Wall clock time and date at job start Mon Mar 30 2020 01:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47028 * 2 1 4 4 H 1.09001 * 109.47573 * 54.66560 * 3 2 1 5 5 C 1.53009 * 109.47414 * 174.66976 * 3 2 1 6 6 N 1.46899 * 109.46711 * 294.44361 * 5 3 2 7 7 C 1.46895 * 110.99863 * 185.92086 * 6 5 3 8 8 C 1.53010 * 109.47274 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.46751 * 299.99576 * 8 7 6 10 10 C 1.52998 * 109.46848 * 59.99422 * 8 7 6 11 11 C 1.50701 * 109.47074 * 179.97438 * 8 7 6 12 12 H 1.07994 * 120.00112 * 0.02562 * 11 8 7 13 13 C 1.37870 * 119.99666 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00444 * 0.02562 * 13 11 8 15 15 Si 1.86806 * 119.99948 * 180.02562 * 13 11 8 16 16 H 1.48502 * 109.46784 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47046 * 119.99831 * 15 13 11 18 18 H 1.48493 * 109.46986 * 240.00224 * 15 13 11 19 19 C 1.50704 * 109.47007 * 294.66438 * 3 2 1 20 20 C 1.38235 * 120.00098 * 299.72911 * 19 3 2 21 21 C 1.38232 * 119.99759 * 179.78650 * 20 19 3 22 22 C 1.38237 * 120.00167 * 0.44282 * 21 20 19 23 23 C 1.38237 * 120.00093 * 359.80887 * 22 21 20 24 24 C 1.38240 * 119.99841 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47074 * 305.36539 * 1 2 3 26 26 H 1.09002 * 109.46881 * 185.37134 * 1 2 3 27 27 H 1.08994 * 109.47266 * 65.36958 * 1 2 3 28 28 H 1.09003 * 109.47040 * 119.99491 * 2 1 3 29 29 H 1.08994 * 109.47625 * 239.99812 * 2 1 3 30 30 H 1.08996 * 109.46705 * 54.43735 * 5 3 2 31 31 H 1.08995 * 109.46961 * 174.44372 * 5 3 2 32 32 H 1.00902 * 111.00266 * 61.96078 * 6 5 3 33 33 H 1.08999 * 109.47066 * 299.99541 * 7 6 5 34 34 H 1.09000 * 109.47771 * 59.99872 * 7 6 5 35 35 H 1.09005 * 109.47104 * 60.00283 * 9 8 7 36 36 H 1.09000 * 109.46923 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47520 * 299.99871 * 9 8 7 38 38 H 1.08999 * 109.47050 * 60.00559 * 10 8 7 39 39 H 1.09004 * 109.46878 * 180.02562 * 10 8 7 40 40 H 1.08995 * 109.47582 * 299.99996 * 10 8 7 41 41 H 0.97006 * 120.00889 * 179.97438 * 14 13 11 42 42 H 1.07992 * 119.99837 * 359.97438 * 20 19 3 43 43 H 1.08002 * 120.00004 * 180.27529 * 21 20 19 44 44 H 1.08000 * 120.00175 * 179.83350 * 22 21 20 45 45 H 1.08000 * 120.00377 * 180.02562 * 23 22 21 46 46 H 1.07993 * 120.00239 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6008 1.9832 0.8383 5 6 3.5642 1.4447 0.1340 6 7 3.9407 0.9116 1.4501 7 6 5.3883 1.0281 1.6707 8 6 5.7412 0.4645 3.0487 9 6 4.9959 1.2522 4.1279 10 6 5.3317 -1.0080 3.1175 11 6 7.2264 0.5835 3.2748 12 1 7.8556 1.0181 2.5121 13 6 7.7818 0.1386 4.4556 14 7 7.0156 -0.3901 5.3845 15 14 9.6227 0.2867 4.7362 16 1 10.2557 0.9124 3.5475 17 1 9.8748 1.1302 5.9322 18 1 10.2007 -1.0639 4.9521 19 6 1.6484 2.1137 -1.2912 20 6 2.0951 1.6065 -2.4971 21 6 1.7322 2.2196 -3.6817 22 6 0.9302 3.3454 -3.6599 23 6 0.4878 3.8557 -2.4538 24 6 0.8470 3.2399 -1.2694 25 1 -0.3633 0.5948 0.8381 26 1 -0.3633 -1.0232 0.0962 27 1 -0.3633 0.4283 -0.9341 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 3.9985 0.8219 -0.6480 31 1 3.9361 2.4644 0.0351 32 1 3.6348 -0.0443 1.5540 33 1 5.9194 0.4673 0.9015 34 1 5.6800 2.0772 1.6221 35 1 3.9217 1.1657 3.9643 36 1 5.2470 0.8504 5.1096 37 1 5.2876 2.3012 4.0789 38 1 5.8627 -1.5692 2.3486 39 1 5.5827 -1.4095 4.0994 40 1 4.2575 -1.0945 2.9539 41 1 7.4063 -0.7036 6.2153 42 1 2.7250 0.7295 -2.5138 43 1 2.0776 1.8208 -4.6241 44 1 0.6489 3.8260 -4.5853 45 1 -0.1391 4.7349 -2.4368 46 1 0.5017 3.6387 -0.3271 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459736285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:51 Heat of formation + Delta-G solvation = -11.410178 kcal Electronic energy + Delta-G solvation = -21435.177724 eV Core-core repulsion = 18516.042267 eV Total energy + Delta-G solvation = -2919.135456 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.55825 -38.75007 -37.01579 -34.69158 -32.63445 -31.75515 -31.57827 -28.75643 -27.50179 -27.24157 -25.54292 -23.93785 -23.74216 -22.96424 -20.62409 -20.31434 -17.91886 -17.75696 -17.05809 -16.48544 -16.26083 -15.71887 -15.51860 -15.31621 -14.90724 -14.66467 -14.28998 -14.16180 -14.08927 -13.57000 -13.51503 -13.37652 -13.12355 -12.91861 -12.83789 -12.51303 -12.47030 -12.32519 -12.12281 -12.06334 -11.96739 -11.75617 -11.47484 -11.42398 -11.28044 -10.89243 -10.58959 -10.34537 -9.76189 -9.52672 -9.15066 -7.96701 -6.13616 0.51741 0.55965 1.40871 1.44148 1.53623 2.46446 2.93011 3.25278 3.40746 3.83464 3.94941 4.13639 4.19824 4.21875 4.33573 4.38962 4.52589 4.54459 4.63448 4.66904 4.71729 4.75774 4.85179 4.88590 5.00148 5.04498 5.10210 5.13020 5.18892 5.22512 5.26788 5.29748 5.36099 5.43178 5.44676 5.54364 5.65431 5.68021 5.70394 5.77824 5.83597 6.17685 6.18911 6.26250 6.34768 6.50400 6.66672 6.96046 7.54027 9.01605 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.030010 B = 0.003444 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.787497 B = 8128.588866 C = 8524.790990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.037 4.037 4 H 0.079 0.921 5 C 0.072 3.928 6 N -0.686 5.686 7 C 0.090 3.910 8 C 0.060 3.940 9 C -0.105 4.105 10 C -0.120 4.120 11 C -0.527 4.527 12 H 0.043 0.957 13 C 0.022 3.978 14 N -0.903 5.903 15 Si 0.944 3.056 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.075 4.075 20 C -0.129 4.129 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.125 4.125 24 C -0.129 4.129 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.027 0.973 31 H 0.057 0.943 32 H 0.340 0.660 33 H 0.007 0.993 34 H 0.045 0.955 35 H 0.035 0.965 36 H 0.049 0.951 37 H 0.008 0.992 38 H 0.016 0.984 39 H 0.056 0.944 40 H 0.034 0.966 41 H 0.257 0.743 42 H 0.120 0.880 43 H 0.136 0.864 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.284 3.952 -15.847 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.056 4.056 4 H 0.097 0.903 5 C -0.057 4.057 6 N -0.319 5.319 7 C -0.039 4.039 8 C 0.059 3.941 9 C -0.163 4.163 10 C -0.178 4.178 11 C -0.566 4.566 12 H 0.061 0.939 13 C -0.177 4.177 14 N -0.542 5.542 15 Si 0.771 3.229 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.075 4.075 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.151 4.151 23 C -0.143 4.143 24 C -0.147 4.147 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.160 0.840 33 H 0.025 0.975 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.028 0.972 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.138 0.862 43 H 0.154 0.846 44 H 0.158 0.842 45 H 0.157 0.843 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.409 4.454 -15.335 21.509 hybrid contribution 1.661 -0.641 -0.105 1.783 sum -12.748 3.813 -15.440 20.383 Atomic orbital electron populations 1.21683 0.94845 1.01811 1.01617 1.21573 0.96863 0.94969 1.01848 1.20129 0.94139 0.96629 0.94681 0.90288 1.21922 0.95061 0.99310 0.89456 1.60509 1.14765 1.26529 1.30052 1.21810 0.86440 0.98634 0.97059 1.18145 0.93216 0.92195 0.90549 1.21464 0.96996 0.96803 1.01016 1.21660 0.96702 0.98343 1.01134 1.21472 0.93739 1.39869 1.01498 0.93854 1.25529 1.01155 0.95035 0.95943 1.69967 1.35478 1.41683 1.07099 0.85722 0.81771 0.77560 0.77828 1.19736 1.20891 1.20779 1.19859 0.97337 0.95753 0.94561 1.21150 1.00494 1.00599 0.92424 1.21400 0.98311 0.96352 0.98369 1.21437 0.98282 0.96668 0.98750 1.21418 1.00139 1.00370 0.92332 1.21285 0.98672 0.95678 0.99093 0.92741 0.92196 0.92979 0.91986 0.91896 0.95526 0.92458 0.83958 0.97471 0.93635 0.94611 0.93260 0.97239 0.96464 0.92501 0.94704 0.93303 0.86217 0.84570 0.84157 0.84305 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.64 71.98 0.69 -2.09 16 2 C -0.11 -2.55 5.19 30.59 0.16 -2.40 16 3 C -0.04 -0.90 2.24 -11.54 -0.03 -0.92 16 4 H 0.08 2.04 7.88 -2.39 -0.02 2.03 16 5 C 0.07 2.10 4.86 86.31 0.42 2.51 16 6 N -0.69 -23.91 5.66 -513.88 -2.91 -26.81 16 7 C 0.09 3.78 4.57 86.31 0.39 4.17 16 8 C 0.06 2.90 0.57 -52.93 -0.03 2.87 16 9 C -0.10 -5.17 8.09 71.98 0.58 -4.59 16 10 C -0.12 -5.68 7.92 71.98 0.57 -5.11 16 11 C -0.53 -28.83 8.01 25.60 0.21 -28.63 16 12 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 13 C 0.02 1.22 5.15 84.65 0.44 1.66 16 14 N -0.90 -50.68 9.35 21.44 0.20 -50.48 16 15 Si 0.94 43.68 29.54 68.60 2.03 45.71 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 C -0.07 -1.67 3.87 -19.86 -0.08 -1.75 16 20 C -0.13 -2.72 8.70 22.27 0.19 -2.53 16 21 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 22 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 23 C -0.12 -2.21 10.05 22.27 0.22 -1.98 16 24 C -0.13 -2.68 9.67 22.27 0.22 -2.46 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 1.01 7.57 -2.39 -0.02 0.99 16 28 H 0.06 1.49 6.60 -2.39 -0.02 1.48 16 29 H 0.06 1.34 7.23 -2.39 -0.02 1.32 16 30 H 0.03 0.76 7.58 -2.39 -0.02 0.74 16 31 H 0.06 1.78 8.12 -2.39 -0.02 1.76 16 32 H 0.34 11.49 5.16 -89.69 -0.46 11.03 16 33 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.03 1.60 7.60 -2.38 -0.02 1.58 16 36 H 0.05 2.67 6.07 -2.39 -0.01 2.65 16 37 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 3.00 6.07 -2.38 -0.01 2.98 16 40 H 0.03 1.43 6.57 -2.39 -0.02 1.41 16 41 H 0.26 13.85 8.31 -92.70 -0.77 13.08 16 42 H 0.12 2.44 7.14 -2.91 -0.02 2.42 16 43 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 45 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 46 H 0.13 2.38 7.95 -2.91 -0.02 2.36 16 Total: -1.00 -58.18 355.12 4.19 -53.99 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.46 Total: 22.94 kcal Atomic # 6 Polarization: -49.74 SS G_CDS: 4.41 Total: -45.34 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -2.71 Total: -77.29 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -58.18 4.19 -53.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459736285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.576 kcal (2) G-P(sol) polarization free energy of solvation -58.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds