Wall clock time and date at job start Mon Mar 30 2020 01:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47162 * 2 1 4 4 H 1.08995 * 109.47074 * 56.05108 * 3 2 1 5 5 C 1.52999 * 109.47127 * 176.05694 * 3 2 1 6 6 C 1.50699 * 109.46998 * 185.00084 * 5 3 2 7 7 C 1.38238 * 120.00159 * 269.72888 * 6 5 3 8 8 C 1.38232 * 120.00032 * 179.76805 * 7 6 5 9 9 C 1.38230 * 119.99952 * 0.50152 * 8 7 6 10 10 C 1.38235 * 120.00362 * 359.74879 * 9 8 7 11 11 C 1.38238 * 119.99826 * 359.97438 * 10 9 8 12 12 N 1.46906 * 109.47008 * 296.05712 * 3 2 1 13 13 C 1.46901 * 110.99739 * 305.54389 * 12 3 2 14 14 C 1.53001 * 109.47041 * 181.50374 * 13 12 3 15 15 C 1.53004 * 109.47196 * 300.00139 * 14 13 12 16 16 C 1.53001 * 109.47181 * 59.99787 * 14 13 12 17 17 C 1.50695 * 109.47273 * 180.02562 * 14 13 12 18 18 H 1.07994 * 119.99916 * 359.97438 * 17 14 13 19 19 C 1.37882 * 119.99997 * 180.02562 * 17 14 13 20 20 N 1.31509 * 119.99972 * 359.97438 * 19 17 14 21 21 Si 1.86795 * 119.99984 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47169 * 89.99545 * 21 19 17 23 23 H 1.48502 * 109.47010 * 209.99987 * 21 19 17 24 24 H 1.48507 * 109.47057 * 329.99850 * 21 19 17 25 25 H 1.09003 * 109.46935 * 56.83040 * 1 2 3 26 26 H 1.08997 * 109.46762 * 176.82862 * 1 2 3 27 27 H 1.08995 * 109.46928 * 296.82431 * 1 2 3 28 28 H 1.09002 * 109.47170 * 239.99900 * 2 1 3 29 29 H 1.08999 * 109.47523 * 120.00253 * 2 1 3 30 30 H 1.09000 * 109.46942 * 304.99932 * 5 3 2 31 31 H 1.08993 * 109.47411 * 65.00117 * 5 3 2 32 32 H 1.07999 * 119.99572 * 359.97438 * 7 6 5 33 33 H 1.08003 * 119.99806 * 180.22843 * 8 7 6 34 34 H 1.08010 * 119.99934 * 179.72908 * 9 8 7 35 35 H 1.07996 * 120.00444 * 179.97438 * 10 9 8 36 36 H 1.07994 * 119.99892 * 179.97438 * 11 10 9 37 37 H 1.00898 * 111.00154 * 69.49562 * 12 3 2 38 38 H 1.08998 * 109.46920 * 61.50749 * 13 12 3 39 39 H 1.09000 * 109.47323 * 301.50249 * 13 12 3 40 40 H 1.08989 * 109.47244 * 179.97438 * 15 14 13 41 41 H 1.08999 * 109.46891 * 300.00202 * 15 14 13 42 42 H 1.09000 * 109.47036 * 59.99987 * 15 14 13 43 43 H 1.09000 * 109.47412 * 300.00234 * 16 14 13 44 44 H 1.09008 * 109.46709 * 60.00085 * 16 14 13 45 45 H 1.08994 * 109.47766 * 179.97438 * 16 14 13 46 46 H 0.96995 * 119.99990 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6201 1.9763 0.8524 5 6 3.5668 1.4437 0.0992 6 6 4.0611 2.8619 0.2229 7 6 4.3706 3.5875 -0.9123 8 6 4.8194 4.8900 -0.7991 9 6 4.9686 5.4635 0.4498 10 6 4.6641 4.7362 1.5852 11 6 4.2099 3.4356 1.4718 12 7 1.6297 2.1070 -1.2443 13 6 2.0672 1.3411 -2.4190 14 6 1.6553 2.0817 -3.6929 15 6 0.1335 2.2371 -3.7232 16 6 2.3095 3.4646 -3.7131 17 6 2.1035 1.2958 -4.8981 18 1 2.6299 0.3618 -4.7684 19 6 1.8425 1.7697 -6.1663 20 7 1.2020 2.9074 -6.3242 21 14 2.3987 0.7959 -7.6601 22 1 1.3265 -0.1497 -8.0619 23 1 2.6825 1.7279 -8.7810 24 1 3.6295 0.0354 -7.3251 25 1 -0.3633 0.5623 -0.8602 26 1 -0.3633 -1.0261 -0.0569 27 1 -0.3633 0.4637 0.9170 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8743 0.8739 0.9761 31 1 3.9895 0.9884 -0.7964 32 1 4.2585 3.1378 -1.8878 33 1 5.0576 5.4582 -1.6862 34 1 5.3235 6.4798 0.5384 35 1 4.7811 5.1841 2.5610 36 1 3.9724 2.8673 2.3589 37 1 0.6321 2.2576 -1.2618 38 1 1.6010 0.3560 -2.4047 39 1 3.1513 1.2305 -2.3975 40 1 -0.1599 2.7650 -4.6304 41 1 -0.3326 1.2519 -3.7088 42 1 -0.1911 2.8053 -2.8515 43 1 1.9850 4.0329 -2.8414 44 1 3.3938 3.3539 -3.6915 45 1 2.0166 3.9921 -4.6207 46 1 1.0180 3.2406 -7.2163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459738058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:55 Heat of formation + Delta-G solvation = -4.998796 kcal Electronic energy + Delta-G solvation = -22454.676021 eV Core-core repulsion = 19535.818583 eV Total energy + Delta-G solvation = -2918.857438 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41598 -39.01504 -36.91811 -33.68960 -33.13337 -31.58016 -31.35395 -28.74891 -27.48321 -27.23702 -26.00407 -24.61520 -23.26273 -21.93068 -21.21102 -19.64734 -18.08512 -17.49969 -17.17753 -16.35839 -16.05411 -15.87657 -15.58982 -15.06409 -14.91141 -14.57698 -14.18433 -13.97383 -13.87389 -13.80147 -13.42764 -13.10732 -13.07763 -12.92044 -12.60478 -12.56474 -12.42766 -12.35441 -12.09283 -12.07403 -11.73541 -11.66248 -11.54722 -11.43460 -11.10067 -10.85399 -10.53254 -10.30777 -9.61829 -9.37037 -8.93237 -7.94489 -6.10829 0.65606 0.72086 1.40690 1.43353 1.51161 2.46941 3.07299 3.27519 3.55329 3.91230 4.13837 4.19635 4.27184 4.30279 4.36635 4.44042 4.56714 4.63211 4.72011 4.78241 4.81659 4.84837 4.94184 4.95444 4.98826 5.04944 5.13918 5.14920 5.22679 5.32455 5.35151 5.37591 5.40902 5.46007 5.52051 5.62439 5.72643 5.74504 5.81845 5.83656 5.99403 6.25676 6.33409 6.36304 6.43988 6.56349 6.77336 7.00597 7.56651 9.03168 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.005766 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.106502 B = 4855.023288 C = 5891.324964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.156 4.156 3 C 0.097 3.903 4 H 0.085 0.915 5 C -0.072 4.072 6 C -0.069 4.069 7 C -0.108 4.108 8 C -0.139 4.139 9 C -0.136 4.136 10 C -0.128 4.128 11 C -0.128 4.128 12 N -0.675 5.675 13 C 0.094 3.906 14 C 0.062 3.938 15 C -0.118 4.118 16 C -0.095 4.095 17 C -0.522 4.522 18 H 0.042 0.958 19 C 0.023 3.977 20 N -0.903 5.903 21 Si 0.939 3.061 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.336 0.664 38 H 0.012 0.988 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.014 0.986 42 H 0.031 0.969 43 H 0.030 0.970 44 H 0.010 0.990 45 H 0.041 0.959 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.409 -0.328 16.820 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.195 4.195 3 C -0.014 4.014 4 H 0.103 0.897 5 C -0.110 4.110 6 C -0.069 4.069 7 C -0.126 4.126 8 C -0.157 4.157 9 C -0.154 4.154 10 C -0.146 4.146 11 C -0.145 4.145 12 N -0.306 5.306 13 C -0.035 4.035 14 C 0.061 3.939 15 C -0.176 4.176 16 C -0.153 4.153 17 C -0.560 4.560 18 H 0.060 0.940 19 C -0.176 4.176 20 N -0.542 5.542 21 Si 0.766 3.234 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.030 0.970 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.033 0.967 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.029 0.971 45 H 0.060 0.940 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.888 0.218 16.660 17.109 hybrid contribution -0.434 -1.176 -1.623 2.051 sum 3.455 -0.958 15.037 15.458 Atomic orbital electron populations 1.21727 0.95550 1.01770 1.01611 1.22217 0.96565 0.98379 1.02349 1.21587 0.94271 0.92538 0.92969 0.89657 1.20693 0.95027 0.92879 1.02374 1.19805 0.97686 0.96364 0.93048 1.21160 0.98017 0.94902 0.98530 1.21280 1.00637 0.95540 0.98225 1.21317 1.01105 1.00581 0.92353 1.21359 0.99598 0.94591 0.99067 1.21252 1.00455 0.95934 0.96892 1.60646 1.19660 1.49229 1.01109 1.21768 0.98061 0.93681 0.89972 1.18121 0.92092 0.92836 0.90837 1.21640 0.98265 0.97864 0.99845 1.21411 0.96590 0.98362 0.98931 1.21436 1.36220 1.06376 0.92014 0.94000 1.25496 0.95436 0.95747 1.00895 1.69973 1.41742 1.20479 1.22037 0.85858 0.78583 0.78758 0.80177 1.20579 1.21241 1.19870 0.94304 0.92435 0.91437 0.93144 0.90075 0.89018 0.92660 0.87969 0.86799 0.84766 0.83974 0.84362 0.84458 0.97025 0.93539 0.92957 0.96671 0.95038 0.95055 0.97136 0.93994 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.74 71.98 0.70 -2.76 16 2 C -0.16 -3.75 5.01 30.60 0.15 -3.60 16 3 C 0.10 2.52 2.53 44.91 0.11 2.63 16 4 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 5 C -0.07 -1.87 4.73 29.85 0.14 -1.73 16 6 C -0.07 -1.93 4.95 -19.86 -0.10 -2.03 16 7 C -0.11 -3.53 9.32 22.27 0.21 -3.32 16 8 C -0.14 -4.15 10.05 22.27 0.22 -3.92 16 9 C -0.14 -3.35 10.05 22.27 0.22 -3.12 16 10 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 11 C -0.13 -2.97 9.70 22.27 0.22 -2.76 16 12 N -0.68 -22.28 4.88 -491.56 -2.40 -24.68 16 13 C 0.09 3.73 3.71 86.30 0.32 4.05 16 14 C 0.06 2.94 0.57 -52.93 -0.03 2.91 16 15 C -0.12 -5.57 7.92 71.98 0.57 -5.00 16 16 C -0.10 -4.61 7.70 71.98 0.55 -4.06 16 17 C -0.52 -28.12 8.01 25.60 0.21 -27.92 16 18 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 19 C 0.02 1.26 5.15 84.66 0.44 1.70 16 20 N -0.90 -50.83 9.35 21.45 0.20 -50.63 16 21 Si 0.94 43.73 29.54 68.60 2.03 45.76 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 25 H 0.04 1.05 6.84 -2.39 -0.02 1.03 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 1.44 6.13 -2.39 -0.01 1.42 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.87 8.09 -2.39 -0.02 1.85 16 31 H 0.05 1.66 6.23 -2.39 -0.01 1.64 16 32 H 0.10 3.89 5.75 -2.91 -0.02 3.87 16 33 H 0.11 3.30 8.06 -2.91 -0.02 3.28 16 34 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 37 H 0.34 11.20 5.54 -89.70 -0.50 10.70 16 38 H 0.01 0.48 6.22 -2.39 -0.01 0.46 16 39 H 0.05 1.93 5.78 -2.39 -0.01 1.92 16 40 H 0.05 2.78 6.07 -2.39 -0.01 2.76 16 41 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.03 1.31 6.61 -2.39 -0.02 1.29 16 43 H 0.03 1.41 7.60 -2.39 -0.02 1.39 16 44 H 0.01 0.47 6.87 -2.38 -0.02 0.46 16 45 H 0.04 2.27 6.07 -2.39 -0.01 2.26 16 46 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -58.19 347.05 4.44 -53.76 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.45 Total: 27.35 kcal Atomic # 6 Polarization: -55.71 SS G_CDS: 4.16 Total: -51.55 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -2.20 Total: -75.31 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -58.19 4.44 -53.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459738058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.756 kcal (2) G-P(sol) polarization free energy of solvation -58.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds