Wall clock time and date at job start Mon Mar 30 2020 01:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46904 * 109.47506 * 2 1 4 4 C 1.46897 * 111.00249 * 161.99324 * 3 2 1 5 5 C 1.50703 * 109.46808 * 293.95528 * 4 3 2 6 6 H 1.07998 * 120.00234 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99922 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00218 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99777 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47101 * 89.99963 * 9 7 5 11 11 H 1.48507 * 109.47366 * 209.99997 * 9 7 5 12 12 H 1.48499 * 109.47457 * 330.00190 * 9 7 5 13 13 C 1.46900 * 111.00123 * 285.95064 * 3 2 1 14 14 H 1.08996 * 109.46897 * 310.96212 * 13 3 2 15 15 C 1.52996 * 109.46969 * 190.96454 * 13 3 2 16 16 C 1.50695 * 109.47454 * 70.96342 * 13 3 2 17 17 C 1.38236 * 119.99956 * 44.22175 * 16 13 3 18 18 C 1.38233 * 120.00213 * 179.81382 * 17 16 13 19 19 C 1.38238 * 119.99811 * 0.41474 * 18 17 16 20 20 C 1.50700 * 120.00041 * 179.79591 * 19 18 17 21 21 C 1.53002 * 109.46928 * 300.02442 * 20 19 18 22 22 C 1.53007 * 109.47431 * 60.02015 * 20 19 18 23 23 C 1.38232 * 119.99977 * 359.81464 * 19 18 17 24 24 C 1.38235 * 120.00192 * 224.49596 * 16 13 3 25 25 H 1.08997 * 109.47235 * 191.01378 * 1 2 3 26 26 H 1.09000 * 109.46851 * 311.01360 * 1 2 3 27 27 H 1.09002 * 109.46873 * 71.01184 * 1 2 3 28 28 H 1.09001 * 109.47239 * 240.00649 * 2 1 3 29 29 H 1.09000 * 109.47582 * 120.00308 * 2 1 3 30 30 H 1.08997 * 109.47071 * 173.96036 * 4 3 2 31 31 H 1.08998 * 109.46947 * 53.95206 * 4 3 2 32 32 H 0.96997 * 120.00408 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47344 * 59.99765 * 15 13 3 34 34 H 1.09005 * 109.47431 * 179.97438 * 15 13 3 35 35 H 1.08996 * 109.47114 * 299.99625 * 15 13 3 36 36 H 1.08006 * 120.00008 * 359.97438 * 17 16 13 37 37 H 1.08006 * 120.00466 * 180.21176 * 18 17 16 38 38 H 1.08995 * 109.47421 * 180.02562 * 20 19 18 39 39 H 1.09005 * 109.47167 * 180.02562 * 21 20 19 40 40 H 1.09009 * 109.46797 * 299.99844 * 21 20 19 41 41 H 1.08997 * 109.47659 * 59.99594 * 21 20 19 42 42 H 1.08994 * 109.46635 * 60.00034 * 22 20 19 43 43 H 1.08996 * 109.47122 * 180.02562 * 22 20 19 44 44 H 1.08997 * 109.46716 * 300.00136 * 22 20 19 45 45 H 1.08001 * 119.99945 * 179.97438 * 23 19 18 46 46 H 1.07990 * 119.99790 * 359.97438 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4249 1.4465 0.4239 5 6 3.5327 1.0281 1.8677 6 1 2.6462 0.7444 2.4154 7 6 4.7634 1.0064 2.4891 8 7 4.8576 0.6408 3.7489 9 14 6.2968 1.4965 1.5416 10 1 6.5249 2.9564 1.6899 11 1 7.4674 0.7557 2.0768 12 1 6.1174 1.1670 0.1048 13 6 1.8400 2.0070 -1.3186 14 1 2.2267 1.3412 -2.0901 15 6 2.5985 3.3349 -1.3638 16 6 0.3738 2.2576 -1.5602 17 6 -0.4104 2.7937 -0.5560 18 6 -1.7546 3.0272 -0.7788 19 6 -2.3164 2.7166 -2.0030 20 6 -3.7827 2.9668 -2.2444 21 6 -4.6097 2.1591 -1.2421 22 6 -4.0816 4.4570 -2.0686 23 6 -1.5332 2.1760 -3.0057 24 6 -0.1882 1.9460 -2.7841 25 1 -0.3633 -1.0087 0.1963 26 1 -0.3633 0.6744 0.7754 27 1 -0.3633 0.3344 -0.9718 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.7936 2.4662 0.3127 31 1 4.0207 0.7751 -0.1944 32 1 5.7233 0.6259 4.1862 33 1 3.6591 3.1537 -1.1890 34 1 2.4655 3.7963 -2.3424 35 1 2.2118 4.0007 -0.5923 36 1 0.0276 3.0327 0.4019 37 1 -2.3666 3.4493 0.0047 38 1 -4.0413 2.6615 -3.2583 39 1 -5.6703 2.3397 -1.4169 40 1 -4.3968 1.0974 -1.3674 41 1 -4.3511 2.4643 -0.2281 42 1 -3.4925 5.0324 -2.7826 43 1 -5.1422 4.6379 -2.2427 44 1 -3.8230 4.7622 -1.0546 45 1 -1.9723 1.9329 -3.9620 46 1 0.4235 1.5235 -3.5673 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544142100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:37 Heat of formation + Delta-G solvation = 2.614118 kcal Electronic energy + Delta-G solvation = -21996.044332 eV Core-core repulsion = 19077.517015 eV Total energy + Delta-G solvation = -2918.527317 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.99827 -38.92687 -36.17324 -34.68033 -33.19226 -31.89886 -31.60187 -29.36528 -28.24490 -27.91977 -25.04813 -23.88880 -23.48719 -22.81135 -20.91723 -20.46263 -19.06592 -17.42723 -16.70140 -16.56202 -16.19217 -15.85870 -15.60809 -15.18654 -14.75246 -14.61663 -14.50554 -14.35770 -14.20217 -13.95484 -13.64788 -13.39778 -13.08275 -13.01648 -12.93179 -12.77113 -12.50517 -12.36787 -12.19501 -12.08765 -12.02091 -11.84215 -11.80804 -11.56625 -11.40044 -11.31339 -11.23990 -10.74533 -9.64611 -9.18131 -9.00200 -8.27298 -6.29403 0.54716 0.65985 1.33938 1.35279 1.45713 2.34433 2.92047 3.06039 3.23487 3.79342 3.92965 4.01099 4.18314 4.25233 4.27480 4.36232 4.40207 4.43049 4.49621 4.62214 4.66848 4.70967 4.75898 4.83931 4.85262 4.86115 4.98161 5.00687 5.04957 5.05886 5.07975 5.16126 5.23070 5.26196 5.32046 5.34551 5.42641 5.42958 5.44429 5.57854 5.68457 5.86519 5.88777 6.05903 6.25236 6.42860 6.70446 6.77216 7.33549 8.89503 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.030276 B = 0.004206 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.605152 B = 6654.940112 C = 6914.094657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 N -0.528 5.528 4 C 0.166 3.834 5 C -0.512 4.512 6 H 0.036 0.964 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.943 3.057 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.252 1.252 13 C 0.113 3.887 14 H 0.041 0.959 15 C -0.142 4.142 16 C -0.070 4.070 17 C -0.095 4.095 18 C -0.123 4.123 19 C -0.083 4.083 20 C -0.053 4.053 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.121 4.121 24 C -0.124 4.124 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.025 0.975 29 H 0.051 0.949 30 H 0.043 0.957 31 H -0.019 1.019 32 H 0.266 0.734 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.140 0.860 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.987 5.463 -16.861 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.067 4.067 3 N -0.253 5.253 4 C 0.039 3.961 5 C -0.550 4.550 6 H 0.054 0.946 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.767 3.233 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.175 1.175 13 C 0.005 3.995 14 H 0.059 0.941 15 C -0.199 4.199 16 C -0.071 4.071 17 C -0.113 4.113 18 C -0.141 4.141 19 C -0.083 4.083 20 C -0.071 4.071 21 C -0.200 4.200 22 C -0.199 4.199 23 C -0.139 4.139 24 C -0.142 4.142 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.061 0.939 31 H -0.001 1.001 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.141 0.859 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.158 0.842 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.139 5.703 -16.380 23.692 hybrid contribution 1.655 -0.575 0.028 1.752 sum -14.484 5.129 -16.353 22.439 Atomic orbital electron populations 1.21977 0.94028 1.00896 1.02238 1.21937 0.96436 0.89000 0.99354 1.61944 1.20229 1.17668 1.25428 1.20079 0.85943 0.96270 0.93814 1.21270 0.93719 1.43971 0.96054 0.94557 1.25811 1.02394 0.95025 0.95632 1.70051 1.25868 1.50295 1.12827 0.85773 0.78525 0.79172 0.79855 1.18799 1.20869 1.17536 1.20644 0.92871 0.96113 0.89906 0.94067 1.21949 0.99536 0.95967 1.02482 1.19632 0.94253 0.98850 0.94343 1.20921 0.93920 0.98059 0.98402 1.21034 0.94391 1.01131 0.97508 1.20038 0.96312 0.98452 0.93495 1.20138 0.89736 0.96535 1.00682 1.21851 0.99922 0.99576 0.98697 1.21839 1.01955 0.94359 1.01768 1.21171 0.93188 1.00015 0.99551 1.21110 0.95798 1.00950 0.96376 0.92642 0.93254 0.91325 0.95724 0.93056 0.93904 1.00096 0.92518 0.92753 0.90331 0.92550 0.87709 0.85920 0.89503 0.91072 0.93145 0.93088 0.92891 0.91119 0.93026 0.84240 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 8.40 71.98 0.60 -3.92 16 2 C 0.06 2.45 5.53 86.30 0.48 2.92 16 3 N -0.53 -22.04 3.84 -879.95 -3.38 -25.42 16 4 C 0.17 8.00 3.27 85.56 0.28 8.28 16 5 C -0.51 -29.94 8.81 25.60 0.23 -29.71 16 6 H 0.04 2.38 7.53 -2.91 -0.02 2.36 16 7 C 0.01 0.49 5.47 84.66 0.46 0.96 16 8 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 9 Si 0.94 44.35 27.47 68.60 1.88 46.23 16 10 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 13 C 0.11 3.80 2.33 44.17 0.10 3.90 16 14 H 0.04 1.36 7.67 -2.39 -0.02 1.34 16 15 C -0.14 -4.46 8.37 71.98 0.60 -3.86 16 16 C -0.07 -2.06 2.56 -19.87 -0.05 -2.11 16 17 C -0.09 -2.85 6.90 22.27 0.15 -2.70 16 18 C -0.12 -3.07 8.71 22.27 0.19 -2.88 16 19 C -0.08 -1.76 4.78 -19.87 -0.09 -1.86 16 20 C -0.05 -0.84 3.09 -11.54 -0.04 -0.87 16 21 C -0.14 -2.22 9.01 71.98 0.65 -1.57 16 22 C -0.14 -2.07 9.01 71.98 0.65 -1.42 16 23 C -0.12 -2.55 9.67 22.27 0.22 -2.33 16 24 C -0.12 -3.01 8.85 22.27 0.20 -2.82 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.78 7.17 -2.39 -0.02 1.77 16 27 H 0.07 2.13 4.95 -2.39 -0.01 2.12 16 28 H 0.02 0.93 7.83 -2.39 -0.02 0.91 16 29 H 0.05 2.42 6.58 -2.39 -0.02 2.40 16 30 H 0.04 2.01 4.98 -2.39 -0.01 2.00 16 31 H -0.02 -0.91 7.18 -2.39 -0.02 -0.93 16 32 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 33 H 0.05 1.80 6.13 -2.39 -0.01 1.79 16 34 H 0.08 2.00 8.14 -2.38 -0.02 1.99 16 35 H 0.06 1.86 8.12 -2.39 -0.02 1.84 16 36 H 0.10 3.69 7.85 -2.91 -0.02 3.67 16 37 H 0.12 2.80 7.10 -2.91 -0.02 2.78 16 38 H 0.09 1.17 7.88 -2.39 -0.02 1.15 16 39 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.05 0.86 7.39 -2.39 -0.02 0.84 16 42 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.05 0.82 7.39 -2.39 -0.02 0.80 16 45 H 0.14 2.19 7.95 -2.91 -0.02 2.17 16 46 H 0.13 2.71 8.00 -2.92 -0.02 2.69 16 Total: -1.00 -65.61 349.66 4.30 -61.31 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.87 Total: 17.60 kcal Atomic # 6 Polarization: -44.63 SS G_CDS: 4.63 Total: -39.99 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -3.08 Total: -85.15 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Total: -65.61 4.30 -61.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544142100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.923 kcal (2) G-P(sol) polarization free energy of solvation -65.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds