Wall clock time and date at job start Mon Mar 30 2020 01:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.50701 * 109.46989 * 240.00072 * 2 1 3 5 5 C 1.38230 * 120.00158 * 59.72914 * 4 2 1 6 6 C 1.38231 * 119.99948 * 179.76803 * 5 4 2 7 7 C 1.38231 * 120.00117 * 0.50191 * 6 5 4 8 8 C 1.50705 * 120.00545 * 179.72704 * 7 6 5 9 9 N 1.46906 * 109.47000 * 270.02563 * 8 7 6 10 10 C 1.46899 * 110.99963 * 293.94957 * 9 8 7 11 11 C 1.46901 * 110.99969 * 169.99715 * 9 8 7 12 12 H 1.09001 * 109.47347 * 58.83091 * 11 9 8 13 13 C 1.53005 * 109.46853 * 298.83295 * 11 9 8 14 14 C 1.52994 * 109.47022 * 178.83823 * 11 9 8 15 15 C 1.50699 * 109.47121 * 183.24409 * 14 11 9 16 16 H 1.08003 * 119.99932 * 356.65949 * 15 14 11 17 17 C 1.37878 * 120.00273 * 176.67185 * 15 14 11 18 18 N 1.31513 * 120.00096 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00159 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46933 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47172 * 119.99596 * 19 17 15 22 22 H 1.48500 * 109.46960 * 239.99744 * 19 17 15 23 23 C 1.38237 * 120.00011 * 359.75176 * 7 6 5 24 24 C 1.38232 * 119.99849 * 359.97438 * 23 7 6 25 25 H 1.09000 * 109.47046 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46850 * 300.00013 * 1 2 3 27 27 H 1.08999 * 109.46853 * 59.99705 * 1 2 3 28 28 H 1.08999 * 109.47348 * 120.00108 * 2 1 3 29 29 H 1.09002 * 109.46722 * 299.99883 * 3 2 1 30 30 H 1.09000 * 109.46793 * 59.99897 * 3 2 1 31 31 H 1.09001 * 109.46863 * 179.97438 * 3 2 1 32 32 H 1.07998 * 120.00017 * 359.97438 * 5 4 2 33 33 H 1.08009 * 120.00221 * 180.22566 * 6 5 4 34 34 H 1.09002 * 109.46725 * 30.01977 * 8 7 6 35 35 H 1.08990 * 109.47381 * 150.02027 * 8 7 6 36 36 H 1.09001 * 109.47083 * 53.28454 * 10 9 8 37 37 H 1.08999 * 109.47139 * 173.28595 * 10 9 8 38 38 H 1.08998 * 109.46802 * 293.28895 * 10 9 8 39 39 H 1.09000 * 109.47059 * 60.00312 * 13 11 9 40 40 H 1.09003 * 109.46845 * 180.02562 * 13 11 9 41 41 H 1.08994 * 109.47292 * 300.00284 * 13 11 9 42 42 H 1.09005 * 109.46719 * 303.23696 * 14 11 9 43 43 H 1.09000 * 109.47713 * 63.23599 * 14 11 9 44 44 H 0.96995 * 120.00721 * 180.02562 * 18 17 15 45 45 H 1.08001 * 120.00310 * 179.97438 * 23 7 6 46 46 H 1.08001 * 120.00101 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6938 -0.2414 -2.4860 6 6 2.1585 -0.8903 -3.6146 7 6 2.9532 -2.0141 -3.4878 8 6 3.4548 -2.7252 -4.7183 9 7 2.4865 -3.7554 -5.1174 10 6 2.4040 -4.8196 -4.1081 11 6 2.8188 -4.3068 -6.4378 12 1 3.8203 -4.7362 -6.4108 13 6 2.7705 -3.1908 -7.4834 14 6 1.8073 -5.3942 -6.8056 15 6 2.1939 -6.0148 -8.1233 16 1 3.0416 -5.6323 -8.6724 17 6 1.4652 -7.0709 -8.6281 18 7 0.4331 -7.5369 -7.9595 19 14 1.9439 -7.8397 -10.2619 20 1 3.1320 -7.1375 -10.8102 21 1 2.2669 -9.2747 -10.0579 22 1 0.8131 -7.7177 -11.2166 23 6 3.2874 -2.4863 -2.2323 24 6 2.8274 -1.8341 -1.1036 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.0689 0.6339 -2.5851 33 1 1.8969 -0.5217 -4.5956 34 1 3.5758 -2.0068 -5.5290 35 1 4.4148 -3.1934 -4.5014 36 1 2.2053 -4.3791 -3.1311 37 1 1.5978 -5.5054 -4.3683 38 1 3.3479 -5.3638 -4.0761 39 1 3.4911 -2.4160 -7.2214 40 1 3.0166 -3.6000 -8.4632 41 1 1.7691 -2.7613 -7.5104 42 1 1.8006 -6.1610 -6.0309 43 1 0.8140 -4.9533 -6.8890 44 1 -0.0794 -8.2800 -8.3144 45 1 3.9080 -3.3646 -2.1332 46 1 3.0882 -2.2032 -0.1227 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411162927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:25 Heat of formation + Delta-G solvation = 5.335298 kcal Electronic energy + Delta-G solvation = -21150.757148 eV Core-core repulsion = 18232.347830 eV Total energy + Delta-G solvation = -2918.409318 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.74423 -37.66455 -35.47334 -33.14725 -31.35045 -30.91427 -29.73310 -27.72369 -27.32848 -25.92125 -24.01956 -23.17006 -22.66082 -21.31574 -19.89060 -18.93981 -16.60993 -16.36878 -15.63765 -15.11852 -14.70837 -14.51820 -14.46591 -13.95792 -13.87599 -13.64439 -13.32293 -13.24831 -12.86937 -12.53483 -12.24186 -11.97940 -11.82657 -11.68419 -11.57239 -11.36047 -11.25673 -11.20054 -10.87663 -10.85323 -10.75553 -10.62645 -10.38630 -10.27319 -9.89796 -9.22674 -9.02440 -8.77382 -8.41612 -8.31972 -7.63777 -5.98209 -3.99646 1.43538 1.53161 3.31513 3.39145 3.42643 3.80866 4.44941 4.54760 4.65857 4.73667 5.02190 5.03924 5.08764 5.10867 5.28170 5.37640 5.42132 5.46053 5.54264 5.63190 5.65981 5.77536 5.77856 5.81712 5.90389 5.96959 6.02822 6.06283 6.12059 6.16967 6.23365 6.27439 6.35599 6.52960 6.59731 6.68623 6.71648 6.81294 6.94763 7.11687 7.13042 7.58048 7.64654 7.83082 7.90310 8.10111 8.46095 9.06889 9.63471 11.13292 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.038042 B = 0.003107 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.844395 B = 9008.989573 C = 9157.925717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.085 4.085 5 C -0.116 4.116 6 C -0.097 4.097 7 C -0.068 4.068 8 C 0.084 3.916 9 N -0.531 5.531 10 C 0.023 3.977 11 C 0.085 3.915 12 H 0.026 0.974 13 C -0.131 4.131 14 C 0.030 3.970 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.112 4.112 24 C -0.121 4.121 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.084 0.916 35 H 0.033 0.967 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.017 0.983 39 H 0.031 0.969 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.259 0.741 45 H 0.117 0.883 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 15.521 15.175 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.200 4.200 4 C -0.085 4.085 5 C -0.134 4.134 6 C -0.115 4.115 7 C -0.068 4.068 8 C -0.043 4.043 9 N -0.256 5.256 10 C -0.125 4.125 11 C -0.022 4.022 12 H 0.044 0.956 13 C -0.189 4.189 14 C -0.007 4.007 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.131 4.131 24 C -0.139 4.139 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.036 0.964 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.069 0.931 45 H 0.135 0.865 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.373 15.601 15.110 21.979 hybrid contribution 0.964 -1.031 -0.844 1.645 sum 4.337 14.570 14.265 20.847 Atomic orbital electron populations 1.21858 0.94410 1.02152 1.01732 1.20098 0.95920 0.95871 0.95490 1.21853 1.01131 0.95301 1.01750 1.19767 0.98244 0.96043 0.94494 1.20900 1.00438 1.00160 0.91948 1.21010 0.96724 0.95298 0.98513 1.19861 0.97338 0.95173 0.94435 1.21142 0.93285 0.95297 0.94592 1.62137 1.47455 1.12743 1.03227 1.22452 1.00761 0.94270 0.95052 1.21866 0.98605 0.95860 0.85888 0.95551 1.21790 1.00719 0.96988 0.99389 1.19197 0.93751 0.91563 0.96167 1.21252 1.13487 1.15466 1.05239 0.92580 1.24995 0.95112 0.96939 0.97353 1.69976 1.18703 1.26225 1.38421 0.86573 0.78420 0.79112 0.84111 1.19793 1.21107 1.21037 1.21042 1.00452 0.99454 0.92135 1.20950 0.98874 0.95849 0.98220 0.92428 0.92645 0.92397 0.90781 0.92441 0.92630 0.92642 0.86518 0.86045 0.89817 0.94848 0.92283 0.90242 0.96431 0.94963 0.91516 0.92645 0.96015 0.95974 0.93105 0.86497 0.86602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.00 37.16 0.33 -0.88 16 2 C -0.06 -0.49 3.09 -91.77 -0.28 -0.77 16 3 C -0.14 -1.10 9.01 37.16 0.33 -0.77 16 4 C -0.09 -0.95 4.78 -104.62 -0.50 -1.45 16 5 C -0.12 -1.37 8.71 -39.59 -0.34 -1.72 16 6 C -0.10 -1.29 9.70 -39.59 -0.38 -1.67 16 7 C -0.07 -0.96 4.90 -104.62 -0.51 -1.47 16 8 C 0.08 1.31 4.95 -4.97 -0.02 1.28 16 9 N -0.53 -9.91 4.62 -236.33 -1.09 -11.00 16 10 C 0.02 0.41 8.71 60.06 0.52 0.93 16 11 C 0.08 1.79 2.12 -67.71 -0.14 1.65 16 12 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 13 C -0.13 -2.52 8.81 37.16 0.33 -2.20 16 14 C 0.03 0.79 4.17 -27.89 -0.12 0.67 16 15 C -0.52 -14.42 8.46 -34.44 -0.29 -14.71 16 16 H 0.06 1.52 6.81 -52.48 -0.36 1.17 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 19 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.11 -1.46 7.88 -39.58 -0.31 -1.77 16 24 C -0.12 -1.41 9.67 -39.58 -0.38 -1.79 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.49 7.37 -51.93 -0.38 0.11 16 28 H 0.07 0.61 7.88 -51.93 -0.41 0.20 16 29 H 0.06 0.44 7.41 -51.93 -0.38 0.06 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.12 1.17 7.10 -52.49 -0.37 0.80 16 33 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 34 H 0.08 1.25 5.81 -51.93 -0.30 0.95 16 35 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 36 H 0.06 0.95 5.70 -51.93 -0.30 0.66 16 37 H 0.08 1.60 6.32 -51.93 -0.33 1.28 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.03 0.52 6.23 -51.93 -0.32 0.20 16 40 H 0.07 1.35 6.76 -51.93 -0.35 0.99 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.02 0.60 6.21 -51.93 -0.32 0.27 16 43 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.12 1.43 7.93 -52.49 -0.42 1.01 16 46 H 0.12 1.13 7.95 -52.49 -0.42 0.71 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -29.87 357.24 -9.89 -39.76 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.02 Total: -1.51 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -1.87 Total: -23.12 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.36 Total: -37.15 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.87 -9.89 -39.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411162927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.097 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds