Wall clock time and date at job start Mon Mar 30 2020 01:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.46916 * 2 1 4 4 C 1.46894 * 111.00077 * 68.00181 * 3 2 1 5 5 C 1.50706 * 109.47262 * 70.05098 * 4 3 2 6 6 C 1.38632 * 119.74582 * 265.14556 * 5 4 3 7 7 C 1.37624 * 120.24373 * 179.72057 * 6 5 4 8 8 C 1.40716 * 119.74230 * 0.56538 * 7 6 5 9 9 C 1.41399 * 120.24069 * 179.68031 * 8 7 6 10 10 H 1.08008 * 119.99971 * 161.21436 * 9 8 7 11 11 C 1.39940 * 120.00449 * 341.21581 * 9 8 7 12 12 N 1.30829 * 119.99881 * 326.77123 * 11 9 8 13 13 Si 1.86805 * 120.00337 * 146.76895 * 11 9 8 14 14 H 1.48501 * 109.46785 * 94.99250 * 13 11 9 15 15 H 1.48497 * 109.47280 * 214.99079 * 13 11 9 16 16 H 1.48496 * 109.46588 * 334.99645 * 13 11 9 17 17 C 1.40714 * 119.51292 * 359.71369 * 8 7 6 18 18 C 1.37613 * 119.74558 * 359.97438 * 17 8 7 19 19 C 1.46902 * 111.00437 * 304.04525 * 3 2 1 20 20 H 1.09009 * 109.46590 * 65.09146 * 19 3 2 21 21 C 1.52996 * 109.47309 * 185.09111 * 19 3 2 22 22 C 1.53003 * 109.47186 * 305.09694 * 19 3 2 23 23 C 1.52998 * 109.47102 * 180.02562 * 22 19 3 24 24 C 1.52995 * 109.46821 * 300.06596 * 22 19 3 25 25 H 1.09003 * 109.47425 * 64.98054 * 1 2 3 26 26 H 1.09002 * 109.46842 * 184.97858 * 1 2 3 27 27 H 1.08999 * 109.46988 * 304.97585 * 1 2 3 28 28 H 1.09002 * 109.46898 * 240.00407 * 2 1 3 29 29 H 1.09002 * 109.47253 * 120.00010 * 2 1 3 30 30 H 1.08997 * 109.47513 * 190.05214 * 4 3 2 31 31 H 1.09000 * 109.47008 * 310.05122 * 4 3 2 32 32 H 1.07999 * 119.88226 * 359.97438 * 6 5 4 33 33 H 1.07995 * 120.12673 * 180.27904 * 7 6 5 34 34 H 0.96996 * 120.00012 * 179.97438 * 12 11 9 35 35 H 1.08004 * 120.12413 * 179.97438 * 17 8 7 36 36 H 1.07998 * 119.87518 * 180.02562 * 18 17 8 37 37 H 1.09004 * 109.46988 * 60.00804 * 21 19 3 38 38 H 1.08999 * 109.47560 * 300.00200 * 21 19 3 39 39 H 1.09004 * 109.47194 * 179.97438 * 21 19 3 40 40 H 1.09002 * 109.47080 * 60.06512 * 22 19 3 41 41 H 1.09000 * 109.47037 * 306.14337 * 23 22 19 42 42 H 1.08995 * 109.47188 * 66.14598 * 23 22 19 43 43 H 1.09000 * 109.47175 * 186.14541 * 23 22 19 44 44 H 1.09010 * 109.47419 * 60.00185 * 24 22 19 45 45 H 1.08999 * 109.46946 * 179.97438 * 24 22 19 46 46 H 1.08995 * 109.47222 * 300.00236 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7107 2.0525 1.2715 5 6 2.5605 1.4631 2.3678 6 6 2.0541 0.4418 3.1568 7 6 2.8232 -0.1078 4.1569 8 6 4.1237 0.3788 4.3849 9 6 4.9206 -0.1736 5.4140 10 1 5.9912 -0.0311 5.4035 11 6 4.3223 -0.9050 6.4462 12 7 3.1257 -0.5842 6.8667 13 14 5.2320 -2.3394 7.2236 14 1 5.9405 -1.8738 8.4428 15 1 4.2608 -3.4012 7.5906 16 1 6.2179 -2.8833 6.2555 17 6 4.6251 1.4197 3.5816 18 6 3.8406 1.9499 2.5829 19 6 1.4712 2.1373 -1.1363 20 1 0.3908 2.2288 -1.0240 21 6 2.0997 3.5317 -1.1758 22 6 1.7879 1.3980 -2.4380 23 6 1.2173 2.1819 -3.6215 24 6 3.3042 1.2681 -2.5947 25 1 -0.3634 0.4346 -0.9312 26 1 -0.3633 -1.0238 0.0892 27 1 -0.3633 0.5891 0.8421 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.9205 3.1184 1.1827 31 1 0.6572 1.9083 1.5111 32 1 1.0538 0.0734 2.9833 33 1 2.4285 -0.9064 4.7675 34 1 2.7108 -1.0913 7.5819 35 1 5.6217 1.8010 3.7481 36 1 4.2234 2.7485 1.9649 37 1 3.1801 3.4402 -1.2882 38 1 1.8741 4.0584 -0.2486 39 1 1.6931 4.0898 -2.0193 40 1 1.3390 0.4051 -2.4103 41 1 0.1561 2.3683 -3.4561 42 1 1.7428 3.1322 -3.7152 43 1 1.3463 1.6037 -4.5364 44 1 3.7102 0.7092 -1.7514 45 1 3.5298 0.7410 -3.5217 46 1 3.7530 2.2610 -2.6223 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544059574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:53 Heat of formation + Delta-G solvation = -6.458550 kcal Electronic energy + Delta-G solvation = -21937.463241 eV Core-core repulsion = 19018.542503 eV Total energy + Delta-G solvation = -2918.920738 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.52609 -39.05156 -36.18013 -35.21486 -32.50596 -31.70982 -31.02210 -29.33235 -28.20842 -27.60742 -25.52973 -24.49838 -23.00192 -22.53092 -21.15050 -19.21418 -19.20169 -17.31788 -17.01307 -16.67578 -16.30817 -15.88110 -15.68020 -15.24212 -14.78107 -14.41086 -14.28243 -13.92108 -13.76474 -13.63638 -13.43375 -13.28697 -13.22231 -12.90268 -12.79550 -12.69233 -12.58904 -12.35042 -12.28251 -12.17196 -12.01209 -11.83321 -11.59157 -11.34580 -11.21970 -11.19071 -11.05044 -10.80627 -9.34572 -9.24199 -8.93739 -8.76301 -6.24930 0.99332 1.19813 1.36139 1.46261 1.56984 2.18875 2.60928 3.21829 3.80541 3.92999 4.01949 4.13808 4.34207 4.35874 4.37142 4.44237 4.56712 4.58126 4.62036 4.65240 4.68106 4.73350 4.80685 4.92044 4.94110 5.05057 5.07567 5.14589 5.15241 5.16765 5.17558 5.21277 5.30406 5.35612 5.38220 5.46453 5.52851 5.60542 5.65971 5.73591 6.03032 6.11782 6.24430 6.40749 6.42441 6.49783 6.72222 6.95352 7.09312 8.22148 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.031457 B = 0.003913 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.902235 B = 7153.126542 C = 7311.201842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.049 3.951 3 N -0.528 5.528 4 C 0.120 3.880 5 C -0.198 4.198 6 C -0.085 4.085 7 C -0.208 4.208 8 C 0.086 3.914 9 C -0.514 4.514 10 H 0.073 0.927 11 C 0.052 3.948 12 N -0.803 5.803 13 Si 0.969 3.031 14 H -0.259 1.259 15 H -0.263 1.263 16 H -0.260 1.260 17 C -0.255 4.255 18 C -0.064 4.064 19 C 0.083 3.917 20 H 0.038 0.962 21 C -0.147 4.147 22 C -0.087 4.087 23 C -0.142 4.142 24 C -0.136 4.136 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.029 0.971 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.291 0.709 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.044 0.956 45 H 0.053 0.947 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.359 2.577 -15.413 16.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.079 4.079 3 N -0.252 5.252 4 C -0.007 4.007 5 C -0.200 4.200 6 C -0.104 4.104 7 C -0.228 4.228 8 C 0.083 3.917 9 C -0.541 4.541 10 H 0.091 0.909 11 C -0.167 4.167 12 N -0.427 5.427 13 Si 0.789 3.211 14 H -0.183 1.183 15 H -0.187 1.187 16 H -0.184 1.184 17 C -0.275 4.275 18 C -0.083 4.083 19 C -0.025 4.025 20 H 0.056 0.944 21 C -0.204 4.204 22 C -0.106 4.106 23 C -0.199 4.199 24 C -0.193 4.193 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.045 2.558 -15.300 16.312 hybrid contribution -0.458 -0.672 1.072 1.346 sum -5.503 1.887 -14.228 15.371 Atomic orbital electron populations 1.22328 0.97629 1.02329 1.01706 1.22089 0.93257 0.90669 1.01902 1.62272 1.59165 1.01915 1.01828 1.20716 0.95159 0.97597 0.87219 1.19197 0.96335 1.03006 1.01416 1.20645 0.97637 0.96633 0.95487 1.21001 0.96713 1.03752 1.01297 1.17849 0.92360 0.89634 0.91839 1.19748 0.95174 1.31968 1.07255 0.90900 1.26727 0.95392 0.98952 0.95638 1.69958 1.16655 1.34751 1.21288 0.85418 0.79346 0.77691 0.78656 1.18317 1.18746 1.18428 1.21056 1.00583 1.02295 1.03537 1.20562 0.93712 0.98293 0.95698 1.21713 0.96278 0.94088 0.90437 0.94370 1.21987 1.01604 0.95133 1.01718 1.21148 0.96827 0.98992 0.93652 1.21839 1.00681 1.00400 0.97022 1.21722 0.95209 1.01681 1.00703 0.91481 0.91839 0.93594 0.90314 0.92822 0.90459 0.95258 0.88519 0.89539 0.89778 0.89230 0.87339 0.92255 0.93285 0.90557 0.91596 0.92554 0.91951 0.92022 0.93641 0.92831 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.50 9.03 71.98 0.65 -3.85 16 2 C 0.05 1.43 5.30 86.30 0.46 1.88 16 3 N -0.53 -15.61 3.77 -875.52 -3.30 -18.91 16 4 C 0.12 4.03 4.85 85.56 0.41 4.44 16 5 C -0.20 -8.46 4.91 -19.67 -0.10 -8.56 16 6 C -0.09 -3.99 8.17 22.22 0.18 -3.81 16 7 C -0.21 -11.22 8.81 22.73 0.20 -11.02 16 8 C 0.09 4.79 5.61 -21.29 -0.12 4.67 16 9 C -0.51 -28.73 8.96 23.46 0.21 -28.52 16 10 H 0.07 3.99 8.02 -2.91 -0.02 3.97 16 11 C 0.05 2.67 4.79 85.25 0.41 3.08 16 12 N -0.80 -42.56 11.63 21.83 0.25 -42.31 16 13 Si 0.97 38.62 29.66 68.60 2.04 40.65 16 14 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 15 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 16 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 17 C -0.26 -13.13 9.80 22.73 0.22 -12.91 16 18 C -0.06 -2.90 9.69 22.22 0.22 -2.69 16 19 C 0.08 1.92 1.29 44.91 0.06 1.98 16 20 H 0.04 0.89 6.66 -2.38 -0.02 0.87 16 21 C -0.15 -3.18 8.34 71.98 0.60 -2.58 16 22 C -0.09 -1.75 2.10 -10.79 -0.02 -1.77 16 23 C -0.14 -2.19 8.65 71.98 0.62 -1.57 16 24 C -0.14 -2.95 8.62 71.98 0.62 -2.33 16 25 H 0.07 1.44 6.26 -2.39 -0.01 1.43 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.24 6.25 -2.39 -0.01 1.23 16 28 H 0.08 2.12 6.24 -2.39 -0.01 2.10 16 29 H 0.05 1.92 6.10 -2.39 -0.01 1.90 16 30 H 0.08 2.45 5.70 -2.39 -0.01 2.44 16 31 H 0.03 0.97 6.01 -2.39 -0.01 0.96 16 32 H 0.10 4.12 8.05 -2.91 -0.02 4.10 16 33 H 0.09 4.86 6.35 -2.91 -0.02 4.84 16 34 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 35 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.06 1.38 6.43 -2.39 -0.02 1.36 16 38 H 0.05 1.12 6.16 -2.39 -0.01 1.11 16 39 H 0.08 1.31 6.57 -2.38 -0.02 1.29 16 40 H 0.07 1.36 5.96 -2.39 -0.01 1.35 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.91 6.77 -2.39 -0.02 0.89 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.04 1.22 7.38 -2.38 -0.02 1.20 16 45 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.05 1.18 6.43 -2.39 -0.02 1.16 16 Total: -1.00 -58.62 343.60 4.56 -54.06 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.95 Total: 30.04 kcal Atomic # 6 Polarization: -68.16 SS G_CDS: 4.62 Total: -63.54 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -3.05 Total: -61.22 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.04 Total: 40.65 kcal Total: -58.62 4.56 -54.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544059574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.606 kcal (2) G-P(sol) polarization free energy of solvation -58.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds