Wall clock time and date at job start Mon Mar 30 2020 01:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99756 * 2 1 4 4 H 1.48503 * 109.47289 * 269.99498 * 3 2 1 5 5 H 1.48506 * 109.47493 * 30.00091 * 3 2 1 6 6 H 1.48508 * 109.47166 * 150.00026 * 3 2 1 7 7 C 1.37880 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99656 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00188 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47260 * 300.00036 * 9 7 2 11 11 O 1.42900 * 109.47360 * 59.99715 * 9 7 2 12 12 C 1.53002 * 109.47081 * 180.02562 * 9 7 2 13 13 S 1.81402 * 109.46996 * 180.02562 * 12 9 7 14 14 C 1.76203 * 102.99970 * 179.97438 * 13 12 9 15 15 C 1.38956 * 120.05007 * 179.97438 * 14 13 12 16 16 C 1.38102 * 119.96947 * 179.72169 * 15 14 13 17 17 C 1.38473 * 120.06263 * 0.25636 * 16 15 14 18 18 F 1.35100 * 119.94763 * 179.97438 * 17 16 15 19 19 C 1.38569 * 120.10105 * 0.02562 * 17 16 15 20 20 Cl 1.73602 * 119.98339 * 179.97438 * 19 17 16 21 21 C 1.38216 * 120.03309 * 359.97438 * 19 17 16 22 22 H 0.96994 * 119.99921 * 359.97438 * 1 2 3 23 23 H 0.96703 * 113.99429 * 60.00262 * 11 9 7 24 24 H 1.08999 * 109.47466 * 60.00003 * 12 9 7 25 25 H 1.09003 * 109.46691 * 299.99326 * 12 9 7 26 26 H 1.08002 * 120.01913 * 0.02562 * 15 14 13 27 27 H 1.07996 * 119.96767 * 180.23239 * 16 15 14 28 28 H 1.07994 * 120.03614 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4300 -2.5751 -1.1665 12 6 2.2454 -3.6620 0.0018 13 16 1.3384 -5.2330 0.0011 14 6 2.6271 -6.4347 0.0019 15 6 2.3157 -7.7889 0.0021 16 6 3.3270 -8.7294 -0.0030 17 6 4.6511 -8.3241 -0.0030 18 9 5.6386 -9.2461 -0.0075 19 6 4.9648 -6.9744 0.0027 20 17 6.6258 -6.4697 0.0033 21 6 3.9559 -6.0297 0.0078 22 1 -0.4850 0.8400 0.0004 23 1 0.9225 -2.5300 -1.9975 24 1 2.8714 -3.6039 0.8922 25 1 2.8727 -3.6047 -0.8878 26 1 1.2832 -8.1060 0.0014 27 1 3.0850 -9.7818 -0.0066 28 1 4.2003 -4.9778 0.0118 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436477557.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:04 Heat of formation + Delta-G solvation = -84.705039 kcal Electronic energy + Delta-G solvation = -16077.834962 eV Core-core repulsion = 12967.162973 eV Total energy + Delta-G solvation = -3110.671989 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.013 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.03083 -39.03844 -36.65252 -36.04827 -32.28213 -31.42899 -30.58259 -29.74548 -25.55608 -23.28566 -23.04535 -21.12557 -18.16820 -17.45941 -17.14108 -16.65352 -15.85682 -15.08754 -14.75906 -14.60124 -14.38190 -14.35244 -13.87511 -13.59948 -13.25524 -13.00908 -12.10914 -12.00535 -11.67639 -11.57017 -11.32779 -11.13018 -10.99263 -10.85236 -10.24181 -9.92514 -9.54920 -9.28597 -9.10705 -8.73362 -8.42131 -7.15454 -6.16420 -4.37311 0.77009 0.88680 1.71383 1.89482 2.82726 3.19688 3.21461 3.27453 3.29668 3.96789 4.27572 4.46492 4.88079 4.98789 5.10780 5.28033 5.45405 5.59389 5.72323 5.76371 5.86526 5.99140 6.10147 6.44369 6.46580 7.43563 7.65627 7.92127 8.63776 9.18505 9.39715 10.87542 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.004385 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.525362 B = 6384.565183 C = 7362.044664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.082 3.918 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.574 4.574 8 H 0.059 0.941 9 C 0.247 3.753 10 H 0.068 0.932 11 O -0.557 6.557 12 C -0.128 4.128 13 S -0.084 6.084 14 C -0.080 4.080 15 C -0.077 4.077 16 C -0.122 4.122 17 C 0.085 3.915 18 F -0.132 7.132 19 C -0.049 4.049 20 Cl -0.053 7.053 21 C -0.105 4.105 22 H 0.264 0.736 23 H 0.348 0.652 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.143 0.857 27 H 0.146 0.854 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.389 -14.726 -0.249 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.613 4.613 8 H 0.078 0.922 9 C 0.187 3.813 10 H 0.085 0.915 11 O -0.359 6.359 12 C -0.276 4.276 13 S 0.166 5.834 14 C -0.195 4.195 15 C -0.102 4.102 16 C -0.143 4.143 17 C 0.061 3.939 18 F -0.110 7.110 19 C -0.079 4.079 20 Cl -0.024 7.024 21 C -0.131 4.131 22 H 0.074 0.926 23 H 0.192 0.808 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.161 0.839 27 H 0.164 0.836 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.622 -14.679 0.219 15.720 hybrid contribution 2.798 1.037 -0.339 3.003 sum 8.420 -13.642 -0.120 16.031 Atomic orbital electron populations 1.70071 1.05978 1.26893 1.45984 1.25031 0.94773 0.99272 0.93492 0.86576 0.79902 0.83004 0.78364 1.20361 1.20938 1.19712 1.21483 0.93216 0.90535 1.56079 0.92250 1.19185 0.87413 0.87571 0.87103 0.91484 1.86611 1.38035 1.96019 1.15250 1.25073 1.03664 0.94140 1.04744 1.86029 1.09403 0.98572 1.89418 1.22254 0.96989 0.98542 1.01677 1.20750 0.99849 0.90208 0.99383 1.21017 0.89853 1.01142 1.02249 1.17303 0.85710 0.84432 1.06437 1.91513 1.60589 1.64877 1.94038 1.20867 0.87015 0.92407 1.07581 1.98386 1.15936 1.91166 1.96875 1.21121 0.90254 1.00020 1.01694 0.92649 0.80791 0.89583 0.90128 0.83887 0.83611 0.83587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.20 12.84 55.43 0.71 -23.49 15 2 C 0.08 2.18 5.40 -17.82 -0.10 2.08 15 3 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 15 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 7 C -0.57 -14.74 8.76 -34.44 -0.30 -15.05 15 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 15 9 C 0.25 5.81 2.87 -27.89 -0.08 5.73 15 10 H 0.07 1.76 8.14 -51.93 -0.42 1.34 15 11 O -0.56 -13.45 12.33 -35.23 -0.43 -13.88 15 12 C -0.13 -2.37 3.97 37.16 0.15 -2.22 15 13 S -0.08 -1.39 21.56 -107.50 -2.32 -3.71 15 14 C -0.08 -1.14 6.11 -39.06 -0.24 -1.38 15 15 C -0.08 -0.91 9.79 -39.37 -0.39 -1.29 15 16 C -0.12 -1.31 10.02 -39.54 -0.40 -1.70 15 17 C 0.08 1.06 7.27 -39.37 -0.29 0.78 15 18 F -0.13 -1.67 16.83 2.25 0.04 -1.63 15 19 C -0.05 -0.66 6.32 -39.47 -0.25 -0.91 15 20 Cl -0.05 -0.68 28.61 -51.86 -1.48 -2.16 15 21 C -0.11 -1.48 9.14 -39.34 -0.36 -1.84 15 22 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 23 H 0.35 7.42 9.04 45.56 0.41 7.83 15 24 H 0.09 1.53 7.74 -51.92 -0.40 1.13 15 25 H 0.08 1.42 7.76 -51.92 -0.40 1.01 15 26 H 0.14 1.41 8.06 -52.49 -0.42 0.99 15 27 H 0.15 1.14 8.06 -52.49 -0.42 0.72 15 28 H 0.15 2.06 5.88 -52.49 -0.31 1.76 15 LS Contribution 283.40 15.07 4.27 4.27 Total: -1.00 -28.10 283.40 -7.99 -36.09 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -1.51 Total: 5.05 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -2.25 Total: -15.80 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.71 Total: -23.49 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.43 Total: -13.88 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.32 Total: -3.71 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.48 Total: -2.16 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.10 -7.99 -36.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436477557.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.610 kcal (2) G-P(sol) polarization free energy of solvation -28.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds