Wall clock time and date at job start Mon Mar 30 2020 01:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99857 * 2 1 4 4 H 1.48507 * 109.47243 * 270.00112 * 3 2 1 5 5 H 1.48505 * 109.47175 * 30.00025 * 3 2 1 6 6 H 1.48496 * 109.47465 * 150.00028 * 3 2 1 7 7 C 1.37878 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99800 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00111 * 359.97438 * 7 2 1 10 10 S 1.81397 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.81401 * 102.99785 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47002 * 179.97438 * 11 10 9 13 13 C 1.38225 * 119.99825 * 269.72284 * 12 11 10 14 14 C 1.38335 * 119.99500 * 179.71987 * 13 12 11 15 15 Cl 1.73606 * 119.99515 * 180.29890 * 14 13 12 16 16 C 1.38370 * 120.00431 * 0.57860 * 14 13 12 17 17 C 1.38180 * 119.99469 * 359.69826 * 16 14 13 18 18 C 1.38327 * 119.99963 * 89.99880 * 12 11 10 19 19 Cl 1.73600 * 120.00168 * 0.02562 * 18 12 11 20 20 H 0.96993 * 120.00403 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46640 * 60.00582 * 9 7 2 22 22 H 1.09000 * 109.47094 * 300.01049 * 9 7 2 23 23 H 1.09002 * 109.47085 * 299.99903 * 11 10 9 24 24 H 1.09001 * 109.47417 * 60.00029 * 11 10 9 25 25 H 1.07998 * 119.99961 * 0.02562 * 13 12 11 26 26 H 1.07991 * 120.00431 * 179.67549 * 16 14 13 27 27 H 1.08008 * 119.99940 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 16 2.4300 -3.8779 -0.0005 11 6 1.3518 -5.3366 -0.0013 12 6 2.1958 -6.5851 -0.0020 13 6 2.5780 -7.1603 -1.1994 14 6 3.3576 -8.3030 -1.2000 15 17 3.8442 -9.0209 -2.7040 16 6 3.7448 -8.8771 -0.0021 17 6 3.3579 -8.3054 1.1949 18 6 2.5832 -7.1588 1.1956 19 17 2.0966 -6.4409 2.6994 20 1 -0.4850 0.8399 0.0004 21 1 0.6243 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 0.7223 -5.3237 0.8885 24 1 0.7229 -5.3232 -0.8915 25 1 2.2722 -6.7147 -2.1344 26 1 4.3490 -9.7722 -0.0026 27 1 3.6597 -8.7537 2.1300 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010191.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:51 Heat of formation + Delta-G solvation = -7.071208 kcal Electronic energy + Delta-G solvation = -13844.247427 eV Core-core repulsion = 11165.278268 eV Total energy + Delta-G solvation = -2678.969159 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 275.984 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.61906 -36.85872 -36.22753 -33.16062 -32.94043 -30.67595 -28.57687 -27.13810 -23.16475 -22.92602 -21.70297 -17.37991 -16.49790 -16.18443 -15.87754 -15.34754 -14.70321 -14.27572 -13.94468 -13.48001 -13.12813 -12.76521 -12.44793 -12.33284 -12.16895 -12.03738 -11.66687 -11.12052 -11.03944 -10.88585 -10.79515 -10.66768 -10.20527 -9.61869 -9.06453 -8.87311 -8.62440 -8.56723 -6.71046 -6.20505 -4.24724 0.77962 0.95825 1.87265 2.16265 2.58150 3.25769 3.31437 3.36424 3.46778 3.80132 4.34821 4.47448 4.54887 4.90226 5.03295 5.16769 5.20644 5.40709 5.62960 5.79503 5.90016 5.95802 6.15246 6.41513 7.07467 7.09557 7.73947 7.99517 8.77036 9.38386 10.90762 Molecular weight = 275.98amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.004325 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.929767 B = 6471.967415 C = 7274.258441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.511 4.511 8 H 0.067 0.933 9 C 0.089 3.911 10 S -0.283 6.283 11 C -0.065 4.065 12 C -0.032 4.032 13 C -0.085 4.085 14 C -0.031 4.031 15 Cl -0.067 7.067 16 C -0.105 4.105 17 C -0.099 4.099 18 C -0.022 4.022 19 Cl -0.048 7.048 20 H 0.265 0.735 21 H 0.036 0.964 22 H 0.037 0.963 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.145 0.855 26 H 0.140 0.860 27 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.454 -18.634 0.204 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.551 4.551 8 H 0.085 0.915 9 C -0.057 4.057 10 S -0.054 6.054 11 C -0.212 4.212 12 C -0.034 4.034 13 C -0.106 4.106 14 C -0.058 4.058 15 Cl -0.038 7.038 16 C -0.125 4.125 17 C -0.118 4.118 18 C -0.051 4.051 19 Cl -0.019 7.019 20 H 0.075 0.925 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.111 0.889 24 H 0.107 0.893 25 H 0.162 0.838 26 H 0.158 0.842 27 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.370 -18.436 0.211 19.203 hybrid contribution -0.970 0.887 -0.024 1.315 sum 4.400 -17.549 0.187 18.093 Atomic orbital electron populations 1.69949 1.06131 1.27352 1.49667 1.24957 0.94971 0.99251 0.94646 0.86355 0.79765 0.82209 0.78361 1.20331 1.20969 1.19537 1.20658 0.93468 0.88667 1.52288 0.91472 1.21086 0.93746 0.90774 1.00142 1.86862 1.19980 1.00572 1.98016 1.22290 0.99372 0.93583 1.05927 1.19228 0.97866 0.95243 0.91099 1.20922 0.97121 0.93987 0.98530 1.20904 1.01006 0.96435 0.87419 1.98375 1.90508 1.82888 1.32036 1.20938 1.00795 1.00735 0.90028 1.20956 0.97578 0.94527 0.98746 1.20909 1.00572 0.95863 0.87717 1.98397 1.90053 1.83024 1.30433 0.92490 0.94571 0.94522 0.88914 0.89327 0.83772 0.84202 0.84009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.14 15 2 C 0.07 1.83 5.46 -17.82 -0.10 1.74 15 3 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 15 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.51 -14.38 9.13 -34.44 -0.31 -14.69 15 8 H 0.07 1.90 7.71 -52.49 -0.40 1.49 15 9 C 0.09 2.30 5.70 36.01 0.21 2.50 15 10 S -0.28 -6.07 21.64 -107.50 -2.33 -8.40 15 11 C -0.06 -1.08 5.67 36.01 0.20 -0.88 15 12 C -0.03 -0.47 5.14 -104.59 -0.54 -1.00 15 13 C -0.09 -1.11 9.48 -39.55 -0.38 -1.48 15 14 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 15 15 Cl -0.07 -0.71 28.96 -51.86 -1.50 -2.21 15 16 C -0.11 -1.07 9.83 -39.55 -0.39 -1.46 15 17 C -0.10 -1.07 9.83 -39.55 -0.39 -1.46 15 18 C -0.02 -0.30 6.31 -39.50 -0.25 -0.54 15 19 Cl -0.05 -0.68 27.30 -51.86 -1.42 -2.09 15 20 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 21 H 0.04 0.96 8.14 -51.92 -0.42 0.54 15 22 H 0.04 0.98 8.14 -51.92 -0.42 0.56 15 23 H 0.09 1.54 6.90 -51.92 -0.36 1.18 15 24 H 0.09 1.39 8.08 -51.92 -0.42 0.97 15 25 H 0.14 1.78 8.06 -52.49 -0.42 1.36 15 26 H 0.14 1.06 8.06 -52.49 -0.42 0.64 15 27 H 0.14 1.18 8.06 -52.48 -0.42 0.76 15 LS Contribution 286.38 15.07 4.32 4.32 Total: -1.00 -28.97 286.38 -9.84 -38.80 By element: Atomic # 1 Polarization: -1.32 SS G_CDS: -2.43 Total: -3.75 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -2.19 Total: -17.89 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.74 Total: -25.14 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -6.07 SS G_CDS: -2.33 Total: -8.40 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -2.92 Total: -4.30 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.97 -9.84 -38.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010191.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.733 kcal (2) G-P(sol) polarization free energy of solvation -28.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds