Wall clock time and date at job start Mon Mar 30 2020 01:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53006 * 109.46846 * 65.00509 * 4 2 1 6 6 N 1.46902 * 109.46859 * 180.02562 * 5 4 2 7 7 C 1.46903 * 110.99753 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46966 * 179.97438 * 7 6 5 9 9 C 1.52991 * 109.47662 * 300.00175 * 8 7 6 10 10 C 1.53010 * 109.46951 * 60.00413 * 8 7 6 11 11 C 1.50707 * 109.47077 * 179.97438 * 8 7 6 12 12 H 1.08003 * 119.99673 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99873 * 180.02562 * 11 8 7 14 14 N 1.31510 * 120.00063 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99757 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47263 * 59.99564 * 15 13 11 17 17 H 1.48496 * 109.47226 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47001 * 299.99867 * 15 13 11 19 19 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 20 20 C 1.38237 * 119.99747 * 59.72563 * 19 2 1 21 21 C 1.38240 * 119.99788 * 179.81066 * 20 19 2 22 22 C 1.38236 * 119.99657 * 0.39831 * 21 20 19 23 23 C 1.38230 * 120.00403 * 359.85459 * 22 21 20 24 24 C 1.38232 * 120.00112 * 240.00114 * 19 2 1 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 31 31 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 32 32 H 1.00898 * 110.99625 * 303.95078 * 6 5 4 33 33 H 1.08995 * 109.47175 * 299.99647 * 7 6 5 34 34 H 1.09006 * 109.47173 * 59.99887 * 7 6 5 35 35 H 1.09006 * 109.47127 * 59.99735 * 9 8 7 36 36 H 1.08993 * 109.47590 * 179.97438 * 9 8 7 37 37 H 1.09006 * 109.47009 * 299.99928 * 9 8 7 38 38 H 1.08995 * 109.47388 * 59.99164 * 10 8 7 39 39 H 1.08993 * 109.47032 * 179.97438 * 10 8 7 40 40 H 1.09002 * 109.46308 * 299.99649 * 10 8 7 41 41 H 0.97005 * 120.00098 * 179.97438 * 14 13 11 42 42 H 1.08003 * 120.00234 * 0.02562 * 20 19 2 43 43 H 1.07995 * 119.99993 * 180.23158 * 21 20 19 44 44 H 1.08005 * 119.99783 * 179.83592 * 22 21 20 45 45 H 1.08000 * 120.00473 * 179.97438 * 23 22 21 46 46 H 1.08005 * 119.99991 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6354 0.0689 -2.4953 6 7 2.1245 -0.6240 -3.6947 7 6 1.7531 0.1074 -4.9134 8 6 2.2792 -0.6428 -6.1387 9 6 3.8028 -0.7526 -6.0542 10 6 1.6683 -2.0451 -6.1793 11 6 1.8976 0.1071 -7.3890 12 1 1.3364 1.0271 -7.3168 13 6 2.2650 -0.3812 -8.6249 14 7 2.9480 -1.5016 -8.7128 15 14 1.7927 0.5488 -10.1746 16 1 2.3860 1.9096 -10.1356 17 1 2.3032 -0.1794 -11.3639 18 1 0.3137 0.6558 -10.2563 19 6 2.0323 -0.7104 1.2305 20 6 1.6936 -2.0322 1.4521 21 6 2.1576 -2.6850 2.5788 22 6 2.9535 -2.0136 3.4881 23 6 3.2878 -0.6903 3.2691 24 6 2.8270 -0.0386 2.1405 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 0.5490 0.1471 -2.5390 31 1 2.0700 1.0675 -2.4494 32 1 3.1223 -0.7667 -3.6482 33 1 0.6676 0.1859 -4.9735 34 1 2.1886 1.1062 -4.8847 35 1 4.0785 -1.2953 -5.1499 36 1 4.1776 -1.2874 -6.9268 37 1 4.2381 0.2464 -6.0253 38 1 0.5828 -1.9669 -6.2394 39 1 2.0427 -2.5793 -7.0524 40 1 1.9439 -2.5876 -5.2750 41 1 3.2061 -1.8454 -9.5824 42 1 1.0694 -2.5559 0.7432 43 1 1.8961 -3.7187 2.7501 44 1 3.3138 -2.5228 4.3697 45 1 3.9092 -0.1656 3.9797 46 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459736321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:43 Heat of formation + Delta-G solvation = -13.339992 kcal Electronic energy + Delta-G solvation = -20917.160787 eV Core-core repulsion = 17997.941648 eV Total energy + Delta-G solvation = -2919.219139 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.41915 -38.78323 -37.07709 -35.03020 -32.90068 -31.74271 -30.68260 -28.86141 -27.50412 -27.23764 -25.83323 -24.47764 -23.54087 -22.52434 -20.77894 -20.20360 -17.95856 -17.69054 -17.01178 -16.55717 -16.16721 -15.98817 -15.45320 -15.24480 -14.85170 -14.67038 -14.31637 -14.14757 -14.02830 -13.78157 -13.55700 -13.16313 -13.06829 -12.92748 -12.82234 -12.58545 -12.44343 -12.31255 -12.15883 -12.09874 -12.02425 -11.79366 -11.49316 -11.36841 -11.25826 -10.87928 -10.59848 -10.33849 -9.76576 -9.53713 -9.14508 -7.96247 -6.13431 0.51133 0.55421 1.43747 1.44186 1.51302 2.46728 2.92636 3.25572 3.41717 3.77817 3.92120 4.16237 4.20950 4.29842 4.32857 4.43466 4.49707 4.56318 4.63165 4.67581 4.69402 4.74730 4.78085 4.88312 4.99244 5.05161 5.08056 5.15161 5.18526 5.22242 5.23010 5.29107 5.38723 5.40888 5.44289 5.54312 5.64785 5.68160 5.70027 5.77419 5.82250 6.17770 6.19328 6.27913 6.35303 6.50479 6.66430 6.96148 7.54088 9.01804 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.039940 B = 0.002815 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.890435 B = 9945.300671 C =10127.013799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.045 4.045 3 H 0.080 0.920 4 C -0.096 4.096 5 C 0.059 3.941 6 N -0.691 5.691 7 C 0.090 3.910 8 C 0.059 3.941 9 C -0.121 4.121 10 C -0.106 4.106 11 C -0.529 4.529 12 H 0.044 0.956 13 C 0.022 3.978 14 N -0.904 5.904 15 Si 0.945 3.055 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.083 4.083 20 C -0.127 4.127 21 C -0.129 4.129 22 C -0.135 4.135 23 C -0.127 4.127 24 C -0.132 4.132 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.023 0.977 32 H 0.337 0.663 33 H 0.048 0.952 34 H 0.007 0.993 35 H 0.033 0.967 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.010 0.990 39 H 0.048 0.952 40 H 0.034 0.966 41 H 0.258 0.742 42 H 0.123 0.877 43 H 0.135 0.865 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.975 0.968 23.298 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 H 0.098 0.902 4 C -0.134 4.134 5 C -0.070 4.070 6 N -0.322 5.322 7 C -0.039 4.039 8 C 0.059 3.941 9 C -0.179 4.179 10 C -0.164 4.164 11 C -0.567 4.567 12 H 0.063 0.937 13 C -0.177 4.177 14 N -0.543 5.543 15 Si 0.771 3.229 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.201 1.201 19 C -0.083 4.083 20 C -0.145 4.145 21 C -0.147 4.147 22 C -0.153 4.153 23 C -0.145 4.145 24 C -0.150 4.150 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.156 0.844 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.029 0.971 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.141 0.859 43 H 0.153 0.847 44 H 0.157 0.843 45 H 0.157 0.843 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.441 0.427 23.121 23.169 hybrid contribution 0.399 1.175 -1.192 1.721 sum -1.042 1.602 21.929 22.012 Atomic orbital electron populations 1.21864 0.93810 1.02281 1.01965 1.20086 0.96415 0.98906 0.91016 0.90166 1.21492 1.00470 0.99346 0.92046 1.22043 1.00422 0.94902 0.89610 1.60531 1.19645 1.50540 1.01522 1.21805 0.98568 0.93662 0.89857 1.18144 0.92282 0.92870 0.90845 1.21669 0.98310 0.98163 0.99786 1.21475 0.96995 0.98541 0.99351 1.21426 1.34973 1.08144 0.92190 0.93726 1.25547 0.95145 0.95734 1.01297 1.69960 1.39015 1.20997 1.24320 0.85826 0.78496 0.78852 0.79677 1.20081 1.21049 1.20097 1.19994 0.97612 0.94561 0.96109 1.21200 1.00601 0.94596 0.98120 1.21429 0.98024 1.00717 0.94499 1.21445 0.98663 0.95089 1.00086 1.21428 1.00047 0.95295 0.97715 1.21321 0.98298 1.00586 0.94799 0.92120 0.92459 0.92193 0.92568 0.91511 0.91185 0.95847 0.84398 0.93384 0.97484 0.94775 0.92531 0.96485 0.97110 0.93267 0.94732 0.93295 0.85929 0.84679 0.84307 0.84326 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.76 71.98 0.63 -2.01 16 2 C -0.05 -0.89 2.56 -11.54 -0.03 -0.92 16 3 H 0.08 1.51 7.88 -2.39 -0.02 1.49 16 4 C -0.10 -2.25 4.69 30.60 0.14 -2.11 16 5 C 0.06 1.66 5.44 86.30 0.47 2.13 16 6 N -0.69 -24.25 5.71 -513.86 -2.94 -27.18 16 7 C 0.09 3.78 4.59 86.30 0.40 4.18 16 8 C 0.06 2.89 0.57 -52.93 -0.03 2.86 16 9 C -0.12 -5.79 7.92 71.98 0.57 -5.22 16 10 C -0.11 -5.24 8.09 71.99 0.58 -4.66 16 11 C -0.53 -28.91 8.01 25.60 0.21 -28.70 16 12 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 13 C 0.02 1.19 5.15 84.66 0.44 1.63 16 14 N -0.90 -50.96 9.35 21.45 0.20 -50.76 16 15 Si 0.94 43.63 29.54 68.60 2.03 45.66 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 C -0.08 -1.65 4.78 -19.87 -0.09 -1.75 16 20 C -0.13 -2.50 8.76 22.27 0.20 -2.31 16 21 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 22 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 23 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 24 C -0.13 -2.41 9.67 22.27 0.22 -2.20 16 25 H 0.06 1.16 6.57 -2.39 -0.02 1.14 16 26 H 0.06 1.07 7.38 -2.39 -0.02 1.05 16 27 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.66 7.58 -2.39 -0.02 1.64 16 30 H 0.07 1.95 6.57 -2.39 -0.02 1.94 16 31 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.34 11.69 6.77 -89.70 -0.61 11.08 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 35 H 0.03 1.42 6.57 -2.38 -0.02 1.41 16 36 H 0.06 3.01 6.07 -2.39 -0.01 2.99 16 37 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.05 2.68 6.07 -2.39 -0.01 2.66 16 40 H 0.03 1.56 7.60 -2.39 -0.02 1.54 16 41 H 0.26 13.99 8.31 -92.70 -0.77 13.22 16 42 H 0.12 2.31 7.16 -2.91 -0.02 2.29 16 43 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 44 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 45 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 46 H 0.13 1.99 7.95 -2.91 -0.02 1.97 16 Total: -1.00 -58.67 356.44 3.97 -54.70 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.32 Total: 22.42 kcal Atomic # 6 Polarization: -49.19 SS G_CDS: 4.36 Total: -44.83 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -2.73 Total: -77.95 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -58.67 3.97 -54.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459736321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.361 kcal (2) G-P(sol) polarization free energy of solvation -58.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds