Wall clock time and date at job start Mon Mar 30 2020 01:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.46916 * 2 1 4 4 C 1.46894 * 111.00077 * 68.00181 * 3 2 1 5 5 C 1.50706 * 109.47262 * 70.05098 * 4 3 2 6 6 C 1.38632 * 119.74582 * 265.14556 * 5 4 3 7 7 C 1.37624 * 120.24373 * 179.72057 * 6 5 4 8 8 C 1.40716 * 119.74230 * 0.56538 * 7 6 5 9 9 C 1.41399 * 120.24069 * 179.68031 * 8 7 6 10 10 H 1.08008 * 119.99971 * 161.21436 * 9 8 7 11 11 C 1.39940 * 120.00449 * 341.21581 * 9 8 7 12 12 N 1.30829 * 119.99881 * 326.77123 * 11 9 8 13 13 Si 1.86805 * 120.00337 * 146.76895 * 11 9 8 14 14 H 1.48501 * 109.46785 * 94.99250 * 13 11 9 15 15 H 1.48497 * 109.47280 * 214.99079 * 13 11 9 16 16 H 1.48496 * 109.46588 * 334.99645 * 13 11 9 17 17 C 1.40714 * 119.51292 * 359.71369 * 8 7 6 18 18 C 1.37613 * 119.74558 * 359.97438 * 17 8 7 19 19 C 1.46902 * 111.00437 * 304.04525 * 3 2 1 20 20 H 1.09009 * 109.46590 * 65.09146 * 19 3 2 21 21 C 1.52996 * 109.47309 * 185.09111 * 19 3 2 22 22 C 1.53003 * 109.47186 * 305.09694 * 19 3 2 23 23 C 1.52998 * 109.47102 * 180.02562 * 22 19 3 24 24 C 1.52995 * 109.46821 * 300.06596 * 22 19 3 25 25 H 1.09003 * 109.47425 * 64.98054 * 1 2 3 26 26 H 1.09002 * 109.46842 * 184.97858 * 1 2 3 27 27 H 1.08999 * 109.46988 * 304.97585 * 1 2 3 28 28 H 1.09002 * 109.46898 * 240.00407 * 2 1 3 29 29 H 1.09002 * 109.47253 * 120.00010 * 2 1 3 30 30 H 1.08997 * 109.47513 * 190.05214 * 4 3 2 31 31 H 1.09000 * 109.47008 * 310.05122 * 4 3 2 32 32 H 1.07999 * 119.88226 * 359.97438 * 6 5 4 33 33 H 1.07995 * 120.12673 * 180.27904 * 7 6 5 34 34 H 0.96996 * 120.00012 * 179.97438 * 12 11 9 35 35 H 1.08004 * 120.12413 * 179.97438 * 17 8 7 36 36 H 1.07998 * 119.87518 * 180.02562 * 18 17 8 37 37 H 1.09004 * 109.46988 * 60.00804 * 21 19 3 38 38 H 1.08999 * 109.47560 * 300.00200 * 21 19 3 39 39 H 1.09004 * 109.47194 * 179.97438 * 21 19 3 40 40 H 1.09002 * 109.47080 * 60.06512 * 22 19 3 41 41 H 1.09000 * 109.47037 * 306.14337 * 23 22 19 42 42 H 1.08995 * 109.47188 * 66.14598 * 23 22 19 43 43 H 1.09000 * 109.47175 * 186.14541 * 23 22 19 44 44 H 1.09010 * 109.47419 * 60.00185 * 24 22 19 45 45 H 1.08999 * 109.46946 * 179.97438 * 24 22 19 46 46 H 1.08995 * 109.47222 * 300.00236 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7107 2.0525 1.2715 5 6 2.5605 1.4631 2.3678 6 6 2.0541 0.4418 3.1568 7 6 2.8232 -0.1078 4.1569 8 6 4.1237 0.3788 4.3849 9 6 4.9206 -0.1736 5.4140 10 1 5.9912 -0.0311 5.4035 11 6 4.3223 -0.9050 6.4462 12 7 3.1257 -0.5842 6.8667 13 14 5.2320 -2.3394 7.2236 14 1 5.9405 -1.8738 8.4428 15 1 4.2608 -3.4012 7.5906 16 1 6.2179 -2.8833 6.2555 17 6 4.6251 1.4197 3.5816 18 6 3.8406 1.9499 2.5829 19 6 1.4712 2.1373 -1.1363 20 1 0.3908 2.2288 -1.0240 21 6 2.0997 3.5317 -1.1758 22 6 1.7879 1.3980 -2.4380 23 6 1.2173 2.1819 -3.6215 24 6 3.3042 1.2681 -2.5947 25 1 -0.3634 0.4346 -0.9312 26 1 -0.3633 -1.0238 0.0892 27 1 -0.3633 0.5891 0.8421 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.9205 3.1184 1.1827 31 1 0.6572 1.9083 1.5111 32 1 1.0538 0.0734 2.9833 33 1 2.4285 -0.9064 4.7675 34 1 2.7108 -1.0913 7.5819 35 1 5.6217 1.8010 3.7481 36 1 4.2234 2.7485 1.9649 37 1 3.1801 3.4402 -1.2882 38 1 1.8741 4.0584 -0.2486 39 1 1.6931 4.0898 -2.0193 40 1 1.3390 0.4051 -2.4103 41 1 0.1561 2.3683 -3.4561 42 1 1.7428 3.1322 -3.7152 43 1 1.3463 1.6037 -4.5364 44 1 3.7102 0.7092 -1.7514 45 1 3.5298 0.7410 -3.5217 46 1 3.7530 2.2610 -2.6223 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544059574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:54 Heat of formation + Delta-G solvation = 5.354588 kcal Electronic energy + Delta-G solvation = -21936.950985 eV Core-core repulsion = 19018.542503 eV Total energy + Delta-G solvation = -2918.408482 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.27660 -37.32552 -34.83758 -33.55331 -31.09416 -30.23998 -29.17373 -28.03359 -27.16012 -26.28377 -23.98497 -23.37024 -21.39721 -20.81054 -19.54668 -18.16099 -17.27112 -16.10328 -15.56342 -15.25800 -14.98127 -14.40478 -14.03273 -13.62711 -13.50346 -13.14009 -12.95090 -12.60833 -12.46728 -12.31631 -12.12431 -11.89274 -11.82277 -11.60768 -11.53264 -11.31943 -11.15504 -10.97175 -10.92685 -10.85401 -10.59424 -10.47256 -10.34124 -10.21783 -10.01645 -9.49776 -9.33710 -8.92020 -7.75636 -7.38073 -7.31508 -6.88613 -4.25893 2.77806 3.06703 3.09476 3.15119 3.25433 3.92263 4.29648 4.64615 4.86377 4.94257 5.22435 5.36573 5.44161 5.51153 5.56773 5.60540 5.67079 5.74057 5.75806 5.78735 5.89715 5.94671 5.97323 6.00978 6.11002 6.14341 6.24437 6.28989 6.32367 6.43828 6.47499 6.49249 6.56679 6.60246 6.63811 7.00165 7.06878 7.29316 7.43236 7.59435 7.63207 7.67682 7.97951 8.09063 8.23294 8.34391 8.66287 8.91998 9.04274 10.06839 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.031457 B = 0.003913 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.902235 B = 7153.126542 C = 7311.201842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.047 3.953 3 N -0.520 5.520 4 C 0.113 3.887 5 C -0.212 4.212 6 C -0.086 4.086 7 C -0.184 4.184 8 C 0.116 3.884 9 C -0.471 4.471 10 H 0.079 0.921 11 C 0.090 3.910 12 N -0.770 5.770 13 Si 0.893 3.107 14 H -0.270 1.270 15 H -0.275 1.275 16 H -0.258 1.258 17 C -0.236 4.236 18 C -0.061 4.061 19 C 0.082 3.918 20 H 0.034 0.966 21 C -0.149 4.149 22 C -0.091 4.091 23 C -0.146 4.146 24 C -0.139 4.139 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.282 0.718 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.040 0.960 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 2.336 -13.510 14.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.081 4.081 3 N -0.243 5.243 4 C -0.013 4.013 5 C -0.214 4.214 6 C -0.105 4.105 7 C -0.204 4.204 8 C 0.114 3.886 9 C -0.499 4.499 10 H 0.097 0.903 11 C -0.132 4.132 12 N -0.393 5.393 13 Si 0.716 3.284 14 H -0.195 1.195 15 H -0.199 1.199 16 H -0.181 1.181 17 C -0.256 4.256 18 C -0.080 4.080 19 C -0.026 4.026 20 H 0.052 0.948 21 C -0.207 4.207 22 C -0.110 4.110 23 C -0.204 4.204 24 C -0.196 4.196 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.183 2.305 -13.385 14.212 hybrid contribution -0.667 -0.687 0.617 1.140 sum -4.850 1.618 -12.768 13.754 Atomic orbital electron populations 1.22421 0.99260 1.01777 1.01404 1.22154 0.91945 0.91030 1.02942 1.62376 1.58367 1.01623 1.01973 1.20831 0.95907 0.97172 0.87396 1.18765 0.96495 1.04712 1.01433 1.20447 0.97201 0.96579 0.96260 1.21028 0.96225 1.03115 0.99998 1.17527 0.91610 0.88634 0.90878 1.19535 0.95295 1.29277 1.05814 0.90270 1.25918 0.94533 0.97064 0.95646 1.69950 1.15195 1.33599 1.20523 0.86561 0.80740 0.81450 0.79611 1.19526 1.19947 1.18129 1.20864 0.99965 1.02101 1.02642 1.20281 0.93502 0.98012 0.96216 1.21613 0.96169 0.93830 0.91010 0.94771 1.21994 1.02032 0.95532 1.01092 1.21166 0.97186 0.98936 0.93665 1.21882 1.00421 1.00384 0.97724 1.21769 0.94856 1.01843 1.01182 0.93114 0.92706 0.92457 0.91419 0.89629 0.91602 0.95696 0.90144 0.87841 0.90737 0.89350 0.89703 0.91505 0.92613 0.92766 0.91363 0.93193 0.92468 0.93020 0.91093 0.94084 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 9.03 37.16 0.34 -2.22 16 2 C 0.05 0.72 5.30 -3.83 -0.02 0.70 16 3 N -0.52 -8.12 3.77 -228.08 -0.86 -8.98 16 4 C 0.11 1.99 4.85 -4.98 -0.02 1.97 16 5 C -0.21 -4.58 4.91 -104.33 -0.51 -5.09 16 6 C -0.09 -1.98 8.17 -39.66 -0.32 -2.31 16 7 C -0.18 -4.78 8.81 -38.87 -0.34 -5.12 16 8 C 0.12 3.12 5.61 -106.82 -0.60 2.52 16 9 C -0.47 -12.62 8.96 -37.74 -0.34 -12.96 16 10 H 0.08 2.06 8.02 -52.48 -0.42 1.64 16 11 C 0.09 2.26 4.79 -17.34 -0.08 2.17 16 12 N -0.77 -19.83 11.63 55.55 0.65 -19.18 16 13 Si 0.89 18.47 29.66 -169.99 -5.04 13.43 16 14 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 15 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 16 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 17 C -0.24 -5.90 9.80 -38.87 -0.38 -6.28 16 18 C -0.06 -1.39 9.69 -39.66 -0.38 -1.78 16 19 C 0.08 1.06 1.29 -67.71 -0.09 0.98 16 20 H 0.03 0.46 6.66 -51.92 -0.35 0.11 16 21 C -0.15 -1.82 8.34 37.16 0.31 -1.51 16 22 C -0.09 -1.04 2.10 -90.62 -0.19 -1.23 16 23 C -0.15 -1.40 8.65 37.16 0.32 -1.07 16 24 C -0.14 -1.66 8.62 37.15 0.32 -1.34 16 25 H 0.05 0.62 6.26 -51.93 -0.33 0.30 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.83 6.25 -51.93 -0.32 0.51 16 28 H 0.07 0.96 6.24 -51.93 -0.32 0.63 16 29 H 0.09 1.54 6.10 -51.93 -0.32 1.22 16 30 H 0.07 1.12 5.70 -51.93 -0.30 0.82 16 31 H 0.02 0.44 6.01 -51.93 -0.31 0.13 16 32 H 0.08 1.71 8.05 -52.49 -0.42 1.29 16 33 H 0.10 2.77 6.35 -52.49 -0.33 2.43 16 34 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 35 H 0.09 2.11 8.06 -52.48 -0.42 1.68 16 36 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.07 0.86 6.43 -51.93 -0.33 0.52 16 38 H 0.05 0.71 6.16 -51.93 -0.32 0.39 16 39 H 0.05 0.56 6.57 -51.93 -0.34 0.22 16 40 H 0.07 0.81 5.96 -51.93 -0.31 0.50 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.52 6.77 -51.93 -0.35 0.17 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.99 7.38 -51.92 -0.38 0.61 16 45 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.63 6.43 -51.93 -0.33 0.29 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -26.40 343.60 -9.54 -35.95 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.46 Total: 6.17 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: -2.00 Total: -32.56 kcal Atomic # 7 Polarization: -27.94 SS G_CDS: -0.21 Total: -28.16 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.04 Total: 13.43 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -26.40 -9.54 -35.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544059574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.300 kcal (2) G-P(sol) polarization free energy of solvation -26.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds