Wall clock time and date at job start Mon Mar 30 2020 01:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47112 * 2 1 4 4 N 1.46499 * 109.47133 * 239.99324 * 2 1 3 5 5 S 1.65593 * 119.99833 * 95.00483 * 4 2 1 6 6 O 1.42104 * 104.27905 * 308.92754 * 5 4 2 7 7 O 1.42102 * 104.27718 * 181.06534 * 5 4 2 8 8 C 1.81399 * 104.45079 * 64.99683 * 5 4 2 9 9 C 1.50703 * 109.47147 * 179.97438 * 8 5 4 10 10 H 1.07998 * 120.00275 * 0.02562 * 9 8 5 11 11 C 1.37885 * 119.99908 * 180.02562 * 9 8 5 12 12 N 1.31511 * 119.99697 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99899 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47454 * 59.99701 * 13 11 9 15 15 H 1.48496 * 109.47112 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46926 * 299.99492 * 13 11 9 17 17 C 1.50701 * 109.46520 * 119.99501 * 2 1 3 18 18 C 1.33644 * 122.75095 * 274.73366 * 17 2 1 19 19 S 1.76196 * 107.92599 * 179.97438 * 18 17 2 20 20 C 1.70979 * 90.28189 * 0.26981 * 19 18 17 21 21 N 1.29021 * 110.16890 * 359.84782 * 20 19 18 22 22 H 1.09004 * 109.47144 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47240 * 300.00658 * 1 2 3 24 24 H 1.09002 * 109.46477 * 60.00638 * 1 2 3 25 25 H 0.97001 * 119.99882 * 274.99955 * 4 2 1 26 26 H 1.09001 * 109.47190 * 299.99797 * 8 5 4 27 27 H 1.09004 * 109.47089 * 59.99930 * 8 5 4 28 28 H 0.97006 * 119.99823 * 180.02562 * 12 11 9 29 29 H 1.08001 * 126.03317 * 0.03496 * 18 17 2 30 30 H 1.07997 * 124.91628 * 179.83482 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 16 2.4123 0.1769 -2.5504 6 8 1.2752 0.9964 -2.7846 7 8 2.8125 -0.8079 -3.4934 8 6 3.8314 1.1870 -2.0440 9 6 4.2874 2.0312 -3.2061 10 1 3.7745 1.9668 -4.1544 11 6 5.3594 2.8857 -3.0588 12 7 5.9836 2.9644 -1.9039 13 14 5.9242 3.9326 -4.4991 14 1 4.8147 4.8200 -4.9311 15 1 7.0859 4.7594 -4.0845 16 1 6.3206 3.0509 -5.6264 17 6 2.0322 -0.7103 1.2306 18 6 2.1857 -0.0964 2.4077 19 16 2.7877 -1.2824 3.5634 20 6 2.7807 -2.4839 2.3470 21 7 2.3621 -1.9862 1.2326 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 2.1110 -1.6563 -1.1947 26 1 3.5400 1.8341 -1.2167 27 1 4.6460 0.5359 -1.7266 28 1 6.7375 3.5659 -1.8001 29 1 1.9766 0.9428 2.6143 30 1 3.0832 -3.5106 2.4905 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579614512.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:51 Heat of formation + Delta-G solvation = -34.016454 kcal Electronic energy + Delta-G solvation = -17296.035956 eV Core-core repulsion = 14345.358751 eV Total energy + Delta-G solvation = -2950.677205 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.03525 -36.19668 -35.48333 -34.91644 -33.34106 -30.84920 -29.02125 -28.70018 -25.52602 -23.52005 -22.92084 -19.66608 -18.72817 -18.29429 -17.22274 -16.38887 -15.60642 -15.46441 -15.34804 -14.71224 -14.35038 -14.19457 -13.58547 -13.32782 -12.99634 -12.50708 -12.24075 -12.13615 -11.81515 -11.43343 -11.37054 -11.12852 -11.05151 -10.88127 -10.74477 -10.61169 -9.85489 -9.74863 -9.57285 -9.50636 -8.96169 -8.73584 -8.68949 -6.32775 -4.43373 0.65473 1.30488 1.37949 1.65297 2.74755 3.24133 3.26184 3.31162 3.62008 4.12214 4.24582 4.75737 4.89124 5.00122 5.13359 5.22143 5.24029 5.40063 5.47441 5.62570 5.92468 6.03484 6.32399 6.41936 6.66203 6.80581 7.44755 7.51388 7.72244 7.75884 8.58632 9.24210 10.78922 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.021776 B = 0.005564 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.519358 B = 5030.776314 C = 5764.123971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.230 3.770 3 H 0.101 0.899 4 N -1.119 6.119 5 S 2.583 3.417 6 O -0.980 6.980 7 O -0.980 6.980 8 C -0.421 4.421 9 C -0.534 4.534 10 H 0.069 0.931 11 C 0.076 3.924 12 N -0.879 5.879 13 Si 0.904 3.096 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.269 1.269 17 C 0.067 3.933 18 C -0.247 4.247 19 S 0.111 5.889 20 C 0.022 3.978 21 N -0.458 5.458 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.417 0.583 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.268 0.732 29 H 0.182 0.818 30 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.625 -7.082 12.873 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.119 3.881 3 H 0.119 0.881 4 N -0.874 5.874 5 S 2.683 3.317 6 O -0.970 6.970 7 O -0.970 6.970 8 C -0.556 4.556 9 C -0.573 4.573 10 H 0.087 0.913 11 C -0.130 4.130 12 N -0.515 5.515 13 Si 0.730 3.270 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.194 1.194 17 C -0.066 4.066 18 C -0.386 4.386 19 S 0.363 5.637 20 C -0.277 4.277 21 N -0.171 5.171 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.102 0.898 25 H 0.251 0.749 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.199 0.801 30 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.745 -7.260 12.729 16.131 hybrid contribution 0.705 0.654 -0.701 1.190 sum -6.039 -6.606 12.027 14.993 Atomic orbital electron populations 1.22318 0.93853 1.02819 1.03356 1.19168 0.94329 0.94483 0.80113 0.88101 1.55844 1.82826 1.19850 1.28889 1.05871 0.77772 0.75001 0.73078 1.93472 1.49454 1.70213 1.83845 1.93488 1.84891 1.59281 1.59375 1.27733 1.12023 1.08899 1.06961 1.20292 1.17112 1.24497 0.95440 0.91283 1.24929 0.95360 0.96224 0.96484 1.69948 1.20938 1.36883 1.23754 0.86436 0.78488 0.80127 0.81943 1.19402 1.20742 1.19420 1.20508 1.00886 0.89325 0.95907 1.26828 1.10682 1.05238 0.95866 1.83959 1.60414 1.02691 1.16659 1.28387 1.03560 1.04732 0.90982 1.65940 1.12969 1.11948 1.26239 0.92139 0.91853 0.89837 0.74921 0.90078 0.89704 0.92213 0.80113 0.78417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.50 37.16 0.35 -1.85 16 2 C 0.23 3.49 3.02 -69.08 -0.21 3.28 16 3 H 0.10 1.49 7.15 -51.93 -0.37 1.12 16 4 N -1.12 -19.46 5.32 -5.88 -0.03 -19.49 16 5 S 2.58 55.95 5.30 -107.50 -0.57 55.38 16 6 O -0.98 -22.80 17.11 -57.54 -0.98 -23.79 16 7 O -0.98 -23.94 18.08 -57.54 -1.04 -24.98 16 8 C -0.42 -10.24 5.72 36.01 0.21 -10.04 16 9 C -0.53 -14.83 9.13 -34.44 -0.31 -15.15 16 10 H 0.07 1.88 7.71 -52.49 -0.40 1.48 16 11 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 12 N -0.88 -24.86 13.29 55.43 0.74 -24.12 16 13 Si 0.90 21.02 29.54 -169.99 -5.02 15.99 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 C 0.07 0.93 5.80 -84.22 -0.49 0.44 16 18 C -0.25 -2.85 11.14 29.12 0.32 -2.52 16 19 S 0.11 1.05 23.22 -107.50 -2.50 -1.45 16 20 C 0.02 0.23 12.23 51.58 0.63 0.86 16 21 N -0.46 -6.32 9.63 -11.90 -0.11 -6.44 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.08 1.25 7.42 -51.93 -0.39 0.86 16 25 H 0.42 6.89 8.11 -34.47 -0.28 6.61 16 26 H 0.08 1.91 7.44 -51.92 -0.39 1.53 16 27 H 0.08 2.10 8.14 -51.92 -0.42 1.68 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.77 16 29 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 291.48 15.07 4.39 4.39 Total: -1.00 -34.21 291.48 -7.80 -42.01 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.08 Total: 5.46 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 0.41 Total: -22.96 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.59 Total: -50.05 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -2.02 Total: -48.77 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 57.00 SS G_CDS: -3.07 Total: 53.93 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.21 -7.80 -42.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579614512.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.989 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds