Wall clock time and date at job start Mon Mar 30 2020 01:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48501 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47264 * 300.00448 * 3 2 1 6 6 H 1.48500 * 109.46969 * 60.00053 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 11 11 O 1.42895 * 109.47147 * 60.00370 * 9 7 2 12 12 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 13 13 S 1.81399 * 109.47162 * 180.02562 * 12 9 7 14 14 C 1.76205 * 102.99651 * 179.97438 * 13 12 9 15 15 C 1.38878 * 120.08119 * 359.72400 * 14 13 12 16 16 C 1.38236 * 119.92664 * 179.72508 * 15 14 13 17 17 Cl 1.73610 * 119.95238 * 180.30059 * 16 15 14 18 18 C 1.38395 * 120.09661 * 0.54826 * 16 15 14 19 19 C 1.38298 * 120.15464 * 359.72653 * 18 16 15 20 20 C 1.38256 * 120.06934 * 0.02562 * 19 18 16 21 21 F 1.35095 * 120.04699 * 179.97438 * 20 19 18 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 0.96695 * 114.00385 * 59.99326 * 11 9 7 24 24 H 1.09004 * 109.46930 * 299.99901 * 12 9 7 25 25 H 1.09004 * 109.47059 * 59.99503 * 12 9 7 26 26 H 1.07999 * 120.03640 * 359.97438 * 15 14 13 27 27 H 1.07991 * 119.92413 * 179.70268 * 18 16 15 28 28 H 1.08000 * 119.97014 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 8 0.4291 -2.5746 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 16 1.3382 -5.2331 -0.0013 14 6 2.6270 -6.4347 -0.0020 15 6 3.9556 -6.0305 -0.0076 16 6 4.9641 -6.9759 -0.0024 17 17 6.6253 -6.4713 -0.0015 18 6 4.6516 -8.3241 -0.0030 19 6 3.3297 -8.7308 -0.0031 20 6 2.3158 -7.7909 -0.0032 21 9 1.0247 -8.1887 -0.0038 22 1 -0.4849 0.8400 0.0004 23 1 0.9209 -2.5290 -1.9983 24 1 2.8719 -3.6043 -0.8906 25 1 2.8720 -3.6043 0.8894 26 1 4.2007 -4.9787 -0.0120 27 1 5.4417 -9.0603 -0.0038 28 1 3.0892 -9.7836 -0.0040 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450958119.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:58 Heat of formation + Delta-G solvation = -83.769127 kcal Electronic energy + Delta-G solvation = -16183.744520 eV Core-core repulsion = 13073.113114 eV Total energy + Delta-G solvation = -3110.631405 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.013 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.90220 -39.06393 -36.55031 -36.03282 -32.27194 -31.66565 -30.29964 -29.75663 -25.54142 -23.49201 -22.86870 -21.09594 -18.14803 -17.37044 -17.03360 -16.64028 -15.70866 -15.40816 -14.75673 -14.63873 -14.37496 -14.02911 -13.83145 -13.43462 -13.38471 -12.83037 -12.51066 -11.89341 -11.56436 -11.43703 -11.32161 -11.15443 -11.00501 -10.79233 -10.21840 -9.89287 -9.87112 -9.27453 -8.84068 -8.72066 -8.40773 -7.17699 -6.15311 -4.36235 0.79429 0.89137 1.69517 1.93894 2.82991 3.19503 3.21374 3.28342 3.31017 4.08356 4.28318 4.49084 4.79459 5.01742 5.11871 5.26516 5.49388 5.60207 5.75236 5.78244 5.83070 5.93053 6.11169 6.46235 6.48470 7.44944 7.66854 7.93058 8.65096 9.20203 9.40847 10.88697 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.020949 B = 0.004910 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.283231 B = 5701.657818 C = 6945.370310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.081 3.919 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.573 4.573 8 H 0.060 0.940 9 C 0.247 3.753 10 H 0.068 0.932 11 O -0.556 6.556 12 C -0.130 4.130 13 S -0.069 6.069 14 C -0.109 4.109 15 C -0.105 4.105 16 C -0.024 4.024 17 Cl -0.065 7.065 18 C -0.103 4.103 19 C -0.123 4.123 20 C 0.110 3.890 21 F -0.126 7.126 22 H 0.263 0.737 23 H 0.348 0.652 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.146 0.854 27 H 0.141 0.859 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.487 -15.195 -0.266 17.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.612 4.612 8 H 0.078 0.922 9 C 0.187 3.813 10 H 0.085 0.915 11 O -0.359 6.359 12 C -0.278 4.278 13 S 0.181 5.819 14 C -0.224 4.224 15 C -0.131 4.131 16 C -0.053 4.053 17 Cl -0.036 7.036 18 C -0.126 4.126 19 C -0.144 4.144 20 C 0.083 3.917 21 F -0.104 7.104 22 H 0.073 0.927 23 H 0.192 0.808 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.164 0.836 27 H 0.159 0.841 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.622 -15.126 0.199 16.939 hybrid contribution 2.348 1.113 -0.330 2.619 sum 9.970 -14.013 -0.131 17.199 Atomic orbital electron populations 1.70083 1.05983 1.26775 1.46035 1.25037 0.94772 0.99285 0.93509 0.86519 0.80123 0.83334 0.77862 1.19598 1.20703 1.20710 1.21516 0.93242 0.90474 1.55991 0.92171 1.19195 0.87417 0.87544 0.87146 0.91475 1.86613 1.38012 1.96017 1.15237 1.25102 1.03775 0.94185 1.04762 1.86257 1.08454 0.98170 1.89042 1.22300 0.98681 0.96869 1.04561 1.21050 0.89678 1.00523 1.01808 1.20806 0.85533 0.94000 1.04917 1.98378 1.16869 1.91494 1.96891 1.20794 0.96290 0.93921 1.01583 1.20958 0.91288 0.99684 1.02448 1.17139 0.79153 0.90897 1.04509 1.91532 1.34298 1.90952 1.93611 0.92702 0.80794 0.90083 0.89537 0.83621 0.84078 0.83643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.44 12.84 55.43 0.71 -23.72 15 2 C 0.08 2.19 5.40 -17.82 -0.10 2.09 15 3 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 15 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 15 7 C -0.57 -14.88 8.76 -34.44 -0.30 -15.19 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.25 5.94 2.87 -27.88 -0.08 5.86 15 10 H 0.07 1.80 8.14 -51.93 -0.42 1.38 15 11 O -0.56 -13.78 12.32 -35.23 -0.43 -14.21 15 12 C -0.13 -2.49 3.97 37.16 0.15 -2.34 15 13 S -0.07 -1.26 21.17 -107.50 -2.28 -3.54 15 14 C -0.11 -1.69 6.11 -39.01 -0.24 -1.93 15 15 C -0.10 -1.48 9.14 -39.35 -0.36 -1.84 15 16 C -0.02 -0.29 6.32 -39.52 -0.25 -0.54 15 17 Cl -0.07 -0.73 28.95 -51.86 -1.50 -2.23 15 18 C -0.10 -1.06 9.82 -39.50 -0.39 -1.45 15 19 C -0.12 -1.33 10.02 -39.55 -0.40 -1.73 15 20 C 0.11 1.54 7.28 -39.24 -0.29 1.25 15 21 F -0.13 -1.89 16.76 2.25 0.04 -1.86 15 22 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 23 H 0.35 7.60 9.04 45.56 0.41 8.01 15 24 H 0.08 1.46 7.73 -51.92 -0.40 1.06 15 25 H 0.09 1.58 7.76 -51.92 -0.40 1.17 15 26 H 0.15 2.07 5.88 -52.49 -0.31 1.76 15 27 H 0.14 1.06 8.06 -52.49 -0.42 0.64 15 28 H 0.15 1.14 8.06 -52.49 -0.42 0.72 15 LS Contribution 283.32 15.07 4.27 4.27 Total: -1.00 -28.78 283.32 -7.97 -36.75 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -1.51 Total: 4.97 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -2.25 Total: -15.80 kcal Atomic # 7 Polarization: -24.44 SS G_CDS: 0.71 Total: -23.72 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.43 Total: -14.21 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -2.28 Total: -3.54 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.78 -7.97 -36.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450958119.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.022 kcal (2) G-P(sol) polarization free energy of solvation -28.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds