Wall clock time and date at job start Mon Mar 30 2020 01:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47612 * 2 1 4 4 C 1.53000 * 109.47443 * 120.00170 * 2 1 3 5 5 C 1.52998 * 109.47658 * 174.99448 * 4 2 1 6 6 C 1.52990 * 109.47389 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47389 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47762 * 305.00629 * 7 6 5 9 9 C 1.52999 * 109.47362 * 185.00435 * 7 6 5 10 10 N 1.46504 * 109.46834 * 65.00225 * 7 6 5 11 11 C 1.38856 * 120.00078 * 205.00023 * 10 7 6 12 12 C 1.39562 * 119.84199 * 0.22471 * 11 10 7 13 13 C 1.36341 * 120.16021 * 180.23459 * 12 11 10 14 14 C 1.40888 * 119.83578 * 359.51737 * 13 12 11 15 15 C 1.41136 * 120.15392 * 180.27284 * 14 13 12 16 16 H 1.08007 * 119.99406 * 154.52969 * 15 14 13 17 17 C 1.39864 * 120.00199 * 334.53548 * 15 14 13 18 18 N 1.30904 * 120.00281 * 343.06053 * 17 15 14 19 19 Si 1.86802 * 119.99788 * 163.06168 * 17 15 14 20 20 H 1.48498 * 109.47285 * 59.99889 * 19 17 15 21 21 H 1.48498 * 109.46963 * 180.02562 * 19 17 15 22 22 H 1.48509 * 109.47218 * 299.99644 * 19 17 15 23 23 C 1.40882 * 119.68836 * 0.25945 * 14 13 12 24 24 C 1.36340 * 119.83624 * 359.97438 * 23 14 13 25 25 H 1.08994 * 109.46952 * 300.00177 * 1 2 3 26 26 H 1.08998 * 109.47166 * 59.99415 * 1 2 3 27 27 H 1.08998 * 109.47378 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47279 * 239.99938 * 2 1 3 29 29 H 1.09005 * 109.46773 * 300.00197 * 3 2 1 30 30 H 1.08998 * 109.46630 * 59.99823 * 3 2 1 31 31 H 1.08996 * 109.47792 * 180.02562 * 3 2 1 32 32 H 1.09010 * 109.47011 * 54.99779 * 4 2 1 33 33 H 1.09000 * 109.46749 * 295.00047 * 4 2 1 34 34 H 1.09010 * 109.46639 * 60.00103 * 5 4 2 35 35 H 1.08994 * 109.47063 * 300.00656 * 5 4 2 36 36 H 1.09010 * 109.46931 * 60.00545 * 6 5 4 37 37 H 1.08994 * 109.47769 * 300.00487 * 6 5 4 38 38 H 1.09003 * 109.47081 * 300.00012 * 9 7 6 39 39 H 1.08993 * 109.47327 * 60.00235 * 9 7 6 40 40 H 1.09000 * 109.47211 * 180.02562 * 9 7 6 41 41 H 0.96998 * 119.99888 * 25.00371 * 10 7 6 42 42 H 1.08000 * 119.92300 * 0.03401 * 12 11 10 43 43 H 1.08002 * 120.08306 * 179.79978 * 13 12 11 44 44 H 0.96996 * 119.99982 * 179.97438 * 18 17 15 45 45 H 1.07999 * 120.08467 * 180.02562 * 23 14 13 46 46 H 1.08000 * 119.91825 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8312 1.1879 6 6 4.0749 -1.5519 2.4373 7 6 5.5996 -1.6624 2.3757 8 1 5.8915 -2.1478 1.4444 9 6 6.0993 -2.4909 3.5610 10 7 6.1890 -0.3224 2.4335 11 6 7.4470 -0.0933 1.8922 12 6 8.1451 -1.1409 1.2896 13 6 9.3827 -0.9243 0.7603 14 6 9.9524 0.3632 0.8136 15 6 11.2307 0.5962 0.2626 16 1 11.5014 1.5862 -0.0737 17 6 12.1467 -0.4549 0.1519 18 7 11.9683 -1.5539 0.8403 19 14 13.6250 -0.2904 -0.9783 20 1 14.4534 0.8634 -0.5450 21 1 14.4355 -1.5331 -0.9171 22 1 13.1607 -0.0709 -2.3718 23 6 9.2399 1.4169 1.4192 24 6 8.0052 1.1846 1.9487 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6054 -1.7199 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 3.9995 0.1674 1.1420 35 1 3.8531 -1.3941 0.3002 36 1 3.6402 -2.5505 2.4837 37 1 3.7866 -0.9887 3.3249 38 1 5.8075 -2.0055 4.4923 39 1 5.6608 -3.4878 3.5180 40 1 7.1856 -2.5692 3.5173 41 1 5.7005 0.4048 2.8500 42 1 7.7052 -2.1262 1.2454 43 1 9.9231 -1.7366 0.2971 44 1 12.6034 -2.2830 0.7633 45 1 9.6704 2.4064 1.4632 46 1 7.4577 1.9916 2.4129 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000468477534.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:43 Heat of formation + Delta-G solvation = -17.645256 kcal Electronic energy + Delta-G solvation = -20966.339268 eV Core-core repulsion = 18046.933438 eV Total energy + Delta-G solvation = -2919.405830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.42093 -37.28246 -35.87622 -33.56514 -31.96923 -30.22216 -29.37901 -27.95032 -27.30451 -26.27231 -24.26122 -22.11729 -21.52176 -20.57020 -20.04980 -19.30474 -17.16423 -16.40858 -15.52566 -15.27828 -14.87461 -14.45753 -14.13251 -13.87358 -13.64161 -13.33900 -12.99089 -12.64422 -12.47874 -12.35177 -12.11600 -11.94475 -11.87506 -11.71358 -11.51595 -11.41736 -11.27674 -11.02262 -10.97919 -10.82061 -10.68915 -10.59806 -10.40328 -10.35828 -10.14540 -9.64952 -9.23019 -9.17419 -8.47186 -7.44175 -6.58710 -6.31692 -3.98870 2.96970 3.14467 3.16659 3.19929 3.40310 4.08782 4.38380 4.58132 4.76134 4.81160 4.82578 5.07487 5.21567 5.26908 5.45890 5.48697 5.57575 5.65028 5.69821 5.74872 5.75973 5.83762 5.88241 5.89312 6.01068 6.03123 6.09820 6.15146 6.17681 6.27233 6.32429 6.37915 6.46353 6.47680 6.63257 6.98558 7.02131 7.25023 7.40705 7.62149 7.74185 7.89916 8.19749 8.35228 8.56370 8.77086 8.86695 9.10768 9.20525 10.42714 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.023958 B = 0.003371 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.434413 B = 8303.791112 C = 8801.516620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.150 4.150 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.123 4.123 7 C 0.158 3.842 8 H 0.071 0.929 9 C -0.168 4.168 10 N -0.754 5.754 11 C 0.099 3.901 12 C -0.166 4.166 13 C -0.122 4.122 14 C 0.073 3.927 15 C -0.468 4.468 16 H 0.071 0.929 17 C 0.074 3.926 18 N -0.811 5.811 19 Si 0.902 3.098 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.267 1.267 23 C -0.186 4.186 24 C -0.162 4.162 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.382 0.618 42 H 0.089 0.911 43 H 0.117 0.883 44 H 0.276 0.724 45 H 0.090 0.910 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.137 -0.811 0.875 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.207 4.207 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.161 4.161 7 C 0.052 3.948 8 H 0.089 0.911 9 C -0.227 4.227 10 N -0.388 5.388 11 C 0.002 3.998 12 C -0.188 4.188 13 C -0.142 4.142 14 C 0.070 3.930 15 C -0.500 4.500 16 H 0.089 0.911 17 C -0.140 4.140 18 N -0.438 5.438 19 Si 0.728 3.272 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.191 1.191 23 C -0.206 4.206 24 C -0.185 4.185 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.214 0.786 42 H 0.107 0.893 43 H 0.135 0.865 44 H 0.086 0.914 45 H 0.108 0.892 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.012 -1.226 0.870 17.078 hybrid contribution 0.620 0.238 -0.207 0.695 sum -16.392 -0.988 0.663 16.435 Atomic orbital electron populations 1.21845 0.95667 1.01402 1.01499 1.21129 0.95224 0.96647 0.98697 1.21894 1.01796 0.95737 1.01277 1.21666 0.96076 0.99941 0.97423 1.21620 0.94416 1.01698 0.97882 1.21853 0.95363 1.00644 0.98252 1.20607 0.91151 0.85197 0.97895 0.91144 1.22312 1.02442 0.98959 0.98977 1.43960 1.17861 1.08569 1.68438 1.17346 0.86580 0.93807 1.02071 1.20120 0.96878 0.96090 1.05692 1.20937 0.93282 0.98358 1.01653 1.17476 0.92868 0.91187 0.91470 1.19322 0.97694 0.95847 1.37118 0.91097 1.25774 0.99097 0.94785 0.94381 1.69842 1.35428 1.05512 1.33032 0.86475 0.80985 0.78208 0.81556 1.19319 1.20631 1.19141 1.20542 0.96155 0.98675 1.05208 1.19798 0.97490 0.94037 1.07142 0.92886 0.92946 0.92930 0.91339 0.93108 0.92940 0.91942 0.92402 0.92304 0.91057 0.92176 0.91572 0.92143 0.93191 0.93122 0.91908 0.78599 0.89334 0.86505 0.91361 0.89206 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 2 C -0.10 -0.91 2.92 -90.62 -0.26 -1.18 16 3 C -0.15 -1.45 8.95 37.16 0.33 -1.11 16 4 C -0.11 -1.08 4.68 -26.73 -0.13 -1.20 16 5 C -0.12 -1.34 4.86 -26.74 -0.13 -1.47 16 6 C -0.12 -1.40 4.75 -26.74 -0.13 -1.53 16 7 C 0.16 2.31 2.26 -67.93 -0.15 2.16 16 8 H 0.07 1.14 6.44 -51.93 -0.33 0.80 16 9 C -0.17 -2.41 9.41 37.16 0.35 -2.06 16 10 N -0.75 -12.81 4.67 -52.03 -0.24 -13.06 16 11 C 0.10 2.14 6.65 -83.69 -0.56 1.59 16 12 C -0.17 -3.89 8.75 -39.77 -0.35 -4.24 16 13 C -0.12 -3.24 8.63 -39.26 -0.34 -3.58 16 14 C 0.07 1.99 5.57 -106.79 -0.59 1.40 16 15 C -0.47 -12.91 9.03 -37.87 -0.34 -13.25 16 16 H 0.07 1.89 7.90 -52.48 -0.41 1.47 16 17 C 0.07 1.95 5.15 -17.34 -0.09 1.86 16 18 N -0.81 -21.83 10.96 55.54 0.61 -21.22 16 19 Si 0.90 19.53 29.59 -169.99 -5.03 14.50 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 C -0.19 -4.65 9.74 -39.27 -0.38 -5.04 16 24 C -0.16 -3.67 9.82 -39.77 -0.39 -4.06 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.68 6.57 -51.93 -0.34 0.34 16 32 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.90 6.18 -51.92 -0.32 0.58 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 1.07 7.69 -51.93 -0.40 0.67 16 41 H 0.38 5.90 8.60 -40.82 -0.35 5.54 16 42 H 0.09 1.91 6.06 -52.49 -0.32 1.59 16 43 H 0.12 3.21 6.19 -52.49 -0.32 2.89 16 44 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 45 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 46 H 0.08 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -27.64 362.78 -10.30 -37.93 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -8.28 Total: 8.93 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: -2.82 Total: -32.54 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.37 Total: -34.28 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.64 -10.30 -37.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000468477534.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.286 kcal (2) G-P(sol) polarization free energy of solvation -27.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds