Wall clock time and date at job start Mon Mar 30 2020 01:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46819 * 2 1 4 4 C 1.50699 * 109.47057 * 119.99892 * 2 1 3 5 5 C 1.38261 * 120.00205 * 299.97606 * 4 2 1 6 6 C 1.38206 * 120.00080 * 179.97438 * 5 4 2 7 7 C 1.38260 * 119.99896 * 359.78772 * 6 5 4 8 8 C 1.38210 * 119.99838 * 0.49105 * 7 6 5 9 9 C 1.50703 * 119.99845 * 179.76392 * 8 7 6 10 10 H 1.08999 * 109.47040 * 199.73034 * 9 8 7 11 11 C 1.52997 * 109.47440 * 79.72668 * 9 8 7 12 12 N 1.46906 * 109.46953 * 319.72573 * 9 8 7 13 13 C 1.46902 * 110.99573 * 205.00087 * 12 9 8 14 14 C 1.53008 * 109.46622 * 179.97438 * 13 12 9 15 15 C 1.53004 * 109.46689 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46812 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00063 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00212 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00189 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99712 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47426 * 89.99638 * 20 18 16 22 22 H 1.48501 * 109.47045 * 210.00047 * 20 18 16 23 23 H 1.48507 * 109.46759 * 330.00040 * 20 18 16 24 24 C 1.38211 * 120.00105 * 120.00204 * 4 2 1 25 25 H 1.08996 * 109.46767 * 59.99948 * 1 2 3 26 26 H 1.08993 * 109.46950 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47032 * 300.00267 * 1 2 3 28 28 H 1.09001 * 109.47281 * 240.00086 * 2 1 3 29 29 H 1.09004 * 109.46779 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47494 * 299.99607 * 3 2 1 31 31 H 1.08995 * 109.47536 * 60.00042 * 3 2 1 32 32 H 1.08001 * 119.99787 * 0.02562 * 5 4 2 33 33 H 1.07999 * 119.99800 * 180.02562 * 6 5 4 34 34 H 1.08003 * 119.99847 * 180.25640 * 7 6 5 35 35 H 1.09002 * 109.46897 * 59.99415 * 11 9 8 36 36 H 1.08994 * 109.47330 * 180.02562 * 11 9 8 37 37 H 1.09005 * 109.46664 * 300.00064 * 11 9 8 38 38 H 1.00896 * 111.00309 * 81.04499 * 12 9 8 39 39 H 1.08990 * 109.47358 * 299.99539 * 13 12 9 40 40 H 1.09004 * 109.47457 * 60.00221 * 13 12 9 41 41 H 1.09006 * 109.47203 * 299.99590 * 14 13 12 42 42 H 1.08995 * 109.47152 * 60.00028 * 14 13 12 43 43 H 1.09006 * 109.46807 * 299.99641 * 15 14 13 44 44 H 1.08995 * 109.47458 * 60.00024 * 15 14 13 45 45 H 0.96997 * 120.00150 * 179.97438 * 19 18 16 46 46 H 1.08005 * 119.99518 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6988 -0.2377 2.4862 6 6 2.1590 -0.8896 3.6147 7 6 2.9494 -2.0168 3.4878 8 6 3.2876 -2.4859 2.2325 9 6 4.1536 -3.7116 2.0942 10 1 4.5982 -3.7319 1.0993 11 6 3.2998 -4.9649 2.2971 12 7 5.2183 -3.6755 3.1057 13 6 6.3817 -4.4614 2.6735 14 6 7.4673 -4.3995 3.7500 15 6 8.6793 -5.2176 3.2996 16 6 9.7482 -5.1572 4.3601 17 1 9.5802 -4.5915 5.2647 18 6 10.9409 -5.8240 4.1757 19 7 11.8739 -5.7709 5.1010 20 14 11.2313 -6.8030 2.6115 21 1 11.8495 -5.9252 1.5857 22 1 12.1397 -7.9414 2.9015 23 1 9.9353 -7.3208 2.1038 24 6 2.8270 -1.8341 1.1037 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.0778 0.6404 2.5853 33 1 1.8981 -0.5206 4.5956 34 1 3.3056 -2.5286 4.3697 35 1 2.5097 -4.9916 1.5466 36 1 3.9261 -5.8513 2.1975 37 1 2.8552 -4.9444 3.2921 38 1 4.8783 -3.9949 4.0003 39 1 6.0825 -5.4979 2.5180 40 1 6.7711 -4.0518 1.7415 41 1 7.7665 -3.3629 3.9052 42 1 7.0783 -4.8089 4.6823 43 1 8.3804 -6.2543 3.1442 44 1 9.0682 -4.8079 2.3675 45 1 12.7128 -6.2403 4.9714 46 1 3.0876 -2.2033 0.1227 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599027433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:56 Heat of formation + Delta-G solvation = -10.181565 kcal Electronic energy + Delta-G solvation = -20523.182387 eV Core-core repulsion = 17604.100207 eV Total energy + Delta-G solvation = -2919.082180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.90908 -37.38162 -35.39899 -33.90601 -32.20400 -30.78571 -29.80630 -28.75096 -27.41520 -26.22582 -24.05238 -23.00477 -21.94165 -21.63202 -20.16366 -19.12228 -16.93396 -16.63549 -15.86584 -15.42188 -15.09828 -14.71490 -14.41182 -14.12912 -13.89357 -13.69802 -13.63468 -13.35843 -13.04757 -12.70570 -12.56680 -12.25272 -12.15009 -12.09940 -11.99858 -11.64694 -11.53735 -11.36196 -11.13815 -10.97108 -10.78020 -10.74301 -10.68643 -9.93803 -9.71024 -9.56567 -9.14938 -8.83713 -8.60413 -8.51236 -8.21008 -6.01524 -3.99110 1.35226 1.37681 3.32289 3.39267 3.42899 3.70579 4.26237 4.47401 4.51381 4.58138 4.79309 4.90709 4.93928 5.04451 5.09709 5.19186 5.23562 5.32360 5.33720 5.39291 5.43033 5.52720 5.54486 5.58348 5.67457 5.74184 5.76627 5.83434 5.91095 5.96524 6.00078 6.02937 6.08915 6.20184 6.47263 6.50013 6.56758 6.58977 6.68810 6.94374 6.98979 7.24600 7.37223 7.46436 7.57642 7.83136 8.57909 9.04189 9.61131 11.12095 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.029603 B = 0.002748 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.613610 B =10187.887354 C =10257.514448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.079 4.079 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.102 4.102 8 C -0.057 4.057 9 C 0.119 3.881 10 H 0.084 0.916 11 C -0.177 4.177 12 N -0.681 5.681 13 C 0.057 3.943 14 C -0.099 4.099 15 C -0.013 4.013 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 C -0.116 4.116 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.339 0.661 39 H 0.025 0.975 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.013 0.987 44 H 0.011 0.989 45 H 0.262 0.738 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.182 9.856 -9.772 28.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.079 4.079 5 C -0.141 4.141 6 C -0.137 4.137 7 C -0.120 4.120 8 C -0.058 4.058 9 C 0.009 3.991 10 H 0.102 0.898 11 C -0.236 4.236 12 N -0.312 5.312 13 C -0.071 4.071 14 C -0.137 4.137 15 C -0.051 4.051 16 C -0.556 4.556 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.134 4.134 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.157 0.843 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.031 0.969 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -24.726 10.383 -9.952 28.604 hybrid contribution 0.051 -1.462 -0.584 1.575 sum -24.675 8.921 -10.535 28.274 Atomic orbital electron populations 1.21848 0.94503 1.01909 1.01760 1.20113 0.95778 0.96073 0.95532 1.21854 1.01461 0.95087 1.01724 1.19746 0.97928 0.95654 0.94542 1.20874 1.01021 1.00115 0.92048 1.21107 0.98270 0.96007 0.98338 1.20914 0.97356 0.96536 0.97189 1.19789 0.96525 0.96336 0.93153 1.20464 0.90539 0.91038 0.97096 0.89822 1.22477 1.00545 0.98221 1.02312 1.60636 1.06782 1.58987 1.04767 1.22185 0.90693 0.94319 0.99939 1.21442 0.94566 1.01326 0.96385 1.19541 0.93665 0.94913 0.96942 1.21157 0.98565 1.31473 1.04425 0.91033 1.25049 0.95973 0.96212 0.96408 1.69917 1.06595 1.43750 1.34146 0.86762 0.78298 0.80049 0.84056 1.20306 1.21453 1.19099 1.20871 0.98805 0.95726 0.98035 0.92539 0.92610 0.92511 0.90630 0.92388 0.92550 0.92494 0.86643 0.86363 0.86159 0.92157 0.92106 0.92274 0.84252 0.95663 0.91513 0.91956 0.93050 0.96885 0.97076 0.92794 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.01 37.16 0.33 -0.64 16 2 C -0.06 -0.45 3.09 -91.77 -0.28 -0.74 16 3 C -0.14 -1.07 9.01 37.16 0.33 -0.74 16 4 C -0.08 -0.79 4.78 -104.62 -0.50 -1.29 16 5 C -0.12 -1.21 8.71 -39.58 -0.34 -1.56 16 6 C -0.12 -1.25 10.05 -39.59 -0.40 -1.64 16 7 C -0.10 -1.17 9.32 -39.58 -0.37 -1.54 16 8 C -0.06 -0.68 4.95 -104.63 -0.52 -1.20 16 9 C 0.12 1.43 2.79 -68.86 -0.19 1.23 16 10 H 0.08 1.02 7.66 -51.93 -0.40 0.62 16 11 C -0.18 -1.85 9.14 37.16 0.34 -1.51 16 12 N -0.68 -9.55 5.71 -107.94 -0.62 -10.17 16 13 C 0.06 0.93 5.48 -3.82 -0.02 0.91 16 14 C -0.10 -1.99 5.41 -26.72 -0.14 -2.13 16 15 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 16 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 17 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -28.37 13.96 55.43 0.77 -27.59 16 20 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 24 C -0.12 -1.27 9.29 -39.59 -0.37 -1.64 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.38 7.39 -51.93 -0.38 -0.01 16 28 H 0.08 0.58 7.88 -51.93 -0.41 0.17 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 32 H 0.12 0.94 7.10 -52.49 -0.37 0.57 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.12 1.33 7.26 -52.48 -0.38 0.95 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 37 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 38 H 0.34 4.45 7.82 -39.29 -0.31 4.15 16 39 H 0.03 0.40 7.43 -51.93 -0.39 0.01 16 40 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 44 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 45 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.12 1.14 7.93 -52.48 -0.42 0.72 16 LS Contribution 365.72 15.07 5.51 5.51 Total: -1.00 -31.09 365.72 -10.07 -41.16 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -8.40 Total: 0.22 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -2.67 Total: -26.52 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.16 Total: -37.76 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.09 -10.07 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599027433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.981 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds