Wall clock time and date at job start Mon Mar 30 2020 01:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.53002 * 109.46817 * 184.99998 * 3 2 1 6 6 N 1.46896 * 109.47181 * 65.00049 * 5 3 2 7 7 C 1.46904 * 111.00016 * 179.97438 * 6 5 3 8 8 C 1.53001 * 109.47256 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47223 * 300.00243 * 8 7 6 10 10 C 1.53002 * 109.46762 * 60.00300 * 8 7 6 11 11 C 1.50699 * 109.47044 * 179.97438 * 8 7 6 12 12 H 1.07997 * 120.00171 * 0.02562 * 11 8 7 13 13 C 1.37876 * 119.99971 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99917 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 119.99986 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47098 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46917 * 120.00152 * 15 13 11 18 18 H 1.48503 * 109.47059 * 240.00145 * 15 13 11 19 19 C 1.50701 * 109.47212 * 64.99766 * 3 2 1 20 20 C 1.38236 * 119.99963 * 59.72884 * 19 3 2 21 21 C 1.38236 * 120.00036 * 179.81111 * 20 19 3 22 22 C 1.38226 * 119.99834 * 0.39071 * 21 20 19 23 23 C 1.38237 * 120.00085 * 359.86461 * 22 21 20 24 24 C 1.38229 * 120.00216 * 240.00128 * 19 3 2 25 25 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 26 26 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 27 27 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 29 29 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 30 30 H 1.09008 * 109.46873 * 184.99985 * 5 3 2 31 31 H 1.08997 * 109.47047 * 304.99674 * 5 3 2 32 32 H 1.00903 * 111.00011 * 303.95191 * 6 5 3 33 33 H 1.08998 * 109.47006 * 300.00352 * 7 6 5 34 34 H 1.09003 * 109.46947 * 60.00060 * 7 6 5 35 35 H 1.09008 * 109.46914 * 59.99776 * 9 8 7 36 36 H 1.08990 * 109.47272 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.46789 * 300.00081 * 9 8 7 38 38 H 1.08998 * 109.47080 * 59.99614 * 10 8 7 39 39 H 1.08998 * 109.46640 * 180.02562 * 10 8 7 40 40 H 1.09007 * 109.47127 * 299.99547 * 10 8 7 41 41 H 0.96998 * 120.00122 * 180.02562 * 14 13 11 42 42 H 1.08010 * 119.99941 * 359.97438 * 20 19 3 43 43 H 1.08001 * 119.99466 * 180.23187 * 21 20 19 44 44 H 1.08005 * 120.00406 * 179.83264 * 22 21 20 45 45 H 1.07998 * 120.00065 * 179.97438 * 23 22 21 46 46 H 1.08002 * 120.00084 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 3.9490 0.8962 -1.4334 7 6 5.4096 0.8828 -1.5901 8 6 5.7702 0.3062 -2.9607 9 6 5.2325 -1.1219 -3.0707 10 6 5.1474 1.1717 -4.0580 11 6 7.2686 0.2932 -3.1217 12 1 7.9004 0.6591 -2.3260 13 6 7.8327 -0.1860 -4.2849 14 7 7.0633 -0.6311 -5.2541 15 14 9.6900 -0.2028 -4.4842 16 1 10.3243 0.3467 -3.2591 17 1 10.1523 -1.5979 -4.6974 18 1 10.0698 0.6288 -5.6545 19 6 1.6414 2.1163 1.2877 20 6 2.0721 1.6049 2.4976 21 6 1.7096 2.2252 3.6785 22 6 0.9098 3.3522 3.6500 23 6 0.4746 3.8605 2.4404 24 6 0.8403 3.2424 1.2593 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.9356 2.4654 -0.0366 31 1 3.9954 0.8310 0.6659 32 1 3.5623 -0.0263 -1.5666 33 1 5.7928 1.9002 -1.5113 34 1 5.8533 0.2659 -0.8086 35 1 4.1487 -1.1120 -2.9544 36 1 5.4890 -1.5325 -4.0472 37 1 5.6762 -1.7384 -2.2889 38 1 5.5305 2.1891 -3.9795 39 1 5.4040 0.7606 -5.0343 40 1 4.0636 1.1815 -3.9417 41 1 7.4602 -0.9686 -6.0723 42 1 2.6941 0.7221 2.5200 43 1 2.0493 1.8277 4.6236 44 1 0.6243 3.8353 4.5728 45 1 -0.1506 4.7408 2.4181 46 1 0.5004 3.6397 0.3142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459736292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:54 Heat of formation + Delta-G solvation = 1.063660 kcal Electronic energy + Delta-G solvation = -21442.196371 eV Core-core repulsion = 18523.601821 eV Total energy + Delta-G solvation = -2918.594550 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.70613 -37.25696 -35.68274 -33.10612 -30.98346 -30.94795 -30.60997 -27.56896 -25.54493 -25.18556 -24.03596 -23.00591 -22.72136 -22.02168 -19.67121 -18.42289 -16.94259 -15.98371 -15.55621 -15.36926 -14.89386 -14.50722 -14.40752 -14.14424 -13.70624 -13.43257 -13.15268 -12.73142 -12.59521 -12.56778 -12.25008 -11.93711 -11.83988 -11.46326 -11.18027 -11.13649 -11.02933 -10.81629 -10.66246 -10.51860 -10.47291 -10.45011 -10.13949 -10.03396 -9.35915 -9.07169 -8.97955 -8.68709 -8.58739 -8.27537 -7.65971 -5.89542 -3.99714 1.31407 1.34219 3.31403 3.39729 3.43466 3.73125 4.44511 4.59548 4.73707 4.91032 4.98140 5.03284 5.11920 5.16329 5.31116 5.35993 5.45722 5.47929 5.60769 5.70913 5.78054 5.92587 5.95483 6.02548 6.11446 6.17582 6.26268 6.30751 6.38421 6.44030 6.44477 6.47083 6.69571 6.74340 6.91626 6.95703 7.10097 7.19188 7.41015 7.49977 7.76503 7.78359 7.85948 8.02348 8.23762 8.37224 8.58387 9.02067 9.65267 11.11024 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.030345 B = 0.003439 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.506912 B = 8140.552738 C = 8519.319994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.049 4.049 4 H 0.087 0.913 5 C 0.068 3.932 6 N -0.687 5.687 7 C 0.075 3.925 8 C 0.068 3.932 9 C -0.132 4.132 10 C -0.119 4.119 11 C -0.506 4.506 12 H 0.052 0.948 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.888 3.112 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.285 1.285 19 C -0.062 4.062 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.117 4.117 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.022 0.978 32 H 0.337 0.663 33 H 0.055 0.945 34 H 0.012 0.988 35 H 0.010 0.990 36 H 0.083 0.917 37 H 0.018 0.982 38 H 0.017 0.983 39 H 0.074 0.926 40 H 0.020 0.980 41 H 0.257 0.743 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.706 4.233 14.025 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.068 4.068 4 H 0.105 0.895 5 C -0.062 4.062 6 N -0.320 5.320 7 C -0.053 4.053 8 C 0.068 3.932 9 C -0.190 4.190 10 C -0.176 4.176 11 C -0.544 4.544 12 H 0.070 0.930 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.716 3.284 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.062 4.062 20 C -0.133 4.133 21 C -0.138 4.138 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.135 4.135 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.157 0.843 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.029 0.971 36 H 0.102 0.898 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.092 0.908 40 H 0.039 0.961 41 H 0.067 0.933 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.753 4.749 13.509 19.854 hybrid contribution 1.365 -0.696 0.568 1.635 sum -12.387 4.053 14.077 19.184 Atomic orbital electron populations 1.21749 0.95846 1.01261 1.01731 1.21610 0.96013 0.95705 1.02212 1.20291 0.96202 0.95947 0.94367 0.89460 1.21926 0.93059 1.00125 0.91089 1.60627 1.13010 1.29568 1.28746 1.22142 0.84446 0.99510 0.99183 1.18095 0.94487 0.91603 0.89044 1.21830 0.95149 0.99094 1.02881 1.21635 0.96241 0.97543 1.02223 1.21162 0.91124 1.41049 1.01104 0.92976 1.24886 0.97546 0.95277 0.95906 1.69844 1.33911 1.42567 1.06061 0.86609 0.86282 0.77518 0.77981 1.19958 1.21186 1.21107 1.19904 0.96308 0.95097 0.94910 1.21042 1.00120 1.00141 0.92037 1.21118 0.98472 0.96194 0.98035 1.21089 0.99038 0.97008 0.97786 1.21116 1.00246 0.99861 0.92632 1.21110 0.98386 0.95717 0.98244 0.92929 0.92664 0.93047 0.91029 0.92244 0.91508 0.95998 0.84324 0.92635 0.97001 0.97104 0.89828 0.96267 0.96345 0.90768 0.96109 0.93273 0.86236 0.86395 0.86517 0.86364 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.73 37.16 0.36 -1.19 16 2 C -0.12 -1.38 5.17 -26.73 -0.14 -1.52 16 3 C -0.05 -0.62 2.25 -91.77 -0.21 -0.82 16 4 H 0.09 1.15 7.88 -51.93 -0.41 0.74 16 5 C 0.07 1.01 4.89 -3.83 -0.02 1.00 16 6 N -0.69 -12.26 5.71 -113.78 -0.65 -12.91 16 7 C 0.08 1.60 4.59 -3.82 -0.02 1.58 16 8 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 9 C -0.13 -3.12 7.92 37.16 0.29 -2.83 16 10 C -0.12 -2.92 8.09 37.16 0.30 -2.62 16 11 C -0.51 -13.74 8.01 -34.44 -0.28 -14.02 16 12 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 13 C 0.06 1.76 5.15 -17.82 -0.09 1.67 16 14 N -0.88 -24.63 9.35 55.43 0.52 -24.11 16 15 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C -0.06 -0.72 3.76 -104.63 -0.39 -1.12 16 20 C -0.12 -1.30 8.71 -39.58 -0.34 -1.65 16 21 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 22 C -0.13 -1.26 10.05 -39.59 -0.40 -1.66 16 23 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.12 -1.28 9.67 -39.59 -0.38 -1.66 16 25 H 0.05 0.55 7.38 -51.93 -0.38 0.17 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.90 6.47 -51.93 -0.34 0.57 16 29 H 0.06 0.67 7.21 -51.93 -0.37 0.30 16 30 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 31 H 0.02 0.33 7.59 -51.93 -0.39 -0.07 16 32 H 0.34 5.88 4.93 -39.29 -0.19 5.69 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.01 0.22 6.57 -51.92 -0.34 -0.13 16 36 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 40 H 0.02 0.46 7.60 -51.92 -0.39 0.07 16 41 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.12 1.29 7.13 -52.48 -0.37 0.91 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 44 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.12 1.20 7.95 -52.49 -0.42 0.78 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -27.72 354.63 -10.02 -37.74 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -8.02 Total: 4.18 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -2.19 Total: -26.46 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.13 Total: -37.02 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.72 -10.02 -37.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459736292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.803 kcal (2) G-P(sol) polarization free energy of solvation -27.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds