Wall clock time and date at job start Mon Mar 30 2020 01:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47028 * 2 1 4 4 H 1.09001 * 109.47573 * 54.66560 * 3 2 1 5 5 C 1.53009 * 109.47414 * 174.66976 * 3 2 1 6 6 N 1.46899 * 109.46711 * 294.44361 * 5 3 2 7 7 C 1.46895 * 110.99863 * 185.92086 * 6 5 3 8 8 C 1.53010 * 109.47274 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.46751 * 299.99576 * 8 7 6 10 10 C 1.52998 * 109.46848 * 59.99422 * 8 7 6 11 11 C 1.50701 * 109.47074 * 179.97438 * 8 7 6 12 12 H 1.07994 * 120.00112 * 0.02562 * 11 8 7 13 13 C 1.37870 * 119.99666 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00444 * 0.02562 * 13 11 8 15 15 Si 1.86806 * 119.99948 * 180.02562 * 13 11 8 16 16 H 1.48502 * 109.46784 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47046 * 119.99831 * 15 13 11 18 18 H 1.48493 * 109.46986 * 240.00224 * 15 13 11 19 19 C 1.50704 * 109.47007 * 294.66438 * 3 2 1 20 20 C 1.38235 * 120.00098 * 299.72911 * 19 3 2 21 21 C 1.38232 * 119.99759 * 179.78650 * 20 19 3 22 22 C 1.38237 * 120.00167 * 0.44282 * 21 20 19 23 23 C 1.38237 * 120.00093 * 359.80887 * 22 21 20 24 24 C 1.38240 * 119.99841 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47074 * 305.36539 * 1 2 3 26 26 H 1.09002 * 109.46881 * 185.37134 * 1 2 3 27 27 H 1.08994 * 109.47266 * 65.36958 * 1 2 3 28 28 H 1.09003 * 109.47040 * 119.99491 * 2 1 3 29 29 H 1.08994 * 109.47625 * 239.99812 * 2 1 3 30 30 H 1.08996 * 109.46705 * 54.43735 * 5 3 2 31 31 H 1.08995 * 109.46961 * 174.44372 * 5 3 2 32 32 H 1.00902 * 111.00266 * 61.96078 * 6 5 3 33 33 H 1.08999 * 109.47066 * 299.99541 * 7 6 5 34 34 H 1.09000 * 109.47771 * 59.99872 * 7 6 5 35 35 H 1.09005 * 109.47104 * 60.00283 * 9 8 7 36 36 H 1.09000 * 109.46923 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47520 * 299.99871 * 9 8 7 38 38 H 1.08999 * 109.47050 * 60.00559 * 10 8 7 39 39 H 1.09004 * 109.46878 * 180.02562 * 10 8 7 40 40 H 1.08995 * 109.47582 * 299.99996 * 10 8 7 41 41 H 0.97006 * 120.00889 * 179.97438 * 14 13 11 42 42 H 1.07992 * 119.99837 * 359.97438 * 20 19 3 43 43 H 1.08002 * 120.00004 * 180.27529 * 21 20 19 44 44 H 1.08000 * 120.00175 * 179.83350 * 22 21 20 45 45 H 1.08000 * 120.00377 * 180.02562 * 23 22 21 46 46 H 1.07993 * 120.00239 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6008 1.9832 0.8383 5 6 3.5642 1.4447 0.1340 6 7 3.9407 0.9116 1.4501 7 6 5.3883 1.0281 1.6707 8 6 5.7412 0.4645 3.0487 9 6 4.9959 1.2522 4.1279 10 6 5.3317 -1.0080 3.1175 11 6 7.2264 0.5835 3.2748 12 1 7.8556 1.0181 2.5121 13 6 7.7818 0.1386 4.4556 14 7 7.0156 -0.3901 5.3845 15 14 9.6227 0.2867 4.7362 16 1 10.2557 0.9124 3.5475 17 1 9.8748 1.1302 5.9322 18 1 10.2007 -1.0639 4.9521 19 6 1.6484 2.1137 -1.2912 20 6 2.0951 1.6065 -2.4971 21 6 1.7322 2.2196 -3.6817 22 6 0.9302 3.3454 -3.6599 23 6 0.4878 3.8557 -2.4538 24 6 0.8470 3.2399 -1.2694 25 1 -0.3633 0.5948 0.8381 26 1 -0.3633 -1.0232 0.0962 27 1 -0.3633 0.4283 -0.9341 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 3.9985 0.8219 -0.6480 31 1 3.9361 2.4644 0.0351 32 1 3.6348 -0.0443 1.5540 33 1 5.9194 0.4673 0.9015 34 1 5.6800 2.0772 1.6221 35 1 3.9217 1.1657 3.9643 36 1 5.2470 0.8504 5.1096 37 1 5.2876 2.3012 4.0789 38 1 5.8627 -1.5692 2.3486 39 1 5.5827 -1.4095 4.0994 40 1 4.2575 -1.0945 2.9539 41 1 7.4063 -0.7036 6.2153 42 1 2.7250 0.7295 -2.5138 43 1 2.0776 1.8208 -4.6241 44 1 0.6489 3.8260 -4.5853 45 1 -0.1391 4.7349 -2.4368 46 1 0.5017 3.6387 -0.3271 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459736285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:51 Heat of formation + Delta-G solvation = 0.882720 kcal Electronic energy + Delta-G solvation = -21434.644664 eV Core-core repulsion = 18516.042267 eV Total energy + Delta-G solvation = -2918.602396 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.68985 -37.24128 -35.67941 -33.11352 -30.97708 -30.94769 -30.60701 -27.56207 -25.54418 -25.18720 -24.04026 -22.98809 -22.70483 -22.02124 -19.66364 -18.42409 -16.94320 -15.99288 -15.56031 -15.35067 -14.87542 -14.50858 -14.40245 -14.14237 -13.70339 -13.42922 -13.14730 -12.70921 -12.60025 -12.56418 -12.24731 -11.94339 -11.82294 -11.45216 -11.17178 -11.14202 -11.02686 -10.82285 -10.65397 -10.51206 -10.47346 -10.43976 -10.14030 -10.03507 -9.36104 -9.07479 -8.97462 -8.67842 -8.58926 -8.27599 -7.66082 -5.89536 -3.99769 1.32029 1.34707 3.31391 3.39722 3.43425 3.73694 4.44486 4.60063 4.74605 4.91396 4.98912 5.03690 5.12662 5.18226 5.31866 5.35987 5.46433 5.48630 5.61212 5.71849 5.79091 5.93577 5.95901 6.03161 6.12302 6.17254 6.27821 6.31399 6.38362 6.44373 6.45163 6.47326 6.70512 6.74410 6.91686 6.96332 7.10081 7.19233 7.40943 7.49929 7.76457 7.78299 7.85830 8.02009 8.23735 8.37140 8.58338 9.02022 9.65256 11.10985 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.030010 B = 0.003444 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.787497 B = 8128.588866 C = 8524.790990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.048 4.048 4 H 0.087 0.913 5 C 0.068 3.932 6 N -0.686 5.686 7 C 0.075 3.925 8 C 0.068 3.932 9 C -0.119 4.119 10 C -0.132 4.132 11 C -0.506 4.506 12 H 0.052 0.948 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.888 3.112 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.286 1.286 19 C -0.062 4.062 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.116 4.116 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.022 0.978 31 H 0.066 0.934 32 H 0.337 0.663 33 H 0.012 0.988 34 H 0.055 0.945 35 H 0.020 0.980 36 H 0.073 0.927 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.083 0.917 40 H 0.010 0.990 41 H 0.257 0.743 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.465 3.595 -14.361 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.067 4.067 4 H 0.105 0.895 5 C -0.062 4.062 6 N -0.319 5.319 7 C -0.053 4.053 8 C 0.068 3.932 9 C -0.176 4.176 10 C -0.190 4.190 11 C -0.544 4.544 12 H 0.070 0.930 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.716 3.284 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.062 4.062 20 C -0.134 4.134 21 C -0.138 4.138 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.135 4.135 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.157 0.843 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.092 0.908 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.102 0.898 40 H 0.029 0.971 41 H 0.067 0.933 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.579 4.097 -13.840 19.817 hybrid contribution 1.445 -0.562 -0.520 1.636 sum -12.133 3.534 -14.360 19.129 Atomic orbital electron populations 1.21744 0.95899 1.01259 1.01640 1.21597 0.95955 0.95714 1.02177 1.20292 0.96230 0.95948 0.94213 0.89454 1.21914 0.93205 1.00121 0.90972 1.60588 1.17123 1.26204 1.27969 1.22142 0.84389 0.99716 0.99031 1.18096 0.94509 0.91656 0.88962 1.21631 0.96125 0.97625 1.02247 1.21831 0.95218 0.99039 1.02873 1.21161 0.92120 1.39700 1.01462 0.92978 1.24884 0.97488 0.95182 0.96047 1.69842 1.34165 1.41427 1.06950 0.86612 0.86133 0.77597 0.78066 1.19957 1.21112 1.21181 1.19926 0.96255 0.95092 0.94965 1.21036 1.00069 1.00216 0.92046 1.21118 0.98482 0.96241 0.97995 1.21089 0.99054 0.96986 0.97812 1.21119 1.00225 0.99870 0.92638 1.21115 0.98452 0.95680 0.98205 0.92658 0.93062 0.93032 0.91005 0.92305 0.96012 0.91509 0.84349 0.97009 0.92636 0.96098 0.90780 0.96353 0.96271 0.89828 0.97094 0.93272 0.86250 0.86411 0.86527 0.86371 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.64 37.16 0.36 -1.20 16 2 C -0.12 -1.37 5.19 -26.73 -0.14 -1.50 16 3 C -0.05 -0.60 2.24 -91.77 -0.21 -0.81 16 4 H 0.09 1.16 7.88 -51.93 -0.41 0.75 16 5 C 0.07 1.01 4.86 -3.82 -0.02 0.99 16 6 N -0.69 -12.20 5.66 -113.78 -0.64 -12.85 16 7 C 0.08 1.60 4.57 -3.82 -0.02 1.58 16 8 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 9 C -0.12 -2.91 8.09 37.15 0.30 -2.61 16 10 C -0.13 -3.12 7.92 37.16 0.29 -2.83 16 11 C -0.51 -13.74 8.01 -34.44 -0.28 -14.01 16 12 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 13 C 0.06 1.77 5.15 -17.82 -0.09 1.67 16 14 N -0.88 -24.62 9.35 55.43 0.52 -24.10 16 15 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 19 C -0.06 -0.73 3.87 -104.62 -0.41 -1.13 16 20 C -0.12 -1.30 8.70 -39.58 -0.34 -1.65 16 21 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 22 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 23 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.29 9.67 -39.58 -0.38 -1.67 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.54 7.57 -51.93 -0.39 0.15 16 28 H 0.07 0.91 6.60 -51.93 -0.34 0.56 16 29 H 0.06 0.66 7.23 -51.93 -0.38 0.29 16 30 H 0.02 0.32 7.58 -51.93 -0.39 -0.07 16 31 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 32 H 0.34 5.87 5.16 -39.29 -0.20 5.67 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 36 H 0.07 1.99 6.07 -51.93 -0.32 1.67 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 40 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 41 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 42 H 0.12 1.28 7.14 -52.49 -0.37 0.91 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.12 1.21 7.95 -52.49 -0.42 0.79 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -27.68 355.12 -10.05 -37.73 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.04 Total: 4.14 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -2.21 Total: -26.47 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.12 Total: -36.95 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.68 -10.05 -37.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459736285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.609 kcal (2) G-P(sol) polarization free energy of solvation -27.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds