Wall clock time and date at job start Mon Mar 30 2020 01:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47162 * 2 1 4 4 H 1.08995 * 109.47074 * 56.05108 * 3 2 1 5 5 C 1.52999 * 109.47127 * 176.05694 * 3 2 1 6 6 C 1.50699 * 109.46998 * 185.00084 * 5 3 2 7 7 C 1.38238 * 120.00159 * 269.72888 * 6 5 3 8 8 C 1.38232 * 120.00032 * 179.76805 * 7 6 5 9 9 C 1.38230 * 119.99952 * 0.50152 * 8 7 6 10 10 C 1.38235 * 120.00362 * 359.74879 * 9 8 7 11 11 C 1.38238 * 119.99826 * 359.97438 * 10 9 8 12 12 N 1.46906 * 109.47008 * 296.05712 * 3 2 1 13 13 C 1.46901 * 110.99739 * 305.54389 * 12 3 2 14 14 C 1.53001 * 109.47041 * 181.50374 * 13 12 3 15 15 C 1.53004 * 109.47196 * 300.00139 * 14 13 12 16 16 C 1.53001 * 109.47181 * 59.99787 * 14 13 12 17 17 C 1.50695 * 109.47273 * 180.02562 * 14 13 12 18 18 H 1.07994 * 119.99916 * 359.97438 * 17 14 13 19 19 C 1.37882 * 119.99997 * 180.02562 * 17 14 13 20 20 N 1.31509 * 119.99972 * 359.97438 * 19 17 14 21 21 Si 1.86795 * 119.99984 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47169 * 89.99545 * 21 19 17 23 23 H 1.48502 * 109.47010 * 209.99987 * 21 19 17 24 24 H 1.48507 * 109.47057 * 329.99850 * 21 19 17 25 25 H 1.09003 * 109.46935 * 56.83040 * 1 2 3 26 26 H 1.08997 * 109.46762 * 176.82862 * 1 2 3 27 27 H 1.08995 * 109.46928 * 296.82431 * 1 2 3 28 28 H 1.09002 * 109.47170 * 239.99900 * 2 1 3 29 29 H 1.08999 * 109.47523 * 120.00253 * 2 1 3 30 30 H 1.09000 * 109.46942 * 304.99932 * 5 3 2 31 31 H 1.08993 * 109.47411 * 65.00117 * 5 3 2 32 32 H 1.07999 * 119.99572 * 359.97438 * 7 6 5 33 33 H 1.08003 * 119.99806 * 180.22843 * 8 7 6 34 34 H 1.08010 * 119.99934 * 179.72908 * 9 8 7 35 35 H 1.07996 * 120.00444 * 179.97438 * 10 9 8 36 36 H 1.07994 * 119.99892 * 179.97438 * 11 10 9 37 37 H 1.00898 * 111.00154 * 69.49562 * 12 3 2 38 38 H 1.08998 * 109.46920 * 61.50749 * 13 12 3 39 39 H 1.09000 * 109.47323 * 301.50249 * 13 12 3 40 40 H 1.08989 * 109.47244 * 179.97438 * 15 14 13 41 41 H 1.08999 * 109.46891 * 300.00202 * 15 14 13 42 42 H 1.09000 * 109.47036 * 59.99987 * 15 14 13 43 43 H 1.09000 * 109.47412 * 300.00234 * 16 14 13 44 44 H 1.09008 * 109.46709 * 60.00085 * 16 14 13 45 45 H 1.08994 * 109.47766 * 179.97438 * 16 14 13 46 46 H 0.96995 * 119.99990 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6201 1.9763 0.8524 5 6 3.5668 1.4437 0.0992 6 6 4.0611 2.8619 0.2229 7 6 4.3706 3.5875 -0.9123 8 6 4.8194 4.8900 -0.7991 9 6 4.9686 5.4635 0.4498 10 6 4.6641 4.7362 1.5852 11 6 4.2099 3.4356 1.4718 12 7 1.6297 2.1070 -1.2443 13 6 2.0672 1.3411 -2.4190 14 6 1.6553 2.0817 -3.6929 15 6 0.1335 2.2371 -3.7232 16 6 2.3095 3.4646 -3.7131 17 6 2.1035 1.2958 -4.8981 18 1 2.6299 0.3618 -4.7684 19 6 1.8425 1.7697 -6.1663 20 7 1.2020 2.9074 -6.3242 21 14 2.3987 0.7959 -7.6601 22 1 1.3265 -0.1497 -8.0619 23 1 2.6825 1.7279 -8.7810 24 1 3.6295 0.0354 -7.3251 25 1 -0.3633 0.5623 -0.8602 26 1 -0.3633 -1.0261 -0.0569 27 1 -0.3633 0.4637 0.9170 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8743 0.8739 0.9761 31 1 3.9895 0.9884 -0.7964 32 1 4.2585 3.1378 -1.8878 33 1 5.0576 5.4582 -1.6862 34 1 5.3235 6.4798 0.5384 35 1 4.7811 5.1841 2.5610 36 1 3.9724 2.8673 2.3589 37 1 0.6321 2.2576 -1.2618 38 1 1.6010 0.3560 -2.4047 39 1 3.1513 1.2305 -2.3975 40 1 -0.1599 2.7650 -4.6304 41 1 -0.3326 1.2519 -3.7088 42 1 -0.1911 2.8053 -2.8515 43 1 1.9850 4.0329 -2.8414 44 1 3.3938 3.3539 -3.6915 45 1 2.0166 3.9921 -4.6207 46 1 1.0180 3.2406 -7.2163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459738058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:56 Heat of formation + Delta-G solvation = 6.647184 kcal Electronic energy + Delta-G solvation = -22454.171014 eV Core-core repulsion = 19535.818583 eV Total energy + Delta-G solvation = -2918.352431 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.26183 -37.69900 -35.24514 -32.18758 -31.77103 -30.49996 -29.88464 -27.57676 -25.56520 -25.25415 -24.40532 -23.48218 -22.18358 -20.86682 -19.75193 -18.06068 -16.43206 -16.34718 -15.46558 -14.87652 -14.77406 -14.63415 -14.31516 -13.74646 -13.56847 -13.11368 -12.94047 -12.64048 -12.42440 -12.30510 -12.07409 -11.93556 -11.41577 -11.34929 -11.18984 -11.04269 -10.84521 -10.65114 -10.59693 -10.55884 -10.44205 -10.28113 -10.04080 -9.97068 -9.30012 -9.01872 -8.59779 -8.52638 -8.28771 -8.25217 -7.55248 -5.89101 -3.99372 1.72301 1.80262 3.31614 3.39011 3.41748 4.15401 4.45329 4.82055 5.01093 5.19406 5.22931 5.31067 5.33307 5.36354 5.38559 5.47498 5.67623 5.82469 5.86270 5.89735 5.95271 6.06882 6.08742 6.14989 6.30312 6.38435 6.41424 6.43073 6.51645 6.60941 6.78196 6.78616 6.91861 6.95413 7.07541 7.14604 7.20633 7.39927 7.44156 7.53032 7.78597 7.80426 7.89372 8.05866 8.25155 8.39338 8.59224 9.02616 9.65707 11.11084 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.005766 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.106502 B = 4855.023288 C = 5891.324964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.162 4.162 3 C 0.093 3.907 4 H 0.071 0.929 5 C -0.075 4.075 6 C -0.060 4.060 7 C -0.084 4.084 8 C -0.120 4.120 9 C -0.132 4.132 10 C -0.130 4.130 11 C -0.127 4.127 12 N -0.674 5.674 13 C 0.071 3.929 14 C 0.070 3.930 15 C -0.131 4.131 16 C -0.116 4.116 17 C -0.505 4.505 18 H 0.050 0.950 19 C 0.066 3.934 20 N -0.884 5.884 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.276 1.276 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.337 0.663 38 H 0.017 0.983 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.017 0.983 42 H 0.010 0.990 43 H 0.022 0.978 44 H 0.016 0.984 45 H 0.071 0.929 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 -0.040 14.202 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.201 4.201 3 C -0.017 4.017 4 H 0.089 0.911 5 C -0.113 4.113 6 C -0.060 4.060 7 C -0.102 4.102 8 C -0.139 4.139 9 C -0.151 4.151 10 C -0.148 4.148 11 C -0.145 4.145 12 N -0.305 5.305 13 C -0.058 4.058 14 C 0.070 3.930 15 C -0.189 4.189 16 C -0.174 4.174 17 C -0.544 4.544 18 H 0.068 0.932 19 C -0.135 4.135 20 N -0.523 5.523 21 Si 0.714 3.286 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.201 1.201 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.150 0.850 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.157 0.843 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.036 0.964 42 H 0.029 0.971 43 H 0.041 0.959 44 H 0.035 0.965 45 H 0.090 0.910 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.713 0.514 14.034 14.526 hybrid contribution -0.404 -1.301 -0.872 1.618 sum 3.309 -0.788 13.162 13.595 Atomic orbital electron populations 1.21744 0.95964 1.01468 1.01681 1.22288 0.96278 0.99288 1.02239 1.21516 0.93979 0.91939 0.94310 0.91084 1.20699 0.95466 0.93008 1.02139 1.19688 0.97393 0.96060 0.92812 1.21287 0.95816 0.93982 0.99096 1.21161 0.99854 0.95698 0.97142 1.21027 1.01660 0.99448 0.92921 1.20954 1.01105 0.94813 0.97978 1.20939 1.01319 0.95467 0.96811 1.60734 1.19852 1.49090 1.00832 1.22215 0.98839 0.94364 0.90348 1.18070 0.92105 0.93034 0.89829 1.21822 0.98381 0.98231 1.00455 1.21658 0.97141 0.98351 1.00258 1.21114 1.36336 1.06366 0.90578 0.93174 1.24870 0.95156 0.94894 0.98583 1.69834 1.41097 1.19539 1.21811 0.86709 0.78968 0.79934 0.83007 1.20939 1.21351 1.20111 0.92283 0.93091 0.93150 0.91051 0.92460 0.91681 0.90619 0.85036 0.86524 0.86996 0.87042 0.87034 0.84321 0.96445 0.92606 0.90014 0.96390 0.97105 0.95922 0.96453 0.91012 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.74 37.16 0.36 -1.55 16 2 C -0.16 -2.11 5.01 -26.73 -0.13 -2.25 16 3 C 0.09 1.31 2.53 -67.71 -0.17 1.14 16 4 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 5 C -0.08 -1.04 4.73 -27.88 -0.13 -1.17 16 6 C -0.06 -0.87 4.95 -104.62 -0.52 -1.39 16 7 C -0.08 -1.36 9.32 -39.58 -0.37 -1.73 16 8 C -0.12 -1.80 10.05 -39.59 -0.40 -2.20 16 9 C -0.13 -1.77 10.05 -39.59 -0.40 -2.17 16 10 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 11 C -0.13 -1.69 9.70 -39.58 -0.38 -2.07 16 12 N -0.67 -11.31 4.88 -106.72 -0.52 -11.83 16 13 C 0.07 1.38 3.71 -3.82 -0.01 1.37 16 14 C 0.07 1.63 0.57 -155.66 -0.09 1.55 16 15 C -0.13 -3.05 7.92 37.16 0.29 -2.75 16 16 C -0.12 -2.74 7.70 37.16 0.29 -2.45 16 17 C -0.51 -13.31 8.01 -34.44 -0.28 -13.58 16 18 H 0.05 1.33 7.74 -52.49 -0.41 0.92 16 19 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 20 N -0.88 -24.28 9.35 55.43 0.52 -23.76 16 21 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H 0.06 0.84 6.84 -51.93 -0.35 0.48 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.05 6.13 -51.93 -0.32 0.73 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.08 1.14 6.23 -51.93 -0.32 0.81 16 32 H 0.13 2.37 5.75 -52.49 -0.30 2.07 16 33 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 34 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.34 5.77 5.54 -39.29 -0.22 5.56 16 38 H 0.02 0.35 6.22 -51.93 -0.32 0.03 16 39 H 0.06 1.12 5.78 -51.93 -0.30 0.82 16 40 H 0.08 2.13 6.07 -51.94 -0.32 1.82 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.01 0.21 6.61 -51.93 -0.34 -0.13 16 43 H 0.02 0.49 7.60 -51.93 -0.39 0.10 16 44 H 0.02 0.39 6.87 -51.92 -0.36 0.03 16 45 H 0.07 1.89 6.07 -51.93 -0.32 1.57 16 46 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -26.68 347.05 -9.85 -36.54 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -7.63 Total: 7.48 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: -2.43 Total: -29.65 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.00 Total: -35.59 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.68 -9.85 -36.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459738058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.185 kcal (2) G-P(sol) polarization free energy of solvation -26.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds