Wall clock time and date at job start Mon Mar 30 2020 01:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47313 * 2 1 4 4 N 1.46502 * 109.46744 * 119.99758 * 2 1 3 5 5 S 1.65598 * 119.99968 * 264.99818 * 4 2 1 6 6 O 1.42099 * 104.27515 * 181.07747 * 5 4 2 7 7 O 1.42101 * 104.27890 * 308.92955 * 5 4 2 8 8 C 1.81395 * 104.44961 * 65.00243 * 5 4 2 9 9 C 1.50703 * 109.47028 * 179.97438 * 8 5 4 10 10 H 1.08003 * 119.99973 * 359.97438 * 9 8 5 11 11 C 1.37878 * 119.99924 * 180.02562 * 9 8 5 12 12 N 1.31513 * 119.99866 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99832 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.46847 * 90.00668 * 13 11 9 15 15 H 1.48501 * 109.46878 * 210.00415 * 13 11 9 16 16 H 1.48497 * 109.47124 * 330.00399 * 13 11 9 17 17 C 1.50700 * 109.46929 * 239.99679 * 2 1 3 18 18 C 1.33644 * 122.74710 * 85.00549 * 17 2 1 19 19 S 1.76200 * 107.92352 * 179.73069 * 18 17 2 20 20 C 1.70979 * 90.28153 * 359.97438 * 19 18 17 21 21 N 1.29028 * 110.16576 * 0.02562 * 20 19 18 22 22 H 1.08997 * 109.47313 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46973 * 300.00515 * 1 2 3 24 24 H 1.09000 * 109.47376 * 59.99880 * 1 2 3 25 25 H 0.97001 * 119.99857 * 85.00753 * 4 2 1 26 26 H 1.08996 * 109.47168 * 299.99790 * 8 5 4 27 27 H 1.09001 * 109.47026 * 59.99919 * 8 5 4 28 28 H 0.96998 * 119.99928 * 179.97438 * 12 11 9 29 29 H 1.08001 * 126.03803 * 359.72486 * 18 17 2 30 30 H 1.07997 * 124.91782 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4121 0.1772 2.5505 6 8 2.8605 -0.8028 3.4766 7 8 3.2875 1.1907 2.0751 8 6 0.8407 0.8990 3.0984 9 6 1.0716 1.7216 4.3399 10 1 2.0643 1.8018 4.7577 11 6 0.0153 2.3710 4.9429 12 7 0.2168 3.0893 6.0259 13 14 -1.7018 2.2317 4.2206 14 1 -2.3985 1.0661 4.8215 15 1 -2.4650 3.4708 4.5159 16 1 -1.6068 2.0475 2.7501 17 6 2.0323 -0.7105 -1.2304 18 6 2.1810 -0.0979 -2.4089 19 16 2.7931 -1.2814 -3.5618 20 6 2.7889 -2.4820 -2.3444 21 7 2.3666 -1.9851 -1.2311 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 2.1110 -1.6562 1.1949 26 1 0.4387 1.5353 2.3101 27 1 0.1315 0.1011 3.3184 28 1 -0.5262 3.5464 6.4499 29 1 1.9641 0.9393 -2.6177 30 1 3.0955 -3.5077 -2.4868 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579614511.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:49 Heat of formation + Delta-G solvation = -58.556510 kcal Electronic energy + Delta-G solvation = -17322.693641 eV Core-core repulsion = 14370.952299 eV Total energy + Delta-G solvation = -2951.741342 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.97875 -38.06228 -36.94810 -36.75659 -35.31484 -31.98471 -31.78851 -29.74805 -26.46506 -25.08484 -23.96016 -20.67539 -20.34745 -19.54351 -19.25527 -18.21388 -17.39785 -16.94698 -16.51500 -16.09114 -15.86555 -15.66906 -14.81605 -14.65212 -14.31818 -14.16723 -14.05743 -13.62366 -13.24839 -13.09555 -13.06055 -13.03592 -12.61251 -12.50550 -12.26137 -11.97413 -11.79391 -11.39631 -10.91149 -10.61896 -10.48457 -10.35643 -9.72553 -8.42244 -6.59374 -0.52736 -0.17674 0.52937 0.80515 1.36502 1.39485 1.50690 1.79045 2.04179 2.30507 2.89074 2.96180 3.21095 3.44712 3.85970 4.18343 4.21742 4.30244 4.45203 4.48979 4.55162 4.62347 4.84201 5.09459 5.13403 5.23192 5.36542 5.83817 6.15726 6.45268 6.81648 7.09196 8.73144 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.030966 B = 0.005178 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.004481 B = 5406.090340 C = 5905.740154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.212 3.788 3 H 0.106 0.894 4 N -1.104 6.104 5 S 2.625 3.375 6 O -1.007 7.007 7 O -1.003 7.003 8 C -0.478 4.478 9 C -0.557 4.557 10 H 0.036 0.964 11 C 0.024 3.976 12 N -0.935 5.935 13 Si 0.951 3.049 14 H -0.260 1.260 15 H -0.279 1.279 16 H -0.221 1.221 17 C 0.045 3.955 18 C -0.256 4.256 19 S 0.172 5.828 20 C 0.014 3.986 21 N -0.497 5.497 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.095 0.905 25 H 0.425 0.575 26 H 0.115 0.885 27 H 0.109 0.891 28 H 0.276 0.724 29 H 0.201 0.799 30 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.085 -9.288 -23.631 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.102 3.898 3 H 0.123 0.877 4 N -0.864 5.864 5 S 2.723 3.277 6 O -0.998 6.998 7 O -0.993 6.993 8 C -0.612 4.612 9 C -0.595 4.595 10 H 0.055 0.945 11 C -0.177 4.177 12 N -0.572 5.572 13 Si 0.771 3.229 14 H -0.185 1.185 15 H -0.204 1.204 16 H -0.143 1.143 17 C -0.088 4.088 18 C -0.396 4.396 19 S 0.425 5.575 20 C -0.284 4.284 21 N -0.211 5.211 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.113 0.887 25 H 0.261 0.739 26 H 0.133 0.867 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.218 0.782 30 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.995 -9.297 -23.746 25.521 hybrid contribution -1.158 0.257 1.255 1.727 sum -2.153 -9.040 -22.491 24.335 Atomic orbital electron populations 1.22490 0.92446 1.04032 1.04360 1.19536 0.95244 0.95127 0.79913 0.87657 1.55367 1.84215 1.20283 1.26531 1.04246 0.77777 0.73241 0.72441 1.93450 1.81559 1.60553 1.64208 1.93446 1.64053 1.61627 1.80191 1.28343 1.18097 1.08653 1.06097 1.20355 0.96487 1.32623 1.10067 0.94528 1.26056 1.04646 0.92700 0.94306 1.70028 1.34590 1.31749 1.20813 0.85656 0.76822 0.78630 0.81806 1.18504 1.20426 1.14332 1.20241 1.02934 0.89843 0.95823 1.27169 1.09777 1.06755 0.95897 1.83795 1.58265 1.00850 1.14621 1.28932 1.02313 1.06377 0.90738 1.65915 1.14700 1.12294 1.28218 0.91101 0.91214 0.88655 0.73902 0.86713 0.87321 0.91497 0.78215 0.75621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 9.46 71.98 0.68 -3.04 16 2 C 0.21 5.55 3.15 44.25 0.14 5.69 16 3 H 0.11 2.76 7.48 -2.39 -0.02 2.74 16 4 N -1.10 -35.06 5.32 -172.52 -0.92 -35.97 16 5 S 2.63 111.12 5.36 -56.49 -0.30 110.81 16 6 O -1.01 -49.41 18.08 -127.65 -2.31 -51.71 16 7 O -1.00 -47.91 17.39 -127.65 -2.22 -50.13 16 8 C -0.48 -20.67 4.05 71.24 0.29 -20.38 16 9 C -0.56 -31.73 9.68 25.60 0.25 -31.49 16 10 H 0.04 2.36 7.96 -2.91 -0.02 2.33 16 11 C 0.02 1.37 5.47 84.66 0.46 1.83 16 12 N -0.93 -57.13 13.96 21.45 0.30 -56.83 16 13 Si 0.95 40.01 27.47 68.60 1.88 41.90 16 14 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 15 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 16 H -0.22 -7.79 6.54 99.48 0.65 -7.14 16 17 C 0.04 1.06 5.80 41.52 0.24 1.30 16 18 C -0.26 -4.54 11.14 66.78 0.74 -3.79 16 19 S 0.17 2.25 23.22 -56.49 -1.31 0.94 16 20 C 0.01 0.22 12.23 130.65 1.60 1.82 16 21 N -0.50 -11.76 9.62 -191.55 -1.84 -13.60 16 22 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.07 1.59 5.78 -2.39 -0.01 1.57 16 24 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.42 12.73 8.11 -96.74 -0.78 11.95 16 26 H 0.12 4.27 5.83 -2.39 -0.01 4.26 16 27 H 0.11 4.16 7.57 -2.39 -0.02 4.14 16 28 H 0.28 15.44 8.31 -92.71 -0.77 14.66 16 29 H 0.20 2.54 8.06 -2.91 -0.02 2.51 16 30 H 0.23 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -79.35 285.58 -1.98 -81.33 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.34 Total: 21.33 kcal Atomic # 6 Polarization: -52.47 SS G_CDS: 4.40 Total: -48.06 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -2.46 Total: -106.40 kcal Atomic # 8 Polarization: -97.31 SS G_CDS: -4.53 Total: -101.84 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.88 Total: 41.90 kcal Atomic # 16 Polarization: 113.37 SS G_CDS: -1.61 Total: 111.75 kcal Total: -79.35 -1.98 -81.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579614511.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.771 kcal (2) G-P(sol) polarization free energy of solvation -79.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds