Wall clock time and date at job start Mon Mar 30 2020 01:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.50701 * 109.46989 * 240.00072 * 2 1 3 5 5 C 1.38230 * 120.00158 * 59.72914 * 4 2 1 6 6 C 1.38231 * 119.99948 * 179.76803 * 5 4 2 7 7 C 1.38231 * 120.00117 * 0.50191 * 6 5 4 8 8 C 1.50705 * 120.00545 * 179.72704 * 7 6 5 9 9 N 1.46906 * 109.47000 * 270.02563 * 8 7 6 10 10 C 1.46899 * 110.99963 * 293.94957 * 9 8 7 11 11 C 1.46901 * 110.99969 * 169.99715 * 9 8 7 12 12 H 1.09001 * 109.47347 * 58.83091 * 11 9 8 13 13 C 1.53005 * 109.46853 * 298.83295 * 11 9 8 14 14 C 1.52994 * 109.47022 * 178.83823 * 11 9 8 15 15 C 1.50699 * 109.47121 * 183.24409 * 14 11 9 16 16 H 1.08003 * 119.99932 * 356.65949 * 15 14 11 17 17 C 1.37878 * 120.00273 * 176.67185 * 15 14 11 18 18 N 1.31513 * 120.00096 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00159 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46933 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47172 * 119.99596 * 19 17 15 22 22 H 1.48500 * 109.46960 * 239.99744 * 19 17 15 23 23 C 1.38237 * 120.00011 * 359.75176 * 7 6 5 24 24 C 1.38232 * 119.99849 * 359.97438 * 23 7 6 25 25 H 1.09000 * 109.47046 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46850 * 300.00013 * 1 2 3 27 27 H 1.08999 * 109.46853 * 59.99705 * 1 2 3 28 28 H 1.08999 * 109.47348 * 120.00108 * 2 1 3 29 29 H 1.09002 * 109.46722 * 299.99883 * 3 2 1 30 30 H 1.09000 * 109.46793 * 59.99897 * 3 2 1 31 31 H 1.09001 * 109.46863 * 179.97438 * 3 2 1 32 32 H 1.07998 * 120.00017 * 359.97438 * 5 4 2 33 33 H 1.08009 * 120.00221 * 180.22566 * 6 5 4 34 34 H 1.09002 * 109.46725 * 30.01977 * 8 7 6 35 35 H 1.08990 * 109.47381 * 150.02027 * 8 7 6 36 36 H 1.09001 * 109.47083 * 53.28454 * 10 9 8 37 37 H 1.08999 * 109.47139 * 173.28595 * 10 9 8 38 38 H 1.08998 * 109.46802 * 293.28895 * 10 9 8 39 39 H 1.09000 * 109.47059 * 60.00312 * 13 11 9 40 40 H 1.09003 * 109.46845 * 180.02562 * 13 11 9 41 41 H 1.08994 * 109.47292 * 300.00284 * 13 11 9 42 42 H 1.09005 * 109.46719 * 303.23696 * 14 11 9 43 43 H 1.09000 * 109.47713 * 63.23599 * 14 11 9 44 44 H 0.96995 * 120.00721 * 180.02562 * 18 17 15 45 45 H 1.08001 * 120.00310 * 179.97438 * 23 7 6 46 46 H 1.08001 * 120.00101 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6938 -0.2414 -2.4860 6 6 2.1585 -0.8903 -3.6146 7 6 2.9532 -2.0141 -3.4878 8 6 3.4548 -2.7252 -4.7183 9 7 2.4865 -3.7554 -5.1174 10 6 2.4040 -4.8196 -4.1081 11 6 2.8188 -4.3068 -6.4378 12 1 3.8203 -4.7362 -6.4108 13 6 2.7705 -3.1908 -7.4834 14 6 1.8073 -5.3942 -6.8056 15 6 2.1939 -6.0148 -8.1233 16 1 3.0416 -5.6323 -8.6724 17 6 1.4652 -7.0709 -8.6281 18 7 0.4331 -7.5369 -7.9595 19 14 1.9439 -7.8397 -10.2619 20 1 3.1320 -7.1375 -10.8102 21 1 2.2669 -9.2747 -10.0579 22 1 0.8131 -7.7177 -11.2166 23 6 3.2874 -2.4863 -2.2323 24 6 2.8274 -1.8341 -1.1036 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.0689 0.6339 -2.5851 33 1 1.8969 -0.5217 -4.5956 34 1 3.5758 -2.0068 -5.5290 35 1 4.4148 -3.1934 -4.5014 36 1 2.2053 -4.3791 -3.1311 37 1 1.5978 -5.5054 -4.3683 38 1 3.3479 -5.3638 -4.0761 39 1 3.4911 -2.4160 -7.2214 40 1 3.0166 -3.6000 -8.4632 41 1 1.7691 -2.7613 -7.5104 42 1 1.8006 -6.1610 -6.0309 43 1 0.8140 -4.9533 -6.8890 44 1 -0.0794 -8.2800 -8.3144 45 1 3.9080 -3.3646 -2.1332 46 1 3.0882 -2.2032 -0.1227 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411162927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:24 Heat of formation + Delta-G solvation = -9.825126 kcal Electronic energy + Delta-G solvation = -21151.414554 eV Core-core repulsion = 18232.347830 eV Total energy + Delta-G solvation = -2919.066723 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.74132 -39.07600 -36.45031 -35.06421 -32.97157 -31.88260 -30.96089 -29.44731 -27.93957 -27.40266 -25.64837 -24.68520 -23.68983 -22.44671 -20.74309 -20.64528 -18.67314 -17.33082 -16.82321 -16.56935 -16.16783 -16.00578 -15.83178 -15.15640 -14.90495 -14.53653 -14.38715 -14.31425 -14.15671 -14.05851 -13.50272 -13.26564 -13.12625 -13.08150 -12.84019 -12.79218 -12.67885 -12.52682 -12.24731 -12.13356 -11.97665 -11.91147 -11.79795 -11.46796 -11.44831 -11.15303 -11.01165 -10.52860 -9.73284 -9.44149 -9.11048 -8.17936 -6.27500 0.46150 0.57736 1.39942 1.40367 1.53255 2.40851 2.78577 3.15701 3.32439 3.76874 3.89269 3.99083 4.12464 4.19809 4.28097 4.31841 4.36986 4.42877 4.51262 4.57678 4.63581 4.66031 4.67626 4.78947 4.83663 4.84597 5.00560 5.03134 5.04463 5.09582 5.12657 5.20201 5.24318 5.27010 5.38711 5.41385 5.42658 5.50902 5.58749 5.71168 5.78856 5.80296 5.81832 6.12314 6.17764 6.31989 6.38750 6.88921 7.40702 8.94550 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.038042 B = 0.003107 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.844395 B = 9008.989573 C = 9157.925717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.141 4.141 4 C -0.083 4.083 5 C -0.120 4.120 6 C -0.109 4.109 7 C -0.087 4.087 8 C 0.090 3.910 9 N -0.540 5.540 10 C 0.030 3.970 11 C 0.094 3.906 12 H 0.021 0.979 13 C -0.123 4.123 14 C 0.040 3.960 15 C -0.531 4.531 16 H 0.063 0.937 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.963 3.037 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.121 4.121 24 C -0.126 4.126 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.020 0.980 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.047 0.953 42 H -0.004 1.004 43 H -0.012 1.012 44 H 0.262 0.738 45 H 0.122 0.878 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.916 16.961 15.783 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.198 4.198 4 C -0.083 4.083 5 C -0.138 4.138 6 C -0.128 4.128 7 C -0.088 4.088 8 C -0.037 4.037 9 N -0.265 5.265 10 C -0.118 4.118 11 C -0.014 4.014 12 H 0.039 0.961 13 C -0.181 4.181 14 C 0.003 3.997 15 C -0.569 4.569 16 H 0.081 0.919 17 C -0.198 4.198 18 N -0.574 5.574 19 Si 0.787 3.213 20 H -0.184 1.184 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.139 4.139 24 C -0.144 4.144 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.038 0.962 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.014 0.986 43 H 0.006 0.994 44 H 0.071 0.929 45 H 0.139 0.861 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.336 17.059 15.726 23.603 hybrid contribution 0.634 -1.426 -0.920 1.812 sum 4.970 15.632 14.806 22.097 Atomic orbital electron populations 1.21854 0.94065 1.01680 1.02486 1.20159 0.96127 0.96432 0.94584 1.21835 1.00948 0.94524 1.02495 1.20113 0.97253 0.95692 0.95291 1.21116 1.00359 1.00546 0.91781 1.21144 0.96940 0.95441 0.99251 1.19785 0.98831 0.95952 0.94190 1.21140 0.92626 0.94297 0.95662 1.62065 1.48984 1.13161 1.02240 1.22340 0.99691 0.93905 0.95831 1.21589 0.96423 0.95291 0.88058 0.96082 1.21692 1.01306 0.97009 0.98067 1.19009 0.93420 0.92232 0.95059 1.21642 1.13588 1.15669 1.06007 0.91890 1.25942 0.94977 0.97571 1.01330 1.70118 1.19964 1.26898 1.40445 0.85433 0.78482 0.78133 0.79209 1.18442 1.20590 1.20537 1.21170 1.00706 0.99833 0.92200 1.21234 0.98568 0.95838 0.98751 0.93502 0.90994 0.92611 0.89875 0.92525 0.91122 0.92913 0.84904 0.85952 0.89175 0.94378 0.90250 0.93319 0.96176 0.91542 0.92626 0.93389 0.98593 0.99365 0.92930 0.86051 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.00 71.98 0.65 -1.45 16 2 C -0.05 -0.83 3.09 -11.54 -0.04 -0.86 16 3 C -0.14 -1.80 9.01 71.98 0.65 -1.15 16 4 C -0.08 -1.70 4.78 -19.87 -0.09 -1.79 16 5 C -0.12 -2.64 8.71 22.27 0.19 -2.44 16 6 C -0.11 -2.80 9.70 22.27 0.22 -2.58 16 7 C -0.09 -2.38 4.90 -19.86 -0.10 -2.48 16 8 C 0.09 2.70 4.95 85.56 0.42 3.12 16 9 N -0.54 -20.29 4.62 -901.60 -4.17 -24.45 16 10 C 0.03 1.13 8.71 127.69 1.11 2.24 16 11 C 0.09 4.02 2.12 44.91 0.10 4.12 16 12 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 13 C -0.12 -4.68 8.81 71.98 0.63 -4.04 16 14 C 0.04 2.17 4.17 29.85 0.12 2.29 16 15 C -0.53 -30.20 8.46 25.60 0.22 -29.98 16 16 H 0.06 3.42 6.81 -2.91 -0.02 3.40 16 17 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 18 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 19 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 23 C -0.12 -2.98 7.88 22.27 0.18 -2.80 16 24 C -0.13 -2.70 9.67 22.27 0.22 -2.49 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.83 7.37 -2.39 -0.02 0.81 16 28 H 0.08 1.13 7.88 -2.39 -0.02 1.11 16 29 H 0.06 0.73 7.41 -2.39 -0.02 0.72 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.13 2.41 7.10 -2.91 -0.02 2.39 16 33 H 0.12 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.09 2.56 5.81 -2.39 -0.01 2.54 16 35 H 0.04 1.11 8.06 -2.39 -0.02 1.09 16 36 H 0.08 2.57 5.70 -2.39 -0.01 2.55 16 37 H 0.05 2.07 6.32 -2.39 -0.02 2.06 16 38 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 2.05 6.23 -2.39 -0.01 2.03 16 40 H 0.05 2.21 6.76 -2.39 -0.02 2.19 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.00 -0.25 6.21 -2.38 -0.01 -0.26 16 43 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 44 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.12 2.81 7.93 -2.91 -0.02 2.79 16 46 H 0.14 2.30 7.95 -2.91 -0.02 2.28 16 Total: -1.00 -65.01 357.24 4.01 -61.00 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.92 Total: 14.00 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 4.94 Total: -39.88 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -3.88 Total: -81.80 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -65.01 4.01 -61.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411162927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.176 kcal (2) G-P(sol) polarization free energy of solvation -65.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds