Wall clock time and date at job start Mon Mar 30 2020 01:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.53005 * 109.46991 * 184.99870 * 4 2 1 6 6 C 1.50696 * 109.46948 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00224 * 269.72773 * 6 5 4 8 8 C 1.38240 * 119.99959 * 179.76345 * 7 6 5 9 9 C 1.38228 * 119.99905 * 0.50984 * 8 7 6 10 10 C 1.38238 * 120.00394 * 359.74484 * 9 8 7 11 11 C 1.38235 * 119.99406 * 359.97438 * 10 9 8 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.52993 * 109.46779 * 179.97438 * 13 12 2 15 15 C 1.53003 * 109.47616 * 299.99971 * 14 13 12 16 16 C 1.53000 * 109.47605 * 59.99999 * 14 13 12 17 17 C 1.50701 * 109.47197 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99545 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00687 * 180.02562 * 17 14 13 20 20 N 1.31519 * 119.99687 * 359.97438 * 19 17 14 21 21 Si 1.86791 * 120.00294 * 180.02562 * 19 17 14 22 22 H 1.48509 * 109.47199 * 90.00020 * 21 19 17 23 23 H 1.48500 * 109.47177 * 209.99822 * 21 19 17 24 24 H 1.48500 * 109.47325 * 329.99921 * 21 19 17 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 29 29 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 30 30 H 1.08996 * 109.46933 * 299.99587 * 5 4 2 31 31 H 1.09006 * 109.47013 * 60.00029 * 5 4 2 32 32 H 1.08001 * 119.99783 * 0.02562 * 7 6 5 33 33 H 1.07998 * 119.99703 * 180.22542 * 8 7 6 34 34 H 1.08002 * 120.00182 * 179.71749 * 9 8 7 35 35 H 1.07997 * 120.00376 * 179.97438 * 10 9 8 36 36 H 1.08006 * 119.99792 * 179.97438 * 11 10 9 37 37 H 1.00897 * 111.00496 * 208.95166 * 12 2 1 38 38 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 39 39 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 40 40 H 1.08995 * 109.47025 * 60.00030 * 15 14 13 41 41 H 1.08995 * 109.47259 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.46596 * 300.00171 * 15 14 13 43 43 H 1.09000 * 109.47147 * 59.99395 * 16 14 13 44 44 H 1.08995 * 109.47831 * 179.97438 * 16 14 13 45 45 H 1.09008 * 109.47199 * 299.99990 * 16 14 13 46 46 H 0.97001 * 119.99859 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3137 6 6 4.0671 -1.3232 2.5444 7 6 4.2045 -0.6318 3.7335 8 6 4.6606 -1.2843 4.8637 9 6 4.9893 -2.6255 4.8021 10 6 4.8570 -3.3157 3.6118 11 6 4.3954 -2.6647 2.4831 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5962 -0.5330 -3.5741 15 6 3.9935 -1.0852 -3.2851 16 6 1.6473 -1.6894 -3.8954 17 6 2.6601 0.4056 -4.7514 18 1 2.3643 1.4378 -4.6358 19 6 3.0962 -0.0534 -5.9762 20 7 3.4569 -1.3103 -6.1170 21 14 3.1760 1.1101 -7.4353 22 1 4.5123 1.7566 -7.4804 23 1 2.9526 0.3473 -8.6896 24 1 2.1268 2.1517 -7.2959 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6055 -0.2618 2.1370 29 1 1.7516 -1.7716 1.2057 30 1 3.9994 -1.0729 0.4260 31 1 3.8532 0.4370 1.3573 32 1 3.9515 0.4171 3.7806 33 1 4.7645 -0.7449 5.7936 34 1 5.3500 -3.1341 5.6840 35 1 5.1142 -4.3635 3.5636 36 1 4.2923 -3.2038 1.5529 37 1 2.9173 -1.1206 -1.0288 38 1 1.0871 0.6162 -2.5525 39 1 2.7589 1.0461 -2.1182 40 1 3.9469 -1.7642 -2.4337 41 1 4.3597 -1.6231 -4.1596 42 1 4.6696 -0.2614 -3.0563 43 1 0.6518 -1.2960 -4.1013 44 1 2.0130 -2.2274 -4.7699 45 1 1.6006 -2.3684 -3.0439 46 1 3.7641 -1.6332 -6.9786 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459738203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:57 Heat of formation + Delta-G solvation = 0.264542 kcal Electronic energy + Delta-G solvation = -21338.456021 eV Core-core repulsion = 18419.826818 eV Total energy + Delta-G solvation = -2918.629203 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.44653 -37.64889 -35.43767 -33.10576 -31.48194 -30.97244 -29.24171 -28.36005 -25.53531 -25.19560 -24.41839 -23.34609 -22.65082 -21.01974 -19.97143 -18.42211 -16.87658 -16.00187 -15.52490 -15.49614 -15.02617 -14.74740 -14.34578 -13.84321 -13.52268 -13.26501 -13.11060 -12.85946 -12.60923 -12.53223 -12.12287 -11.87749 -11.53675 -11.37361 -11.31386 -11.22718 -10.98644 -10.91004 -10.72738 -10.64601 -10.55837 -10.29772 -10.09857 -10.02046 -9.34724 -9.01479 -9.00052 -8.74234 -8.58562 -8.26639 -7.63264 -5.88922 -3.99136 1.27350 1.30911 3.32383 3.39459 3.42590 3.69494 4.45556 4.65577 4.75020 4.82864 4.89168 5.02321 5.16820 5.17637 5.32230 5.36474 5.44824 5.50014 5.69103 5.73470 5.89316 5.90010 5.97381 6.01652 6.16814 6.23469 6.34901 6.37665 6.41432 6.41981 6.44880 6.60314 6.62534 6.76509 6.92724 6.93217 7.11273 7.20390 7.42223 7.51846 7.78299 7.80227 7.88435 8.06223 8.24933 8.38290 8.59180 9.02501 9.65747 11.11541 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.026205 B = 0.003477 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.233169 B = 8050.595764 C = 8507.634837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.080 3.920 3 H 0.036 0.964 4 C -0.111 4.111 5 C -0.088 4.088 6 C -0.072 4.072 7 C -0.120 4.120 8 C -0.121 4.121 9 C -0.131 4.131 10 C -0.119 4.119 11 C -0.116 4.116 12 N -0.683 5.683 13 C 0.076 3.924 14 C 0.069 3.931 15 C -0.131 4.131 16 C -0.118 4.118 17 C -0.506 4.506 18 H 0.051 0.949 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.888 3.112 22 H -0.283 1.283 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.336 0.664 38 H 0.055 0.945 39 H 0.011 0.989 40 H 0.009 0.991 41 H 0.083 0.917 42 H 0.018 0.982 43 H 0.017 0.983 44 H 0.073 0.927 45 H 0.020 0.980 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.749 -1.255 19.276 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.030 4.030 3 H 0.054 0.946 4 C -0.149 4.149 5 C -0.126 4.126 6 C -0.072 4.072 7 C -0.138 4.138 8 C -0.139 4.139 9 C -0.149 4.149 10 C -0.137 4.137 11 C -0.134 4.134 12 N -0.317 5.317 13 C -0.053 4.053 14 C 0.068 3.932 15 C -0.189 4.189 16 C -0.176 4.176 17 C -0.545 4.545 18 H 0.069 0.931 19 C -0.136 4.136 20 N -0.524 5.524 21 Si 0.716 3.284 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.201 1.201 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.157 0.843 38 H 0.074 0.926 39 H 0.029 0.971 40 H 0.028 0.972 41 H 0.101 0.899 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.092 0.908 45 H 0.039 0.961 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.197 -1.623 18.958 19.028 hybrid contribution 0.880 1.242 -0.593 1.633 sum 1.077 -0.382 18.365 18.400 Atomic orbital electron populations 1.21749 0.95094 1.01971 1.00596 1.21515 0.95707 0.95690 0.90097 0.94630 1.21738 0.93626 1.01889 0.97644 1.20733 0.96413 1.00229 0.95222 1.19959 0.97824 0.94132 0.95287 1.21065 1.00302 0.99873 0.92584 1.21112 0.99675 0.94879 0.98249 1.21110 1.01136 0.94755 0.97893 1.21160 0.99608 0.99870 0.93026 1.21162 0.99112 0.94293 0.98811 1.60695 1.33437 1.33858 1.03707 1.22174 0.99078 0.93048 0.90956 1.18084 0.91756 0.93165 0.90177 1.21826 0.98839 0.98338 0.99902 1.21630 0.97307 0.98402 1.00258 1.21127 1.43381 0.95850 0.94131 0.93065 1.24883 0.95312 0.94971 0.98421 1.69838 1.44663 1.13930 1.23944 0.86670 0.78226 0.81050 0.82449 1.20893 1.21313 1.20086 0.92640 0.93560 0.92269 0.91781 0.91001 0.90483 0.91141 0.86261 0.86363 0.86431 0.86179 0.85756 0.84270 0.92633 0.97093 0.97160 0.89867 0.96298 0.96374 0.90820 0.96123 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.41 37.16 0.35 -1.54 16 2 C 0.08 1.17 2.65 -67.71 -0.18 0.99 16 3 H 0.04 0.54 7.80 -51.93 -0.40 0.13 16 4 C -0.11 -1.36 4.79 -26.73 -0.13 -1.49 16 5 C -0.09 -1.06 5.18 -27.88 -0.14 -1.21 16 6 C -0.07 -0.84 5.13 -104.63 -0.54 -1.37 16 7 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 8 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 9 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 10 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 11 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 12 N -0.68 -12.05 5.52 -106.72 -0.59 -12.64 16 13 C 0.08 1.59 4.38 -3.82 -0.02 1.58 16 14 C 0.07 1.67 0.57 -155.66 -0.09 1.58 16 15 C -0.13 -3.10 7.92 37.16 0.29 -2.81 16 16 C -0.12 -2.90 8.09 37.16 0.30 -2.60 16 17 C -0.51 -13.73 8.01 -34.44 -0.28 -14.00 16 18 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 19 C 0.06 1.77 5.15 -17.82 -0.09 1.68 16 20 N -0.88 -24.63 9.35 55.43 0.52 -24.11 16 21 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.05 0.84 7.45 -51.93 -0.39 0.45 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.00 6.37 -51.93 -0.33 0.67 16 31 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.34 5.84 4.51 -39.29 -0.18 5.67 16 38 H 0.06 1.20 7.44 -51.93 -0.39 0.82 16 39 H 0.01 0.23 8.06 -51.93 -0.42 -0.19 16 40 H 0.01 0.20 6.57 -51.93 -0.34 -0.14 16 41 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 45 H 0.02 0.46 7.60 -51.92 -0.39 0.07 16 46 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -27.84 357.77 -10.26 -38.10 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -8.08 Total: 4.41 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -2.48 Total: -27.38 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.07 Total: -36.75 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.84 -10.26 -38.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459738203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.369 kcal (2) G-P(sol) polarization free energy of solvation -27.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds