12.476 Atomic orbital electron populations 1.69803 1.07708 1.29755 1.33521 1.25983 0.94775 1.01596 0.92065 0.86315 0.80179 0.79847 0.80167 1.18623 1.20192 1.18849 1.19681 0.98273 0.91272 1.38962 0.90108 1.17689 0.90812 0.92072 0.87875 1.21298 0.99385 0.96745 1.01313 1.20532 0.98208 0.92412 0.98483 1.18276 1.02797 0.90834 1.10448 1.22363 1.01103 0.99516 0.94657 1.86042 1.44989 1.17653 1.34003 1.26590 1.05283 1.05853 1.03121 1.19906 1.03259 0.95364 0.99524 1.20092 0.96191 0.99027 0.99430 1.25460 1.06992 1.03756 1.00663 1.84402 1.31964 1.19813 1.28053 1.20382 0.94499 0.96742 0.96774 1.20950 1.03826 0.92726 1.07253 0.90487 0.86204 0.89172 0.90267 0.90340 0.84194 0.84339 0.82132 0.89144 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.45 10.95 55.55 0.61 -18.84 16 2 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 17.90 29.60 -169.99 -5.03 12.87 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.45 -11.55 9.05 -37.74 -0.34 -11.89 16 8 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 9 C 0.12 3.07 5.58 -106.82 -0.60 2.47 16 10 C -0.17 -4.22 8.70 -38.87 -0.34 -4.56 16 11 C -0.08 -1.73 9.67 -39.66 -0.38 -2.11 16 12 C -0.22 -4.65 5.16 -104.33 -0.54 -5.18 16 13 C -0.03 -0.52 5.14 36.00 0.19 -0.34 16 14 S -0.07 -1.27 22.07 -107.50 -2.37 -3.64 16 15 C -0.18 -2.71 6.69 29.30 0.20 -2.51 16 16 C -0.14 -1.91 10.13 -40.90 -0.41 -2.33 16 17 C -0.12 -1.31 10.17 -41.21 -0.42 -1.73 16 18 C -0.23 -2.57 11.21 28.99 0.32 -2.25 16 19 S 0.10 1.32 22.32 -107.50 -2.40 -1.08 16 20 C -0.06 -1.39 9.67 -39.66 -0.38 -1.77 16 21 C -0.23 -5.41 9.80 -38.88 -0.38 -5.79 16 22 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 23 H 0.12 3.10 6.16 -52.48 -0.32 2.78 16 24 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 25 H 0.08 1.35 8.08 -51.92 -0.42 0.93 16 26 H 0.08 1.31 8.08 -51.92 -0.42 0.89 16 27 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 299.22 15.07 4.51 4.51 Total: -1.00 -25.99 299.22 -11.11 -37.10 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -3.25 Total: 5.34 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: -3.18 Total: -36.26 kcal Atomic # 7 Polarization: -19.45 SS G_CDS: 0.61 Total: -18.84 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -4.77 Total: -4.72 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -25.99 -11.11 -37.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399115696.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.107 kcal (2) G-P(sol) polarization free energy of solvation -25.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds