Wall clock time and date at job start Mon Mar 30 2020 01:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47198 * 2 1 4 4 N 1.46496 * 109.47221 * 180.02562 * 3 2 1 5 5 C 1.36940 * 120.00078 * 269.49921 * 4 3 2 6 6 H 1.08002 * 119.99476 * 325.91160 * 5 4 3 7 7 C 1.38808 * 119.99919 * 145.91755 * 5 4 3 8 8 N 1.31621 * 120.00398 * 336.75413 * 7 5 4 9 9 Si 1.86803 * 119.99759 * 156.75586 * 7 5 4 10 10 H 1.48497 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47079 * 120.00049 * 9 7 5 12 12 H 1.48500 * 109.46707 * 239.99740 * 9 7 5 13 13 C 1.46504 * 119.99880 * 89.49591 * 4 3 2 14 14 C 1.50702 * 109.46738 * 90.00235 * 13 4 3 15 15 C 1.38231 * 120.00161 * 90.00079 * 14 13 4 16 16 C 1.38238 * 119.99906 * 180.02562 * 15 14 13 17 17 C 1.38237 * 119.99831 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99771 * 179.97438 * 17 16 15 19 19 C 1.52998 * 109.47566 * 89.99338 * 18 17 16 20 20 C 1.53002 * 109.47102 * 295.00025 * 19 18 17 21 21 C 1.52999 * 109.47030 * 175.00049 * 19 18 17 22 22 C 1.38234 * 120.00389 * 0.24571 * 17 16 15 23 23 C 1.38236 * 119.99801 * 359.49938 * 22 17 16 24 24 H 1.09006 * 109.46958 * 299.99662 * 1 2 3 25 25 H 1.08992 * 109.47377 * 60.00045 * 1 2 3 26 26 H 1.09002 * 109.46695 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46958 * 240.00337 * 2 1 3 28 28 H 1.09004 * 109.47651 * 120.00250 * 2 1 3 29 29 H 1.08997 * 109.46701 * 60.00110 * 3 2 1 30 30 H 1.08995 * 109.46758 * 300.00727 * 3 2 1 31 31 H 0.96994 * 120.00459 * 180.02562 * 8 7 5 32 32 H 1.08993 * 109.47092 * 330.00017 * 13 4 3 33 33 H 1.08994 * 109.47090 * 209.99658 * 13 4 3 34 34 H 1.07988 * 120.00138 * 359.97438 * 15 14 13 35 35 H 1.08005 * 120.00214 * 179.97438 * 16 15 14 36 36 H 1.09008 * 109.46924 * 329.99137 * 18 17 16 37 37 H 1.09000 * 109.46775 * 210.00004 * 18 17 16 38 38 H 1.08996 * 109.46637 * 54.99792 * 19 18 17 39 39 H 1.08999 * 109.47209 * 59.99837 * 20 19 18 40 40 H 1.08994 * 109.47309 * 179.97438 * 20 19 18 41 41 H 1.09004 * 109.47196 * 300.00047 * 20 19 18 42 42 H 1.09005 * 109.47009 * 180.02562 * 21 19 18 43 43 H 1.09002 * 109.46956 * 299.99959 * 21 19 18 44 44 H 1.08995 * 109.47102 * 60.00252 * 21 19 18 45 45 H 1.08000 * 120.00048 * 179.73074 * 22 17 16 46 46 H 1.07994 * 120.00287 * 180.22463 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.4527 1.1850 6 1 3.7897 1.9843 2.0355 7 6 5.3995 0.7800 1.2935 8 7 5.6763 -0.2125 0.4745 9 14 6.6341 1.2833 2.6019 10 1 6.0874 2.4183 3.3880 11 1 6.8937 0.1341 3.5057 12 1 7.9031 1.6980 1.9515 13 6 4.2369 1.4316 -1.2697 14 6 4.4879 2.8486 -1.7170 15 6 5.6400 3.5037 -1.3241 16 6 5.8699 4.8037 -1.7340 17 6 4.9474 5.4488 -2.5364 18 6 5.1978 6.8663 -2.9827 19 6 5.9617 6.8562 -4.3083 20 6 7.3493 6.2487 -4.0926 21 6 6.1069 8.2893 -4.8241 22 6 3.7926 4.7957 -2.9247 23 6 3.5652 3.4939 -2.5191 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 6.5212 -0.6828 0.5505 32 1 3.6476 0.9112 -2.0245 33 1 5.1894 0.9190 -1.1353 34 1 6.3600 3.0002 -0.6962 35 1 6.7699 5.3157 -1.4267 36 1 5.7873 7.3863 -2.2275 37 1 4.2451 7.3787 -3.1162 38 1 5.4140 6.2609 -5.0387 39 1 7.2459 5.2278 -3.7251 40 1 7.8934 6.2411 -5.0370 41 1 7.8971 6.8441 -3.3621 42 1 6.6508 8.2821 -5.7687 43 1 5.1184 8.7221 -4.9777 44 1 6.6547 8.8846 -4.0936 45 1 3.0699 5.3012 -3.5479 46 1 2.6648 2.9823 -2.8254 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000506897420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:15 Heat of formation + Delta-G solvation = -1.275522 kcal Electronic energy + Delta-G solvation = -21581.902952 eV Core-core repulsion = 18663.206968 eV Total energy + Delta-G solvation = -2918.695985 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43022 -38.12403 -36.79761 -34.63675 -33.23378 -31.82779 -31.65220 -28.68881 -27.94754 -27.33299 -25.83422 -23.63062 -23.40710 -21.99821 -21.39751 -20.73316 -18.75541 -17.06824 -16.72294 -16.32769 -16.02549 -15.81642 -15.65000 -15.27220 -15.10524 -14.90052 -14.48897 -14.14890 -14.03523 -13.58978 -13.33755 -13.06482 -13.04510 -12.90432 -12.75190 -12.73855 -12.53880 -12.35016 -12.19970 -12.00842 -11.94097 -11.80473 -11.63822 -11.57769 -11.44434 -11.39228 -11.32549 -10.54372 -9.63827 -9.20806 -8.60984 -7.84099 -5.39296 0.63786 0.67372 1.39751 1.44245 1.53343 2.49106 2.98115 3.24717 3.85195 3.92564 3.97866 4.13938 4.18464 4.26252 4.29562 4.35154 4.44349 4.48226 4.59516 4.68047 4.76817 4.81518 4.82318 4.84550 4.90693 4.95622 4.98861 5.01122 5.11417 5.13126 5.17333 5.26249 5.27382 5.34376 5.42279 5.45252 5.48863 5.53627 5.59124 5.60836 5.70901 5.80793 5.85575 6.08085 6.31834 6.47710 7.15079 7.86064 8.37334 9.12871 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.005158 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.211806 B = 5426.699260 C = 6741.341785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.131 4.131 3 C 0.148 3.852 4 N -0.591 5.591 5 C -0.256 4.256 6 H 0.050 0.950 7 C -0.029 4.029 8 N -0.912 5.912 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.287 1.287 13 C 0.178 3.822 14 C -0.094 4.094 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.093 4.093 18 C -0.067 4.067 19 C -0.087 4.087 20 C -0.151 4.151 21 C -0.142 4.142 22 C -0.120 4.120 23 C -0.124 4.124 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.251 0.749 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.141 0.859 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.854 13.293 -9.887 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C 0.022 3.978 4 N -0.310 5.310 5 C -0.387 4.387 6 H 0.068 0.932 7 C -0.227 4.227 8 N -0.557 5.557 9 Si 0.770 3.230 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.214 1.214 13 C 0.052 3.948 14 C -0.096 4.096 15 C -0.140 4.140 16 C -0.138 4.138 17 C -0.094 4.094 18 C -0.104 4.104 19 C -0.106 4.106 20 C -0.209 4.209 21 C -0.200 4.200 22 C -0.137 4.137 23 C -0.143 4.143 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.141 0.859 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.159 0.841 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.740 13.179 -9.868 16.690 hybrid contribution 1.015 -0.590 1.049 1.575 sum -1.725 12.589 -8.818 15.467 Atomic orbital electron populations 1.21657 0.94064 1.01707 1.02012 1.21931 0.96206 0.99231 0.99731 1.21033 0.83491 0.94337 0.98902 1.43990 1.00682 1.84891 1.01473 1.19199 1.03558 1.24729 0.91174 0.93186 1.25549 1.01876 0.95325 0.99923 1.70100 1.23760 1.20380 1.41443 0.85609 0.79844 0.77881 0.79636 1.19624 1.21707 1.21381 1.19824 0.98849 0.90280 0.85850 1.20941 0.94066 0.99091 0.95529 1.20963 0.97620 0.95726 0.99712 1.21080 0.99742 0.94075 0.98930 1.19976 0.94308 0.97223 0.97872 1.20653 1.01363 0.91119 0.97296 1.21046 0.95956 0.97556 0.96035 1.21920 0.96770 1.00534 1.01645 1.21814 1.02220 0.94852 1.01074 1.21185 0.97658 0.94240 1.00653 1.21123 0.98748 0.95634 0.98816 0.92562 0.91820 0.92490 0.94479 0.95151 0.94343 0.93026 0.93968 0.95020 0.90954 0.89487 0.85863 0.90980 0.89931 0.91682 0.93990 0.92304 0.92420 0.92199 0.91928 0.92371 0.84118 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.91 71.98 0.71 -3.29 16 2 C -0.13 -5.21 6.26 30.60 0.19 -5.02 16 3 C 0.15 6.27 5.67 86.38 0.49 6.76 16 4 N -0.59 -29.78 2.43 -706.36 -1.72 -31.50 16 5 C -0.26 -14.24 9.48 84.03 0.80 -13.44 16 6 H 0.05 2.83 7.93 -2.91 -0.02 2.81 16 7 C -0.03 -1.64 4.94 84.86 0.42 -1.22 16 8 N -0.91 -53.34 11.34 21.65 0.25 -53.10 16 9 Si 0.94 45.18 29.61 68.60 2.03 47.21 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 12 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 13 C 0.18 8.62 5.42 85.63 0.46 9.09 16 14 C -0.09 -3.98 5.46 -19.86 -0.11 -4.09 16 15 C -0.12 -5.10 9.70 22.27 0.22 -4.88 16 16 C -0.12 -4.09 7.96 22.27 0.18 -3.91 16 17 C -0.09 -2.70 4.71 -19.86 -0.09 -2.79 16 18 C -0.07 -1.42 4.84 29.85 0.14 -1.27 16 19 C -0.09 -1.65 2.91 -10.79 -0.03 -1.69 16 20 C -0.15 -3.14 8.76 71.98 0.63 -2.51 16 21 C -0.14 -2.06 9.19 71.98 0.66 -1.40 16 22 C -0.12 -3.52 9.70 22.27 0.22 -3.31 16 23 C -0.12 -4.39 9.70 22.27 0.22 -4.17 16 24 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 27 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 30 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 31 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.03 1.47 8.02 -2.39 -0.02 1.45 16 33 H 0.07 4.04 5.28 -2.39 -0.01 4.03 16 34 H 0.09 4.10 8.06 -2.92 -0.02 4.08 16 35 H 0.12 3.72 8.04 -2.91 -0.02 3.70 16 36 H 0.07 1.47 8.09 -2.38 -0.02 1.45 16 37 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.04 1.06 6.27 -2.39 -0.01 1.04 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 46 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -61.77 369.20 6.56 -55.22 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.90 Total: 19.31 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 5.10 Total: -37.14 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -1.47 Total: -84.60 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -61.77 6.56 -55.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000506897420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.941 kcal (2) G-P(sol) polarization free energy of solvation -61.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds