Wall clock time and date at job start Mon Mar 30 2020 01:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99850 * 2 1 4 4 H 1.48502 * 109.47038 * 270.00270 * 3 2 1 5 5 H 1.48503 * 109.46876 * 29.99706 * 3 2 1 6 6 H 1.48499 * 109.47187 * 150.00047 * 3 2 1 7 7 C 1.37870 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99754 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00362 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.47247 * 299.99968 * 9 7 2 11 11 O 1.42896 * 109.47292 * 59.99857 * 9 7 2 12 12 C 1.53002 * 109.47353 * 180.02562 * 9 7 2 13 13 S 1.81402 * 109.46993 * 179.97438 * 12 9 7 14 14 C 1.76203 * 102.99967 * 179.97438 * 13 12 9 15 15 C 1.38982 * 120.05609 * 179.97438 * 14 13 12 16 16 C 1.38097 * 119.97907 * 179.71792 * 15 14 13 17 17 C 1.38363 * 120.09122 * 0.30492 * 16 15 14 18 18 Cl 1.73594 * 119.94543 * 179.97438 * 17 16 15 19 19 C 1.38606 * 120.11258 * 359.97438 * 17 16 15 20 20 F 1.35099 * 119.98938 * 180.02562 * 19 17 16 21 21 C 1.38313 * 120.01787 * 359.97128 * 19 17 16 22 22 H 0.97004 * 120.00611 * 0.02562 * 1 2 3 23 23 H 0.96703 * 114.00366 * 60.00277 * 11 9 7 24 24 H 1.09001 * 109.47026 * 59.99921 * 12 9 7 25 25 H 1.08992 * 109.46791 * 299.99729 * 12 9 7 26 26 H 1.08002 * 120.01309 * 0.02562 * 15 14 13 27 27 H 1.07994 * 119.95217 * 180.27538 * 16 15 14 28 28 H 1.08000 * 120.04815 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 1 3.8752 -0.6803 -0.8888 11 8 3.9874 -0.5200 1.1679 12 6 4.0216 -2.6364 0.0010 13 16 5.8356 -2.6363 0.0009 14 6 6.2321 -4.3531 0.0016 15 6 7.5608 -4.7607 0.0011 16 6 7.8697 -6.1066 0.0075 17 6 6.8581 -7.0506 0.0080 18 17 7.2508 -8.7415 0.0153 19 6 5.5317 -6.6484 0.0025 20 9 4.5459 -7.5722 0.0035 21 6 5.2171 -5.3015 -0.0027 22 1 -0.4851 0.8400 -0.0004 23 1 3.7018 -0.9233 1.9991 24 1 3.6586 -3.1501 -0.8892 25 1 3.6580 -3.1504 0.8907 26 1 8.3515 -4.0250 0.0008 27 1 8.9023 -6.4228 0.0117 28 1 4.1837 -4.9876 -0.0065 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593437259.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:06 Heat of formation + Delta-G solvation = -79.191752 kcal Electronic energy + Delta-G solvation = -16126.769785 eV Core-core repulsion = 13016.336870 eV Total energy + Delta-G solvation = -3110.432915 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.013 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.08141 -39.08371 -36.69406 -36.48999 -32.42065 -31.53121 -30.59459 -30.04126 -25.86687 -23.41182 -23.03073 -20.98118 -18.42125 -17.65982 -16.78295 -16.70115 -15.89958 -15.78761 -15.06399 -14.78350 -14.66529 -14.11315 -13.98000 -13.36350 -13.27655 -12.89966 -12.55873 -12.30387 -11.95586 -11.70510 -11.54885 -11.16895 -11.06418 -10.58995 -10.33482 -9.95729 -9.60424 -9.23473 -9.11120 -8.79938 -8.53558 -7.32496 -6.27748 -4.42629 0.68134 0.87972 1.57221 1.87623 2.61789 3.16352 3.30318 3.40551 3.64944 3.93497 4.40558 4.43914 4.80758 4.94791 5.04133 5.18717 5.45449 5.46874 5.53641 5.68962 5.73052 5.78277 5.93749 6.22662 6.41730 6.99962 7.31390 8.10150 8.62575 8.81130 9.33686 10.81900 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.039191 B = 0.003994 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.284648 B = 7009.121196 C = 7630.151721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.088 3.912 3 Si 0.870 3.130 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.216 1.216 7 C -0.566 4.566 8 H 0.075 0.925 9 C 0.212 3.788 10 H 0.067 0.933 11 O -0.574 6.574 12 C -0.120 4.120 13 S -0.085 6.085 14 C -0.049 4.049 15 C -0.108 4.108 16 C -0.063 4.063 17 C -0.094 4.094 18 Cl -0.058 7.058 19 C 0.134 3.866 20 F -0.126 7.126 21 C -0.165 4.165 22 H 0.268 0.732 23 H 0.359 0.641 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.143 0.857 27 H 0.145 0.855 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.224 -11.884 0.489 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.118 4.118 3 Si 0.695 3.305 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.138 1.138 7 C -0.605 4.605 8 H 0.093 0.907 9 C 0.153 3.847 10 H 0.084 0.916 11 O -0.380 6.380 12 C -0.268 4.268 13 S 0.165 5.835 14 C -0.164 4.164 15 C -0.133 4.133 16 C -0.084 4.084 17 C -0.125 4.125 18 Cl -0.029 7.029 19 C 0.112 3.888 20 F -0.104 7.104 21 C -0.191 4.191 22 H 0.078 0.922 23 H 0.206 0.794 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.161 0.839 27 H 0.163 0.837 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 16.006 -10.474 0.046 19.129 hybrid contribution -1.184 -1.129 0.255 1.656 sum 14.822 -11.602 0.301 18.825 Atomic orbital electron populations 1.69928 1.06756 1.27826 1.47613 1.24962 0.94665 0.99991 0.92196 0.87031 0.83084 0.81687 0.78651 1.21137 1.21942 1.13819 1.21305 0.88591 0.95188 1.55447 0.90668 1.19547 0.94204 0.84337 0.86652 0.91584 1.86724 1.77654 1.57249 1.16336 1.24821 0.89838 1.06522 1.05622 1.85924 1.10712 0.97682 1.89175 1.22092 0.95756 0.99229 0.99283 1.20796 0.94821 0.95304 1.02374 1.20849 0.98635 0.91304 0.97609 1.20876 0.92883 0.86603 1.12105 1.98370 1.94121 1.13312 1.97125 1.17246 0.83575 0.86272 1.01754 1.91546 1.60419 1.64935 1.93530 1.21265 1.01056 0.90328 1.06429 0.92240 0.79373 0.89017 0.89469 0.83937 0.83747 0.83342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.96 55.43 0.77 -25.12 15 2 C 0.09 2.41 5.47 -17.82 -0.10 2.31 15 3 Si 0.87 20.78 26.99 -169.99 -4.59 16.19 15 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 6 H -0.22 -5.02 5.31 56.52 0.30 -4.72 15 7 C -0.57 -14.70 9.34 -34.44 -0.32 -15.02 15 8 H 0.08 2.10 7.99 -52.48 -0.42 1.68 15 9 C 0.21 4.55 2.36 -27.88 -0.07 4.49 15 10 H 0.07 1.48 7.57 -51.93 -0.39 1.08 15 11 O -0.57 -12.03 9.74 -35.23 -0.34 -12.37 15 12 C -0.12 -2.09 3.97 37.16 0.15 -1.95 15 13 S -0.08 -1.31 21.57 -107.50 -2.32 -3.62 15 14 C -0.05 -0.66 6.11 -39.06 -0.24 -0.90 15 15 C -0.11 -1.20 9.79 -39.36 -0.39 -1.59 15 16 C -0.06 -0.64 9.82 -39.59 -0.39 -1.03 15 17 C -0.09 -1.11 6.33 -39.40 -0.25 -1.36 15 18 Cl -0.06 -0.64 28.61 -51.86 -1.48 -2.12 15 19 C 0.13 1.79 7.27 -39.42 -0.29 1.50 15 20 F -0.13 -1.78 16.83 2.25 0.04 -1.74 15 21 C -0.16 -2.26 9.34 -39.30 -0.37 -2.63 15 22 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 23 H 0.36 6.62 9.04 45.56 0.41 7.03 15 24 H 0.09 1.57 7.74 -51.92 -0.40 1.17 15 25 H 0.09 1.47 7.76 -51.93 -0.40 1.07 15 26 H 0.14 1.31 8.06 -52.49 -0.42 0.88 15 27 H 0.14 1.05 8.06 -52.49 -0.42 0.63 15 28 H 0.15 2.06 5.88 -52.49 -0.31 1.75 15 LS Contribution 277.40 15.07 4.18 4.18 Total: -1.00 -28.68 277.40 -7.59 -36.27 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -1.60 Total: 4.51 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -2.25 Total: -16.17 kcal Atomic # 7 Polarization: -25.90 SS G_CDS: 0.77 Total: -25.12 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.34 Total: -12.37 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.59 Total: 16.19 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -2.32 Total: -3.62 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.48 Total: -2.12 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.68 -7.59 -36.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593437259.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.924 kcal (2) G-P(sol) polarization free energy of solvation -28.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds