Wall clock time and date at job start Mon Mar 30 2020 01:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.47033 * 2 1 4 4 N 1.46494 * 109.46887 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00074 * 85.56009 * 4 3 2 6 6 H 1.08002 * 120.00001 * 33.83231 * 5 4 3 7 7 C 1.38807 * 120.00258 * 214.11642 * 5 4 3 8 8 N 1.31621 * 120.00222 * 206.50195 * 7 5 4 9 9 Si 1.86802 * 120.00148 * 26.49758 * 7 5 4 10 10 H 1.48502 * 109.47065 * 1.37172 * 9 7 5 11 11 H 1.48494 * 109.47325 * 121.37423 * 9 7 5 12 12 H 1.48504 * 109.47105 * 241.37655 * 9 7 5 13 13 C 1.46498 * 120.00304 * 265.56039 * 4 3 2 14 14 C 1.52998 * 109.47066 * 275.91368 * 13 4 3 15 15 H 1.09011 * 109.47099 * 55.55560 * 14 13 4 16 16 C 1.50697 * 109.47341 * 295.55725 * 14 13 4 17 17 C 1.38234 * 119.99811 * 299.72501 * 16 14 13 18 18 C 1.38240 * 119.99881 * 179.78799 * 17 16 14 19 19 C 1.38234 * 119.99946 * 0.43813 * 18 17 16 20 20 C 1.38243 * 120.00054 * 359.81530 * 19 18 17 21 21 C 1.38228 * 119.99718 * 359.97438 * 20 19 18 22 22 C 1.53001 * 109.47381 * 175.55461 * 14 13 4 23 23 C 1.52996 * 109.47251 * 179.67821 * 22 14 13 24 24 C 1.53002 * 109.46960 * 299.67598 * 22 14 13 25 25 H 1.08994 * 109.47070 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46910 * 300.00410 * 1 2 3 27 27 H 1.09002 * 109.46850 * 60.00132 * 1 2 3 28 28 H 1.08992 * 109.47236 * 240.00203 * 2 1 3 29 29 H 1.09002 * 109.46850 * 119.99868 * 2 1 3 30 30 H 1.09001 * 109.47113 * 60.00110 * 3 2 1 31 31 H 1.08995 * 109.46882 * 299.99896 * 3 2 1 32 32 H 0.97000 * 119.99681 * 359.97438 * 8 7 5 33 33 H 1.09001 * 109.47433 * 35.91351 * 13 4 3 34 34 H 1.09005 * 109.47446 * 155.91327 * 13 4 3 35 35 H 1.07995 * 120.00032 * 0.02562 * 17 16 14 36 36 H 1.07998 * 120.00187 * 180.27805 * 18 17 16 37 37 H 1.07995 * 120.00446 * 179.83324 * 19 18 17 38 38 H 1.07999 * 119.99626 * 179.97438 * 20 19 18 39 39 H 1.08005 * 120.00026 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47019 * 59.67446 * 22 14 13 41 41 H 1.09000 * 109.47416 * 59.99868 * 23 22 14 42 42 H 1.08998 * 109.47467 * 180.02562 * 23 22 14 43 43 H 1.08999 * 109.47175 * 300.00141 * 23 22 14 44 44 H 1.08998 * 109.47118 * 66.33319 * 24 22 14 45 45 H 1.08998 * 109.46778 * 186.33086 * 24 22 14 46 46 H 1.08997 * 109.47518 * 306.33346 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1902 1.3505 -1.1814 6 1 3.7878 1.8033 -2.0756 7 6 5.3991 0.6703 -1.2318 8 7 6.2958 0.9882 -2.1414 9 14 5.7536 -0.6962 -0.0085 10 1 4.5798 -0.8798 0.8824 11 1 6.0212 -1.9597 -0.7415 12 1 6.9417 -0.3355 0.8061 13 6 4.2370 1.5409 1.2658 14 6 4.3632 3.0114 1.6690 15 1 3.3718 3.4624 1.7132 16 6 5.2020 3.7411 0.6516 17 6 6.5078 3.3490 0.4233 18 6 7.2759 4.0156 -0.5130 19 6 6.7411 5.0798 -1.2146 20 6 5.4369 5.4752 -0.9825 21 6 4.6675 4.8059 -0.0493 22 6 5.0292 3.1082 3.0430 23 6 5.1627 4.5791 3.4426 24 6 4.1734 2.3744 4.0774 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 6.1116 1.6976 -2.7768 33 1 3.6976 0.9966 2.0410 34 1 5.2313 1.1108 1.1448 35 1 6.9267 2.5197 0.9737 36 1 8.2947 3.7065 -0.6946 37 1 7.3419 5.6023 -1.9442 38 1 5.0192 6.3070 -1.5303 39 1 3.6484 5.1145 0.1317 40 1 6.0183 2.6521 3.0003 41 1 4.1736 5.0352 3.4853 42 1 5.6375 4.6481 4.4213 43 1 5.7723 5.1019 2.7057 44 1 4.1708 1.3072 3.8556 45 1 4.5868 2.5376 5.0726 46 1 3.1528 2.7554 4.0409 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000474145764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:18 Heat of formation + Delta-G solvation = 10.155630 kcal Electronic energy + Delta-G solvation = -23112.476824 eV Core-core repulsion = 20194.276531 eV Total energy + Delta-G solvation = -2918.200293 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.61746 -38.28310 -36.79340 -34.54071 -33.06160 -31.90569 -31.56221 -29.29625 -27.67317 -27.19369 -25.12455 -23.67000 -23.14488 -22.33727 -21.41367 -20.31871 -19.20749 -17.79935 -16.65355 -16.38403 -16.12229 -15.82342 -15.51124 -15.31774 -15.04152 -14.82280 -14.29135 -14.21483 -14.08511 -14.00629 -13.41125 -13.16805 -13.04061 -12.85692 -12.85098 -12.56270 -12.42626 -12.21049 -12.09203 -11.99400 -11.83692 -11.68170 -11.50479 -11.44986 -11.27790 -11.16337 -11.02029 -10.39374 -9.53625 -9.28293 -8.79967 -8.25287 -5.29213 0.76455 0.77577 1.43276 1.53949 1.69453 2.60650 3.12847 3.22992 3.56197 3.85444 4.01514 4.18912 4.24552 4.25961 4.28892 4.38779 4.40872 4.44198 4.55288 4.66078 4.71183 4.77619 4.81147 4.83972 4.89726 4.94131 4.95438 5.03811 5.05111 5.09494 5.17865 5.23453 5.26523 5.30224 5.37155 5.43548 5.45322 5.53417 5.56045 5.60986 5.78051 5.84400 6.02613 6.05980 6.39117 6.52057 7.14193 7.81166 8.32547 9.03507 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.009174 C = 0.007557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.857982 B = 3051.382201 C = 3704.131469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.151 3.849 4 N -0.610 5.610 5 C -0.311 4.311 6 H 0.011 0.989 7 C -0.031 4.031 8 N -0.933 5.933 9 Si 1.069 2.931 10 H -0.257 1.257 11 H -0.315 1.315 12 H -0.291 1.291 13 C 0.154 3.846 14 C -0.059 4.059 15 H 0.073 0.927 16 C -0.026 4.026 17 C -0.106 4.106 18 C -0.118 4.118 19 C -0.145 4.145 20 C -0.128 4.128 21 C -0.130 4.130 22 C -0.089 4.089 23 C -0.135 4.135 24 C -0.142 4.142 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.026 0.974 32 H 0.247 0.753 33 H 0.060 0.940 34 H 0.029 0.971 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.050 0.950 45 H 0.069 0.931 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.732 5.983 11.624 14.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.025 3.975 4 N -0.332 5.332 5 C -0.441 4.441 6 H 0.029 0.971 7 C -0.230 4.230 8 N -0.573 5.573 9 Si 0.898 3.102 10 H -0.182 1.182 11 H -0.245 1.245 12 H -0.219 1.219 13 C 0.029 3.971 14 C -0.080 4.080 15 H 0.092 0.908 16 C -0.026 4.026 17 C -0.124 4.124 18 C -0.137 4.137 19 C -0.163 4.163 20 C -0.146 4.146 21 C -0.149 4.149 22 C -0.108 4.108 23 C -0.192 4.192 24 C -0.200 4.200 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.135 0.865 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.639 4.884 12.076 13.828 hybrid contribution -0.627 0.799 -1.481 1.796 sum -5.265 5.683 10.595 13.125 Atomic orbital electron populations 1.21649 0.94267 1.01739 1.01887 1.22011 0.96334 0.99358 1.00230 1.20948 0.83209 0.94436 0.98861 1.44168 1.01135 1.85681 1.02206 1.19461 1.05407 1.30797 0.88457 0.97102 1.26614 0.93218 1.01064 1.02077 1.70927 1.33234 1.32187 1.20987 0.83698 0.76086 0.75169 0.75249 1.18169 1.24518 1.21857 1.21293 0.94822 0.93650 0.87360 1.20900 0.97565 0.97034 0.92509 0.90825 1.19555 0.92974 0.93864 0.96224 1.20650 0.94926 0.98029 0.98827 1.21035 0.99825 0.96241 0.96558 1.21107 0.96391 0.98295 1.00555 1.21203 0.94370 1.00627 0.98424 1.21003 0.99236 0.96896 0.97716 1.21138 0.98898 0.97322 0.93489 1.21740 1.01785 0.94811 1.00889 1.21848 0.99979 0.99818 0.98312 0.92398 0.91594 0.93169 0.94930 0.93248 0.92030 0.95581 0.94378 0.92149 0.95336 0.89170 0.87421 0.85498 0.85036 0.86467 0.92664 0.92153 0.91551 0.94185 0.93083 0.91161 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.91 71.98 0.71 -2.91 16 2 C -0.14 -4.89 6.24 30.60 0.19 -4.70 16 3 C 0.15 5.75 5.69 86.38 0.49 6.24 16 4 N -0.61 -27.40 1.98 -702.01 -1.39 -28.79 16 5 C -0.31 -16.98 8.99 84.03 0.76 -16.23 16 6 H 0.01 0.70 8.06 -2.91 -0.02 0.68 16 7 C -0.03 -1.76 4.88 84.86 0.41 -1.34 16 8 N -0.93 -57.02 13.71 21.65 0.30 -56.72 16 9 Si 1.07 52.76 25.58 68.60 1.75 54.52 16 10 H -0.26 -11.51 6.41 99.48 0.64 -10.87 16 11 H -0.32 -16.07 7.11 99.48 0.71 -15.36 16 12 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 13 C 0.15 6.15 3.05 86.38 0.26 6.42 16 14 C -0.06 -2.04 1.83 -11.54 -0.02 -2.07 16 15 H 0.07 2.43 7.88 -2.38 -0.02 2.41 16 16 C -0.03 -1.02 2.54 -19.87 -0.05 -1.07 16 17 C -0.11 -4.51 8.34 22.27 0.19 -4.32 16 18 C -0.12 -4.90 10.05 22.27 0.22 -4.67 16 19 C -0.15 -5.44 10.05 22.27 0.22 -5.22 16 20 C -0.13 -4.60 10.05 22.27 0.22 -4.38 16 21 C -0.13 -4.88 9.67 22.27 0.22 -4.66 16 22 C -0.09 -2.52 2.32 -10.79 -0.03 -2.54 16 23 C -0.13 -3.32 8.94 71.98 0.64 -2.68 16 24 C -0.14 -3.27 8.66 71.98 0.62 -2.64 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 2.01 8.04 -2.39 -0.02 1.99 16 31 H 0.03 1.06 8.08 -2.39 -0.02 1.04 16 32 H 0.25 15.61 8.73 -92.71 -0.81 14.80 16 33 H 0.06 2.17 6.33 -2.39 -0.02 2.15 16 34 H 0.03 1.28 2.87 -2.38 -0.01 1.27 16 35 H 0.09 4.01 7.08 -2.91 -0.02 3.98 16 36 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 37 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 38 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 39 H 0.12 3.97 7.95 -2.91 -0.02 3.94 16 40 H 0.05 1.70 7.39 -2.39 -0.02 1.69 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.04 1.12 7.21 -2.39 -0.02 1.10 16 44 H 0.05 1.23 6.69 -2.39 -0.02 1.22 16 45 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -62.95 356.82 6.53 -56.42 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.80 Total: 21.34 kcal Atomic # 6 Polarization: -51.84 SS G_CDS: 5.07 Total: -46.76 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -1.09 Total: -85.51 kcal Atomic # 14 Polarization: 52.76 SS G_CDS: 1.75 Total: 54.52 kcal Total: -62.95 6.53 -56.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000474145764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.574 kcal (2) G-P(sol) polarization free energy of solvation -62.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds