Wall clock time and date at job start Mon Mar 30 2020 01:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00255 * 2 1 4 4 H 1.48498 * 109.47478 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46947 * 300.00025 * 3 2 1 6 6 H 1.48498 * 109.46978 * 59.99296 * 3 2 1 7 7 C 1.37878 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99862 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00252 * 0.02562 * 7 2 1 10 10 S 1.81394 * 109.47203 * 179.97438 * 9 7 2 11 11 C 1.81408 * 102.99810 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46846 * 180.02562 * 11 10 9 13 13 C 1.38217 * 119.98796 * 269.72004 * 12 11 10 14 14 C 1.38353 * 120.01302 * 179.76612 * 13 12 11 15 15 Cl 1.73604 * 120.00920 * 180.27926 * 14 13 12 16 16 C 1.38327 * 119.98737 * 0.54085 * 14 13 12 17 17 C 1.38334 * 119.97451 * 359.71742 * 16 14 13 18 18 Cl 1.73595 * 120.00688 * 179.97438 * 17 16 14 19 19 C 1.38215 * 119.98370 * 90.00214 * 12 11 10 20 20 H 0.97000 * 120.00020 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.46634 * 59.99740 * 9 7 2 22 22 H 1.08997 * 109.46782 * 299.99857 * 9 7 2 23 23 H 1.09000 * 109.46602 * 60.00357 * 11 10 9 24 24 H 1.09000 * 109.47286 * 300.00088 * 11 10 9 25 25 H 1.08009 * 119.99089 * 0.02562 * 13 12 11 26 26 H 1.08000 * 120.01594 * 179.69947 * 16 14 13 27 27 H 1.08003 * 120.00001 * 359.97438 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3515 -5.3367 0.0013 12 6 2.1956 -6.5852 0.0020 13 6 2.5777 -7.1615 -1.1948 14 6 3.3566 -8.3049 -1.1947 15 17 3.8425 -9.0245 -2.6980 16 6 3.7436 -8.8778 0.0034 17 6 3.3564 -8.3037 1.2009 18 17 3.8411 -9.0223 2.7050 19 6 2.5824 -7.1568 1.1995 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 0.7221 -5.3236 -0.8885 24 1 0.7226 -5.3232 0.8915 25 1 2.2716 -6.7167 -2.1302 26 1 4.3475 -9.7732 0.0039 27 1 2.2801 -6.7085 2.1345 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017339.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:47 Heat of formation + Delta-G solvation = -9.328385 kcal Electronic energy + Delta-G solvation = -13646.337346 eV Core-core repulsion = 10967.270308 eV Total energy + Delta-G solvation = -2679.067037 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 275.984 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.64071 -36.90145 -36.52583 -33.19615 -32.80973 -30.77510 -28.62259 -27.23590 -23.18899 -22.93893 -21.74564 -17.41117 -16.50758 -16.14273 -15.84593 -15.38633 -14.69086 -14.54210 -14.04335 -13.56963 -13.11776 -12.77916 -12.49608 -12.46480 -12.11898 -12.06178 -11.69313 -11.23921 -11.15636 -11.10186 -10.92723 -10.69059 -10.18602 -9.63113 -9.02621 -8.86851 -8.74747 -8.66347 -6.79848 -6.24115 -4.28501 0.82290 0.86623 1.64785 2.11933 2.50633 3.22468 3.29930 3.35635 3.46326 3.74143 4.32069 4.44560 4.80112 4.84459 4.98969 5.06857 5.13372 5.34727 5.52380 5.80082 5.87083 5.92455 6.26559 6.39934 7.02443 7.04101 7.70673 7.95351 8.73680 9.35079 10.87118 Molecular weight = 275.98amu Principal moments of inertia in cm(-1) A = 0.023022 B = 0.003785 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.942614 B = 7395.522623 C = 8154.171997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.512 4.512 8 H 0.068 0.932 9 C 0.089 3.911 10 S -0.289 6.289 11 C -0.060 4.060 12 C -0.027 4.027 13 C -0.091 4.091 14 C -0.022 4.022 15 Cl -0.062 7.062 16 C -0.110 4.110 17 C -0.022 4.022 18 Cl -0.062 7.062 19 C -0.091 4.091 20 H 0.265 0.735 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.143 0.857 26 H 0.141 0.859 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.383 -18.571 0.009 19.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.552 4.552 8 H 0.086 0.914 9 C -0.058 4.058 10 S -0.060 6.060 11 C -0.207 4.207 12 C -0.029 4.029 13 C -0.112 4.112 14 C -0.049 4.049 15 Cl -0.033 7.033 16 C -0.130 4.130 17 C -0.049 4.049 18 Cl -0.033 7.033 19 C -0.112 4.112 20 H 0.075 0.925 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.160 0.840 26 H 0.159 0.841 27 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.394 -18.509 0.008 19.279 hybrid contribution -0.881 0.761 0.000 1.164 sum 4.512 -17.748 0.008 18.313 Atomic orbital electron populations 1.69957 1.06140 1.27304 1.49658 1.24963 0.94982 0.99301 0.94597 0.86294 0.80118 0.82488 0.77773 1.19384 1.20701 1.20695 1.20700 0.93519 0.88641 1.52304 0.91397 1.21108 0.93706 0.90792 1.00210 1.86947 1.20201 1.00861 1.98019 1.22240 0.99170 0.93542 1.05737 1.19275 0.97049 0.94637 0.91908 1.21075 0.96949 0.93868 0.99287 1.20635 1.00928 0.96311 0.87022 1.98379 1.90550 1.82864 1.31516 1.20813 1.01626 1.01251 0.89289 1.20639 1.00975 0.96276 0.87017 1.98378 1.90584 1.82902 1.31437 1.21076 0.96969 0.93840 0.99284 0.92504 0.94486 0.94480 0.89243 0.89248 0.83957 0.84069 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.77 15 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 15 3 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 15 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 7 C -0.51 -14.17 9.13 -34.44 -0.31 -14.49 15 8 H 0.07 1.89 7.71 -52.48 -0.40 1.49 15 9 C 0.09 2.22 5.70 36.01 0.21 2.43 15 10 S -0.29 -5.99 21.64 -107.50 -2.33 -8.32 15 11 C -0.06 -0.92 6.07 36.01 0.22 -0.71 15 12 C -0.03 -0.37 5.14 -104.64 -0.54 -0.90 15 13 C -0.09 -1.16 9.48 -39.55 -0.38 -1.53 15 14 C -0.02 -0.26 6.32 -39.51 -0.25 -0.51 15 15 Cl -0.06 -0.66 28.96 -51.86 -1.50 -2.16 15 16 C -0.11 -1.21 9.61 -39.51 -0.38 -1.59 15 17 C -0.02 -0.26 6.32 -39.50 -0.25 -0.51 15 18 Cl -0.06 -0.66 28.96 -51.86 -1.50 -2.16 15 19 C -0.09 -1.16 9.48 -39.54 -0.38 -1.53 15 20 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 21 H 0.04 0.96 8.14 -51.92 -0.42 0.54 15 22 H 0.04 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.09 1.31 8.08 -51.92 -0.42 0.89 15 24 H 0.09 1.31 8.08 -51.92 -0.42 0.89 15 25 H 0.14 1.70 8.06 -52.48 -0.42 1.28 15 26 H 0.14 1.30 8.06 -52.49 -0.42 0.88 15 27 H 0.14 1.71 8.06 -52.48 -0.42 1.28 15 LS Contribution 289.06 15.07 4.36 4.36 Total: -1.00 -28.06 289.06 -9.91 -37.96 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: -2.49 Total: -3.36 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -2.15 Total: -17.64 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.74 Total: -24.77 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -2.33 Total: -8.32 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -3.00 Total: -4.33 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.06 -9.91 -37.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017339.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.637 kcal (2) G-P(sol) polarization free energy of solvation -28.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds