Wall clock time and date at job start Mon Mar 30 2020 01:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47198 * 2 1 4 4 N 1.46496 * 109.47221 * 180.02562 * 3 2 1 5 5 C 1.36940 * 120.00078 * 269.49921 * 4 3 2 6 6 H 1.08002 * 119.99476 * 325.91160 * 5 4 3 7 7 C 1.38808 * 119.99919 * 145.91755 * 5 4 3 8 8 N 1.31621 * 120.00398 * 336.75413 * 7 5 4 9 9 Si 1.86803 * 119.99759 * 156.75586 * 7 5 4 10 10 H 1.48497 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47079 * 120.00049 * 9 7 5 12 12 H 1.48500 * 109.46707 * 239.99740 * 9 7 5 13 13 C 1.46504 * 119.99880 * 89.49591 * 4 3 2 14 14 C 1.50702 * 109.46738 * 90.00235 * 13 4 3 15 15 C 1.38231 * 120.00161 * 90.00079 * 14 13 4 16 16 C 1.38238 * 119.99906 * 180.02562 * 15 14 13 17 17 C 1.38237 * 119.99831 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99771 * 179.97438 * 17 16 15 19 19 C 1.52998 * 109.47566 * 89.99338 * 18 17 16 20 20 C 1.53002 * 109.47102 * 295.00025 * 19 18 17 21 21 C 1.52999 * 109.47030 * 175.00049 * 19 18 17 22 22 C 1.38234 * 120.00389 * 0.24571 * 17 16 15 23 23 C 1.38236 * 119.99801 * 359.49938 * 22 17 16 24 24 H 1.09006 * 109.46958 * 299.99662 * 1 2 3 25 25 H 1.08992 * 109.47377 * 60.00045 * 1 2 3 26 26 H 1.09002 * 109.46695 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46958 * 240.00337 * 2 1 3 28 28 H 1.09004 * 109.47651 * 120.00250 * 2 1 3 29 29 H 1.08997 * 109.46701 * 60.00110 * 3 2 1 30 30 H 1.08995 * 109.46758 * 300.00727 * 3 2 1 31 31 H 0.96994 * 120.00459 * 180.02562 * 8 7 5 32 32 H 1.08993 * 109.47092 * 330.00017 * 13 4 3 33 33 H 1.08994 * 109.47090 * 209.99658 * 13 4 3 34 34 H 1.07988 * 120.00138 * 359.97438 * 15 14 13 35 35 H 1.08005 * 120.00214 * 179.97438 * 16 15 14 36 36 H 1.09008 * 109.46924 * 329.99137 * 18 17 16 37 37 H 1.09000 * 109.46775 * 210.00004 * 18 17 16 38 38 H 1.08996 * 109.46637 * 54.99792 * 19 18 17 39 39 H 1.08999 * 109.47209 * 59.99837 * 20 19 18 40 40 H 1.08994 * 109.47309 * 179.97438 * 20 19 18 41 41 H 1.09004 * 109.47196 * 300.00047 * 20 19 18 42 42 H 1.09005 * 109.47009 * 180.02562 * 21 19 18 43 43 H 1.09002 * 109.46956 * 299.99959 * 21 19 18 44 44 H 1.08995 * 109.47102 * 60.00252 * 21 19 18 45 45 H 1.08000 * 120.00048 * 179.73074 * 22 17 16 46 46 H 1.07994 * 120.00287 * 180.22463 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.4527 1.1850 6 1 3.7897 1.9843 2.0355 7 6 5.3995 0.7800 1.2935 8 7 5.6763 -0.2125 0.4745 9 14 6.6341 1.2833 2.6019 10 1 6.0874 2.4183 3.3880 11 1 6.8937 0.1341 3.5057 12 1 7.9031 1.6980 1.9515 13 6 4.2369 1.4316 -1.2697 14 6 4.4879 2.8486 -1.7170 15 6 5.6400 3.5037 -1.3241 16 6 5.8699 4.8037 -1.7340 17 6 4.9474 5.4488 -2.5364 18 6 5.1978 6.8663 -2.9827 19 6 5.9617 6.8562 -4.3083 20 6 7.3493 6.2487 -4.0926 21 6 6.1069 8.2893 -4.8241 22 6 3.7926 4.7957 -2.9247 23 6 3.5652 3.4939 -2.5191 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 6.5212 -0.6828 0.5505 32 1 3.6476 0.9112 -2.0245 33 1 5.1894 0.9190 -1.1353 34 1 6.3600 3.0002 -0.6962 35 1 6.7699 5.3157 -1.4267 36 1 5.7873 7.3863 -2.2275 37 1 4.2451 7.3787 -3.1162 38 1 5.4140 6.2609 -5.0387 39 1 7.2459 5.2278 -3.7251 40 1 7.8934 6.2411 -5.0370 41 1 7.8971 6.8441 -3.3621 42 1 6.6508 8.2821 -5.7687 43 1 5.1184 8.7221 -4.9777 44 1 6.6547 8.8846 -4.0936 45 1 3.0699 5.3012 -3.5479 46 1 2.6648 2.9823 -2.8254 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000506897420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:15 Heat of formation + Delta-G solvation = 9.094497 kcal Electronic energy + Delta-G solvation = -21581.453275 eV Core-core repulsion = 18663.206968 eV Total energy + Delta-G solvation = -2918.246307 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.05400 -36.61487 -35.50954 -32.93633 -31.61218 -30.30457 -30.14768 -27.30331 -27.12591 -25.53303 -24.38566 -22.00282 -21.95499 -20.58753 -19.89231 -19.57260 -16.81184 -15.70835 -15.04423 -14.90706 -14.47300 -14.23664 -14.19218 -14.15700 -13.75628 -13.25827 -13.16781 -12.76285 -12.70692 -12.26287 -12.11204 -11.94325 -11.69375 -11.55709 -11.31111 -11.12429 -10.98015 -10.84322 -10.72775 -10.66044 -10.56483 -10.42029 -10.20371 -10.17116 -9.88366 -9.84051 -9.64717 -8.51158 -8.21483 -7.77454 -6.62598 -5.80348 -3.31557 2.05379 2.10667 3.33912 3.43767 3.47217 4.38164 4.52082 4.89086 4.93242 5.01396 5.30844 5.39609 5.47638 5.57454 5.58854 5.60562 5.70087 5.71789 5.77162 5.83985 5.85431 5.92802 5.96701 5.98601 6.12526 6.16337 6.24969 6.28698 6.32276 6.36461 6.42323 6.51688 6.58224 6.63914 6.69897 6.81159 6.85893 7.07643 7.16562 7.22019 7.28290 7.48423 7.70454 7.79811 7.82696 8.49707 9.16817 9.81072 10.37674 11.20018 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.005158 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.211806 B = 5426.699260 C = 6741.341785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.150 3.850 4 N -0.576 5.576 5 C -0.249 4.249 6 H 0.061 0.939 7 C 0.010 3.990 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.287 1.287 13 C 0.170 3.830 14 C -0.070 4.070 15 C -0.098 4.098 16 C -0.121 4.121 17 C -0.105 4.105 18 C -0.069 4.069 19 C -0.091 4.091 20 C -0.150 4.150 21 C -0.147 4.147 22 C -0.125 4.125 23 C -0.122 4.122 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.254 0.746 32 H 0.031 0.969 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.107 0.893 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 10.566 -8.622 13.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.023 3.977 4 N -0.295 5.295 5 C -0.378 4.378 6 H 0.079 0.921 7 C -0.190 4.190 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.044 3.956 14 C -0.073 4.073 15 C -0.116 4.116 16 C -0.139 4.139 17 C -0.106 4.106 18 C -0.107 4.107 19 C -0.109 4.109 20 C -0.207 4.207 21 C -0.204 4.204 22 C -0.143 4.143 23 C -0.141 4.141 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.125 0.875 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.573 10.438 -8.595 13.613 hybrid contribution 0.670 0.195 0.733 1.012 sum -0.904 10.632 -7.863 13.255 Atomic orbital electron populations 1.21756 0.97820 1.00283 1.00657 1.22087 0.92985 1.00852 1.02071 1.20923 0.85158 0.93367 0.98212 1.43798 0.99337 1.84531 1.01826 1.19097 1.02960 1.25306 0.90484 0.92146 1.25011 1.00631 0.95255 0.98080 1.69986 1.23652 1.19307 1.39823 0.86443 0.81790 0.78324 0.81655 1.20082 1.21685 1.21347 1.20073 1.00713 0.88604 0.86201 1.21218 0.92608 1.00294 0.93228 1.21082 0.97780 0.94156 0.98629 1.20936 0.98695 0.95309 0.98937 1.19565 0.95427 0.95702 0.99887 1.20574 1.00009 0.93563 0.96509 1.21076 0.96746 0.96173 0.96921 1.21911 0.95982 1.01824 1.01009 1.21858 1.01380 0.96458 1.00698 1.20817 0.97046 0.95176 1.01271 1.21005 0.99030 0.94621 0.99401 0.93450 0.93699 0.93892 0.93069 0.91891 0.94097 0.94924 0.93586 0.95052 0.87545 0.86457 0.87365 0.91660 0.91746 0.91270 0.91662 0.93288 0.93010 0.92926 0.92904 0.92831 0.87536 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 37.16 0.37 -1.93 16 2 C -0.14 -2.76 6.26 -26.73 -0.17 -2.93 16 3 C 0.15 3.16 5.67 -4.04 -0.02 3.14 16 4 N -0.58 -14.07 2.43 -174.61 -0.43 -14.50 16 5 C -0.25 -6.67 9.48 -15.06 -0.14 -6.81 16 6 H 0.06 1.65 7.93 -52.49 -0.42 1.24 16 7 C 0.01 0.27 4.94 -17.43 -0.09 0.18 16 8 N -0.88 -24.69 11.34 55.49 0.63 -24.07 16 9 Si 0.89 21.26 29.61 -169.99 -5.03 16.22 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.17 3.95 5.42 -5.19 -0.03 3.93 16 14 C -0.07 -1.47 5.46 -104.62 -0.57 -2.04 16 15 C -0.10 -1.99 9.70 -39.58 -0.38 -2.37 16 16 C -0.12 -2.09 7.96 -39.58 -0.32 -2.40 16 17 C -0.11 -1.65 4.71 -104.62 -0.49 -2.14 16 18 C -0.07 -0.86 4.84 -27.88 -0.13 -0.99 16 19 C -0.09 -1.01 2.91 -90.62 -0.26 -1.27 16 20 C -0.15 -1.71 8.76 37.16 0.33 -1.39 16 21 C -0.15 -1.34 9.19 37.16 0.34 -1.00 16 22 C -0.12 -2.02 9.70 -39.58 -0.38 -2.41 16 23 C -0.12 -2.22 9.70 -39.58 -0.38 -2.61 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 30 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.03 0.70 8.02 -51.93 -0.42 0.28 16 33 H 0.11 2.79 5.28 -51.93 -0.27 2.51 16 34 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 35 H 0.11 1.68 8.04 -52.48 -0.42 1.26 16 36 H 0.06 0.79 8.09 -51.92 -0.42 0.37 16 37 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.86 6.27 -51.93 -0.33 0.54 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 46 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -27.53 369.20 -10.19 -37.72 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.58 Total: 2.10 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -2.34 Total: -23.04 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.20 Total: -38.56 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.53 -10.19 -37.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000506897420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.817 kcal (2) G-P(sol) polarization free energy of solvation -27.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds