Wall clock time and date at job start Mon Mar 30 2020 01:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99756 * 2 1 4 4 H 1.48503 * 109.47289 * 269.99498 * 3 2 1 5 5 H 1.48506 * 109.47493 * 30.00091 * 3 2 1 6 6 H 1.48508 * 109.47166 * 150.00026 * 3 2 1 7 7 C 1.37880 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99656 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00188 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47260 * 300.00036 * 9 7 2 11 11 O 1.42900 * 109.47360 * 59.99715 * 9 7 2 12 12 C 1.53002 * 109.47081 * 180.02562 * 9 7 2 13 13 S 1.81402 * 109.46996 * 180.02562 * 12 9 7 14 14 C 1.76203 * 102.99970 * 179.97438 * 13 12 9 15 15 C 1.38956 * 120.05007 * 179.97438 * 14 13 12 16 16 C 1.38102 * 119.96947 * 179.72169 * 15 14 13 17 17 C 1.38473 * 120.06263 * 0.25636 * 16 15 14 18 18 F 1.35100 * 119.94763 * 179.97438 * 17 16 15 19 19 C 1.38569 * 120.10105 * 0.02562 * 17 16 15 20 20 Cl 1.73602 * 119.98339 * 179.97438 * 19 17 16 21 21 C 1.38216 * 120.03309 * 359.97438 * 19 17 16 22 22 H 0.96994 * 119.99921 * 359.97438 * 1 2 3 23 23 H 0.96703 * 113.99429 * 60.00262 * 11 9 7 24 24 H 1.08999 * 109.47466 * 60.00003 * 12 9 7 25 25 H 1.09003 * 109.46691 * 299.99326 * 12 9 7 26 26 H 1.08002 * 120.01913 * 0.02562 * 15 14 13 27 27 H 1.07996 * 119.96767 * 180.23239 * 16 15 14 28 28 H 1.07994 * 120.03614 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4300 -2.5751 -1.1665 12 6 2.2454 -3.6620 0.0018 13 16 1.3384 -5.2330 0.0011 14 6 2.6271 -6.4347 0.0019 15 6 2.3157 -7.7889 0.0021 16 6 3.3270 -8.7294 -0.0030 17 6 4.6511 -8.3241 -0.0030 18 9 5.6386 -9.2461 -0.0075 19 6 4.9648 -6.9744 0.0027 20 17 6.6258 -6.4697 0.0033 21 6 3.9559 -6.0297 0.0078 22 1 -0.4850 0.8400 0.0004 23 1 0.9225 -2.5300 -1.9975 24 1 2.8714 -3.6039 0.8922 25 1 2.8727 -3.6047 -0.8878 26 1 1.2832 -8.1060 0.0014 27 1 3.0850 -9.7818 -0.0066 28 1 4.2003 -4.9778 0.0118 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436477557.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:04 Heat of formation + Delta-G solvation = -101.258355 kcal Electronic energy + Delta-G solvation = -16078.552768 eV Core-core repulsion = 12967.162973 eV Total energy + Delta-G solvation = -3111.389795 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.013 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.02067 -40.04096 -37.92150 -37.65683 -34.30014 -32.53424 -31.62288 -31.34511 -27.44049 -24.36385 -24.11104 -22.83478 -19.29951 -19.18938 -18.35456 -17.68680 -16.84623 -16.71561 -16.42360 -16.17506 -15.91645 -15.70196 -14.92762 -14.62759 -14.57874 -14.33605 -13.56955 -13.41086 -13.24992 -12.84857 -12.73097 -12.66390 -12.63365 -12.13152 -11.97847 -11.45014 -11.01982 -10.74134 -10.59858 -10.31607 -10.10132 -8.40794 -8.18096 -6.45087 -0.24408 -0.08983 0.48050 0.83538 1.41329 1.42338 1.50653 1.52981 2.22898 2.38039 2.98099 3.08903 3.54502 3.92522 3.98421 4.05371 4.14845 4.28507 4.30362 4.53518 4.72015 4.85124 4.92226 5.03417 5.50549 5.51107 5.63649 5.95390 6.64595 7.28211 7.46509 8.86348 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.004385 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.525362 B = 6384.565183 C = 7362.044664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.029 3.971 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.584 4.584 8 H 0.066 0.934 9 C 0.247 3.753 10 H 0.031 0.969 11 O -0.571 6.571 12 C -0.114 4.114 13 S -0.098 6.098 14 C -0.091 4.091 15 C -0.069 4.069 16 C -0.106 4.106 17 C 0.084 3.916 18 F -0.131 7.131 19 C -0.061 4.061 20 Cl -0.052 7.052 21 C -0.112 4.112 22 H 0.263 0.737 23 H 0.359 0.641 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.166 0.834 27 H 0.184 0.816 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.451 -16.173 -0.460 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.174 4.174 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.623 4.623 8 H 0.084 0.916 9 C 0.188 3.812 10 H 0.049 0.951 11 O -0.375 6.375 12 C -0.263 4.263 13 S 0.149 5.851 14 C -0.205 4.205 15 C -0.093 4.093 16 C -0.126 4.126 17 C 0.061 3.939 18 F -0.110 7.110 19 C -0.090 4.090 20 Cl -0.024 7.024 21 C -0.138 4.138 22 H 0.072 0.928 23 H 0.204 0.796 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.183 0.817 27 H 0.201 0.799 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.720 -16.140 0.004 17.483 hybrid contribution 2.505 1.325 -0.274 2.847 sum 9.225 -14.816 -0.270 17.455 Atomic orbital electron populations 1.70204 1.07651 1.27656 1.47770 1.25878 0.95478 1.02879 0.93185 0.85531 0.78706 0.78700 0.78490 1.19776 1.20977 1.18846 1.21908 0.93713 0.91744 1.54971 0.91608 1.18920 0.87383 0.89183 0.85734 0.95071 1.86550 1.38856 1.96195 1.15944 1.24599 1.02288 0.94027 1.05379 1.85941 1.10340 0.98195 1.90581 1.22163 0.95962 0.98723 1.03622 1.21041 1.01357 0.89107 0.97794 1.21364 0.88480 1.02748 1.00056 1.17527 0.86484 0.84051 1.05885 1.91520 1.60779 1.64724 1.93973 1.20939 0.86970 0.92869 1.08227 1.98384 1.15804 1.91262 1.96906 1.21066 0.90510 0.99950 1.02237 0.92762 0.79571 0.89208 0.89235 0.81682 0.79921 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.80 12.84 21.45 0.28 -51.53 15 2 C 0.03 1.57 5.40 84.65 0.46 2.02 15 3 Si 0.96 41.69 29.54 68.60 2.03 43.72 15 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 15 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 15 7 C -0.58 -30.25 8.76 25.60 0.22 -30.03 15 8 H 0.07 3.24 7.74 -2.91 -0.02 3.22 15 9 C 0.25 11.88 2.87 29.85 0.09 11.97 15 10 H 0.03 1.71 8.14 -2.39 -0.02 1.70 15 11 O -0.57 -28.11 12.33 -148.98 -1.84 -29.95 15 12 C -0.11 -4.26 3.97 71.98 0.29 -3.97 15 13 S -0.10 -3.22 21.56 -56.49 -1.22 -4.44 15 14 C -0.09 -2.41 6.11 22.60 0.14 -2.28 15 15 C -0.07 -1.41 9.79 22.41 0.22 -1.19 15 16 C -0.11 -1.87 10.02 22.29 0.22 -1.65 15 17 C 0.08 1.87 7.27 22.40 0.16 2.03 15 18 F -0.13 -2.97 16.83 44.97 0.76 -2.22 15 19 C -0.06 -1.52 6.32 22.34 0.14 -1.38 15 20 Cl -0.05 -1.29 28.61 -2.72 -0.08 -1.36 15 21 C -0.11 -3.01 9.14 22.43 0.21 -2.81 15 22 H 0.26 14.42 8.31 -92.71 -0.77 13.65 15 23 H 0.36 15.49 9.04 -74.05 -0.67 14.82 15 24 H 0.09 3.21 7.74 -2.39 -0.02 3.19 15 25 H 0.09 3.12 7.76 -2.39 -0.02 3.10 15 26 H 0.17 2.64 8.06 -2.91 -0.02 2.62 15 27 H 0.18 1.90 8.06 -2.91 -0.02 1.88 15 28 H 0.14 3.86 5.88 -2.91 -0.02 3.84 15 Total: -1.00 -60.25 283.40 2.61 -57.64 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.54 Total: 15.41 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 2.14 Total: -27.28 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.28 Total: -51.53 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.84 Total: -29.95 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.76 Total: -2.22 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -1.22 Total: -4.44 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.36 kcal Total: -60.25 2.61 -57.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436477557.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.615 kcal (2) G-P(sol) polarization free energy of solvation -60.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds