Wall clock time and date at job start Mon Mar 30 2020 01:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99987 * 2 1 4 4 H 1.48497 * 109.47316 * 240.00312 * 3 2 1 5 5 H 1.48502 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47094 * 120.00279 * 3 2 1 7 7 C 1.37880 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99360 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47057 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.47415 * 179.97438 * 10 9 7 12 12 O 1.42105 * 109.46787 * 70.93943 * 11 10 9 13 13 C 1.76196 * 103.00451 * 179.97438 * 11 10 9 14 14 C 1.38204 * 120.00880 * 94.99941 * 13 11 10 15 15 C 1.38335 * 120.01671 * 180.02562 * 14 13 11 16 16 Cl 1.73598 * 119.98911 * 180.02562 * 15 14 13 17 17 C 1.38374 * 120.02147 * 359.97438 * 15 14 13 18 18 C 1.38172 * 120.01312 * 0.02562 * 17 15 14 19 19 C 1.38437 * 120.00609 * 275.30000 * 13 11 10 20 20 F 1.35108 * 120.01272 * 359.97433 * 19 13 11 21 21 H 0.97006 * 120.00256 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47636 * 59.99803 * 9 7 2 23 23 H 1.08996 * 109.46789 * 299.99113 * 9 7 2 24 24 H 1.09000 * 109.47414 * 59.99562 * 10 9 7 25 25 H 1.09008 * 109.47068 * 299.99710 * 10 9 7 26 26 H 1.08000 * 119.99478 * 359.97438 * 14 13 11 27 27 H 1.07999 * 119.99239 * 180.02562 * 17 15 14 28 28 H 1.08002 * 120.00305 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 16 1.3382 -5.2331 -0.0021 12 8 0.7231 -5.4243 -1.2687 13 6 2.6268 -6.4348 -0.0025 14 6 3.0611 -6.9829 1.1895 15 6 4.0731 -7.9260 1.1895 16 17 4.6177 -8.6146 2.6871 17 6 4.6508 -8.3215 -0.0041 18 6 4.2174 -7.7742 -1.1965 19 6 3.2087 -6.8255 -1.1963 20 9 2.7884 -6.2859 -2.3615 21 1 -0.4851 0.8401 0.0004 22 1 0.6246 -2.5564 -0.8919 23 1 0.6241 -2.5575 0.8881 24 1 2.8712 -3.6048 0.8890 25 1 2.8725 -3.6040 -0.8910 26 1 2.6109 -6.6743 2.1215 27 1 5.4406 -9.0581 -0.0036 28 1 4.6687 -8.0827 -2.1279 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000505842083.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:01 Heat of formation + Delta-G solvation = -95.999883 kcal Electronic energy + Delta-G solvation = -16325.797420 eV Core-core repulsion = 13214.635649 eV Total energy + Delta-G solvation = -3111.161771 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.013 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.20291 -40.09124 -37.43165 -36.85736 -35.74296 -32.89305 -32.52358 -31.29400 -27.35214 -24.69758 -23.87598 -23.08885 -19.49007 -18.78335 -18.41716 -17.87244 -17.38967 -16.96450 -16.56370 -15.98542 -15.64416 -15.53285 -15.14418 -14.63546 -14.40294 -14.27966 -13.97599 -13.56889 -13.18322 -12.86335 -12.74912 -12.66280 -12.39304 -12.13313 -11.99537 -11.86656 -11.53507 -11.00004 -10.59224 -10.50426 -9.75847 -9.41932 -8.21861 -6.34580 -0.46770 -0.10961 0.73103 1.06145 1.39364 1.42292 1.50442 1.71526 2.22882 2.39886 2.84431 3.07974 3.10443 3.57910 3.87228 4.07610 4.22944 4.27845 4.44931 4.60225 4.75781 4.84996 4.93136 4.97915 5.40566 5.47132 5.50512 5.75771 6.17748 6.78803 7.34413 8.88794 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.023782 B = 0.004440 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.067386 B = 6304.099078 C = 6778.382357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.038 3.962 10 C -0.425 4.425 11 S 1.385 4.615 12 O -0.908 6.908 13 C -0.497 4.497 14 C 0.001 3.999 15 C -0.067 4.067 16 Cl -0.043 7.043 17 C -0.040 4.040 18 C -0.159 4.159 19 C 0.122 3.878 20 F -0.147 7.147 21 H 0.266 0.734 22 H -0.023 1.023 23 H 0.034 0.966 24 H 0.137 0.863 25 H 0.050 0.950 26 H 0.193 0.807 27 H 0.179 0.821 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.129 -19.198 7.975 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.001 4.001 10 C -0.562 4.562 11 S 1.584 4.416 12 O -0.904 6.904 13 C -0.593 4.593 14 C -0.018 4.018 15 C -0.095 4.095 16 Cl -0.014 7.014 17 C -0.059 4.059 18 C -0.179 4.179 19 C 0.101 3.899 20 F -0.125 7.125 21 H 0.075 0.925 22 H -0.004 1.004 23 H 0.052 0.948 24 H 0.155 0.845 25 H 0.069 0.931 26 H 0.210 0.790 27 H 0.196 0.804 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.035 -19.320 8.039 22.793 hybrid contribution 1.485 1.293 -2.471 3.160 sum 10.520 -18.027 5.567 21.602 Atomic orbital electron populations 1.70069 1.07702 1.28115 1.51087 1.25986 0.95842 1.03332 0.94572 0.85497 0.78318 0.78042 0.79183 1.20127 1.20599 1.18224 1.21585 0.93532 0.91904 1.51263 0.92137 1.18651 0.93534 0.91887 0.95998 1.27681 1.08971 1.12908 1.06624 1.68761 0.83561 0.82335 1.06923 1.93008 1.67077 1.83183 1.47134 1.28099 1.17794 1.17399 0.96058 1.21061 0.92244 0.91051 0.97464 1.21157 0.99598 0.99966 0.88746 1.98398 1.88910 1.83330 1.30796 1.21411 0.98051 0.97489 0.88917 1.21432 0.97448 0.97509 1.01474 1.18224 0.95409 0.95077 0.81150 1.91583 1.89132 1.84619 1.47182 0.92495 1.00430 0.94776 0.84456 0.93074 0.78982 0.80386 0.81873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.22 15 2 C 0.00 0.06 5.46 84.66 0.46 0.53 15 3 Si 0.97 44.25 29.54 68.60 2.03 46.27 15 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 7 C -0.54 -31.10 9.11 25.60 0.23 -30.87 15 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 15 9 C 0.04 1.98 4.98 29.85 0.15 2.12 15 10 C -0.42 -17.03 5.82 71.98 0.42 -16.61 15 11 S 1.39 45.04 13.45 -56.49 -0.76 44.28 15 12 O -0.91 -42.27 16.00 -148.98 -2.38 -44.65 15 13 C -0.50 -13.42 5.59 22.31 0.12 -13.30 15 14 C 0.00 0.02 9.53 22.28 0.21 0.23 15 15 C -0.07 -1.11 6.32 22.33 0.14 -0.97 15 16 Cl -0.04 -0.59 28.95 -2.72 -0.08 -0.67 15 17 C -0.04 -0.63 9.83 22.29 0.22 -0.42 15 18 C -0.16 -3.39 10.03 22.31 0.22 -3.16 15 19 C 0.12 3.72 7.16 22.37 0.16 3.88 15 20 F -0.15 -5.83 15.32 44.97 0.69 -5.14 15 21 H 0.27 15.17 8.31 -92.70 -0.77 14.39 15 22 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 15 23 H 0.03 1.72 8.14 -2.39 -0.02 1.70 15 24 H 0.14 4.50 8.14 -2.39 -0.02 4.48 15 25 H 0.05 2.27 8.14 -2.39 -0.02 2.25 15 26 H 0.19 1.99 8.06 -2.91 -0.02 1.97 15 27 H 0.18 1.55 8.06 -2.91 -0.02 1.53 15 28 H 0.16 2.73 8.06 -2.91 -0.02 2.71 15 Total: -1.00 -81.00 284.50 3.30 -77.70 By element: Atomic # 1 Polarization: -4.18 SS G_CDS: 1.18 Total: -3.00 kcal Atomic # 6 Polarization: -60.91 SS G_CDS: 2.34 Total: -58.56 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.28 Total: -56.22 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -2.38 Total: -44.65 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.69 Total: -5.14 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 45.04 SS G_CDS: -0.76 Total: 44.28 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -81.00 3.30 -77.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505842083.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.302 kcal (2) G-P(sol) polarization free energy of solvation -81.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds