Wall clock time and date at job start Mon Mar 30 2020 01:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.53002 * 109.46817 * 184.99998 * 3 2 1 6 6 N 1.46896 * 109.47181 * 65.00049 * 5 3 2 7 7 C 1.46904 * 111.00016 * 179.97438 * 6 5 3 8 8 C 1.53001 * 109.47256 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47223 * 300.00243 * 8 7 6 10 10 C 1.53002 * 109.46762 * 60.00300 * 8 7 6 11 11 C 1.50699 * 109.47044 * 179.97438 * 8 7 6 12 12 H 1.07997 * 120.00171 * 0.02562 * 11 8 7 13 13 C 1.37876 * 119.99971 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99917 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 119.99986 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47098 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46917 * 120.00152 * 15 13 11 18 18 H 1.48503 * 109.47059 * 240.00145 * 15 13 11 19 19 C 1.50701 * 109.47212 * 64.99766 * 3 2 1 20 20 C 1.38236 * 119.99963 * 59.72884 * 19 3 2 21 21 C 1.38236 * 120.00036 * 179.81111 * 20 19 3 22 22 C 1.38226 * 119.99834 * 0.39071 * 21 20 19 23 23 C 1.38237 * 120.00085 * 359.86461 * 22 21 20 24 24 C 1.38229 * 120.00216 * 240.00128 * 19 3 2 25 25 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 26 26 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 27 27 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 29 29 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 30 30 H 1.09008 * 109.46873 * 184.99985 * 5 3 2 31 31 H 1.08997 * 109.47047 * 304.99674 * 5 3 2 32 32 H 1.00903 * 111.00011 * 303.95191 * 6 5 3 33 33 H 1.08998 * 109.47006 * 300.00352 * 7 6 5 34 34 H 1.09003 * 109.46947 * 60.00060 * 7 6 5 35 35 H 1.09008 * 109.46914 * 59.99776 * 9 8 7 36 36 H 1.08990 * 109.47272 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.46789 * 300.00081 * 9 8 7 38 38 H 1.08998 * 109.47080 * 59.99614 * 10 8 7 39 39 H 1.08998 * 109.46640 * 180.02562 * 10 8 7 40 40 H 1.09007 * 109.47127 * 299.99547 * 10 8 7 41 41 H 0.96998 * 120.00122 * 180.02562 * 14 13 11 42 42 H 1.08010 * 119.99941 * 359.97438 * 20 19 3 43 43 H 1.08001 * 119.99466 * 180.23187 * 21 20 19 44 44 H 1.08005 * 120.00406 * 179.83264 * 22 21 20 45 45 H 1.07998 * 120.00065 * 179.97438 * 23 22 21 46 46 H 1.08002 * 120.00084 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 3.9490 0.8962 -1.4334 7 6 5.4096 0.8828 -1.5901 8 6 5.7702 0.3062 -2.9607 9 6 5.2325 -1.1219 -3.0707 10 6 5.1474 1.1717 -4.0580 11 6 7.2686 0.2932 -3.1217 12 1 7.9004 0.6591 -2.3260 13 6 7.8327 -0.1860 -4.2849 14 7 7.0633 -0.6311 -5.2541 15 14 9.6900 -0.2028 -4.4842 16 1 10.3243 0.3467 -3.2591 17 1 10.1523 -1.5979 -4.6974 18 1 10.0698 0.6288 -5.6545 19 6 1.6414 2.1163 1.2877 20 6 2.0721 1.6049 2.4976 21 6 1.7096 2.2252 3.6785 22 6 0.9098 3.3522 3.6500 23 6 0.4746 3.8605 2.4404 24 6 0.8403 3.2424 1.2593 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.9356 2.4654 -0.0366 31 1 3.9954 0.8310 0.6659 32 1 3.5623 -0.0263 -1.5666 33 1 5.7928 1.9002 -1.5113 34 1 5.8533 0.2659 -0.8086 35 1 4.1487 -1.1120 -2.9544 36 1 5.4890 -1.5325 -4.0472 37 1 5.6762 -1.7384 -2.2889 38 1 5.5305 2.1891 -3.9795 39 1 5.4040 0.7606 -5.0343 40 1 4.0636 1.1815 -3.9417 41 1 7.4602 -0.9686 -6.0723 42 1 2.6941 0.7221 2.5200 43 1 2.0493 1.8277 4.6236 44 1 0.6243 3.8353 4.5728 45 1 -0.1506 4.7408 2.4181 46 1 0.5004 3.6397 0.3142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459736292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:53 Heat of formation + Delta-G solvation = -11.288282 kcal Electronic energy + Delta-G solvation = -21442.731992 eV Core-core repulsion = 18523.601821 eV Total energy + Delta-G solvation = -2919.130171 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57380 -38.75959 -37.02694 -34.68441 -32.63512 -31.75871 -31.57822 -28.76505 -27.50474 -27.24175 -25.53718 -23.96779 -23.74663 -22.96471 -20.63475 -20.30902 -17.91381 -17.75869 -17.04893 -16.48736 -16.28139 -15.73701 -15.50774 -15.32210 -14.91684 -14.66437 -14.29710 -14.15807 -14.09994 -13.59757 -13.50310 -13.36778 -13.12862 -12.91999 -12.85849 -12.51465 -12.46428 -12.32998 -12.12387 -12.06391 -11.97098 -11.75317 -11.47990 -11.44116 -11.28131 -10.89272 -10.59064 -10.34592 -9.76384 -9.52797 -9.15695 -7.96799 -6.13670 0.51404 0.55801 1.40882 1.44140 1.53665 2.46448 2.92765 3.25199 3.40791 3.82550 3.93342 4.12814 4.19072 4.21581 4.33282 4.38397 4.52190 4.54287 4.63493 4.66168 4.71412 4.75688 4.84072 4.88206 4.99623 5.04102 5.09262 5.12567 5.18660 5.22200 5.26106 5.29322 5.34630 5.42673 5.44256 5.54140 5.65134 5.67889 5.70343 5.77635 5.83060 6.17451 6.18659 6.26040 6.34571 6.50313 6.66640 6.95933 7.53934 9.01568 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.030345 B = 0.003439 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.506912 B = 8140.552738 C = 8519.319994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.038 4.038 4 H 0.080 0.920 5 C 0.072 3.928 6 N -0.686 5.686 7 C 0.090 3.910 8 C 0.059 3.941 9 C -0.120 4.120 10 C -0.105 4.105 11 C -0.527 4.527 12 H 0.043 0.957 13 C 0.022 3.978 14 N -0.903 5.903 15 Si 0.945 3.055 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.283 1.283 19 C -0.074 4.074 20 C -0.129 4.129 21 C -0.127 4.127 22 C -0.133 4.133 23 C -0.125 4.125 24 C -0.129 4.129 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.025 0.975 32 H 0.340 0.660 33 H 0.045 0.955 34 H 0.007 0.993 35 H 0.034 0.966 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.009 0.991 39 H 0.049 0.951 40 H 0.035 0.965 41 H 0.257 0.743 42 H 0.119 0.881 43 H 0.136 0.864 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.577 4.642 15.465 21.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.057 4.057 4 H 0.099 0.901 5 C -0.057 4.057 6 N -0.319 5.319 7 C -0.040 4.040 8 C 0.059 3.941 9 C -0.178 4.178 10 C -0.163 4.163 11 C -0.566 4.566 12 H 0.062 0.938 13 C -0.177 4.177 14 N -0.542 5.542 15 Si 0.771 3.229 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.209 1.209 19 C -0.075 4.075 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.151 4.151 23 C -0.142 4.142 24 C -0.147 4.147 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.161 0.839 33 H 0.064 0.936 34 H 0.025 0.975 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.028 0.972 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.137 0.863 43 H 0.154 0.846 44 H 0.159 0.841 45 H 0.157 0.843 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.634 5.159 14.957 21.552 hybrid contribution 1.597 -0.788 0.165 1.789 sum -13.037 4.370 15.122 20.439 Atomic orbital electron populations 1.21688 0.94739 1.01831 1.01727 1.21586 0.96966 0.94990 1.01824 1.20130 0.94061 0.96614 0.94884 0.90149 1.21930 0.94977 0.99281 0.89547 1.60544 1.10733 1.29853 1.30818 1.21812 0.86534 0.98420 0.97188 1.18145 0.93238 0.92126 0.90604 1.21659 0.96627 0.98397 1.01147 1.21469 0.97059 0.96765 1.01010 1.21472 0.92765 1.41260 1.01083 0.93849 1.25532 1.01290 0.95101 0.95752 1.69969 1.35245 1.42775 1.06238 0.85717 0.81824 0.77504 0.77805 1.19733 1.20787 1.20879 1.19836 0.97401 0.95771 0.94486 1.21152 1.00570 1.00509 0.92445 1.21396 0.98322 0.96330 0.98395 1.21437 0.98258 0.96676 0.98738 1.21418 1.00140 1.00362 0.92319 1.21284 0.98557 0.95675 0.99156 0.92907 0.92650 0.92188 0.92023 0.91940 0.92397 0.95664 0.83925 0.93631 0.97461 0.94730 0.92488 0.96451 0.97227 0.93233 0.94635 0.93301 0.86290 0.84597 0.84148 0.84265 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.73 71.98 0.70 -2.07 16 2 C -0.12 -2.59 5.17 30.59 0.16 -2.43 16 3 C -0.04 -0.92 2.25 -11.54 -0.03 -0.95 16 4 H 0.08 2.05 7.88 -2.39 -0.02 2.03 16 5 C 0.07 2.11 4.89 86.30 0.42 2.53 16 6 N -0.69 -24.03 5.71 -513.88 -2.93 -26.97 16 7 C 0.09 3.78 4.59 86.30 0.40 4.18 16 8 C 0.06 2.90 0.57 -52.93 -0.03 2.87 16 9 C -0.12 -5.68 7.92 71.98 0.57 -5.11 16 10 C -0.11 -5.19 8.09 71.98 0.58 -4.61 16 11 C -0.53 -28.85 8.01 25.60 0.21 -28.65 16 12 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 13 C 0.02 1.22 5.15 84.65 0.44 1.65 16 14 N -0.90 -50.69 9.35 21.45 0.20 -50.49 16 15 Si 0.94 43.69 29.54 68.60 2.03 45.72 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 C -0.07 -1.66 3.76 -19.87 -0.07 -1.74 16 20 C -0.13 -2.73 8.71 22.27 0.19 -2.54 16 21 C -0.13 -2.31 10.05 22.27 0.22 -2.08 16 22 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 23 C -0.12 -2.18 10.05 22.27 0.22 -1.96 16 24 C -0.13 -2.64 9.67 22.27 0.22 -2.42 16 25 H 0.05 1.03 7.38 -2.39 -0.02 1.01 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.49 6.47 -2.39 -0.02 1.47 16 29 H 0.06 1.35 7.21 -2.39 -0.02 1.33 16 30 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.03 0.73 7.59 -2.39 -0.02 0.71 16 32 H 0.34 11.53 4.93 -89.69 -0.44 11.09 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.03 1.42 6.57 -2.38 -0.02 1.40 16 36 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.05 2.68 6.07 -2.39 -0.01 2.67 16 40 H 0.03 1.59 7.60 -2.38 -0.02 1.57 16 41 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 42 H 0.12 2.45 7.13 -2.91 -0.02 2.43 16 43 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 45 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 46 H 0.13 2.35 7.95 -2.91 -0.02 2.33 16 Total: -1.00 -58.25 354.63 4.20 -54.05 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.49 Total: 23.02 kcal Atomic # 6 Polarization: -49.75 SS G_CDS: 4.42 Total: -45.33 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -2.73 Total: -77.46 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -58.25 4.20 -54.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459736292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.766 kcal (2) G-P(sol) polarization free energy of solvation -58.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds