Wall clock time and date at job start Mon Mar 30 2020 01:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46819 * 2 1 4 4 C 1.50699 * 109.47057 * 119.99892 * 2 1 3 5 5 C 1.38261 * 120.00205 * 299.97606 * 4 2 1 6 6 C 1.38206 * 120.00080 * 179.97438 * 5 4 2 7 7 C 1.38260 * 119.99896 * 359.78772 * 6 5 4 8 8 C 1.38210 * 119.99838 * 0.49105 * 7 6 5 9 9 C 1.50703 * 119.99845 * 179.76392 * 8 7 6 10 10 H 1.08999 * 109.47040 * 199.73034 * 9 8 7 11 11 C 1.52997 * 109.47440 * 79.72668 * 9 8 7 12 12 N 1.46906 * 109.46953 * 319.72573 * 9 8 7 13 13 C 1.46902 * 110.99573 * 205.00087 * 12 9 8 14 14 C 1.53008 * 109.46622 * 179.97438 * 13 12 9 15 15 C 1.53004 * 109.46689 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46812 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00063 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00212 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00189 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99712 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47426 * 89.99638 * 20 18 16 22 22 H 1.48501 * 109.47045 * 210.00047 * 20 18 16 23 23 H 1.48507 * 109.46759 * 330.00040 * 20 18 16 24 24 C 1.38211 * 120.00105 * 120.00204 * 4 2 1 25 25 H 1.08996 * 109.46767 * 59.99948 * 1 2 3 26 26 H 1.08993 * 109.46950 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47032 * 300.00267 * 1 2 3 28 28 H 1.09001 * 109.47281 * 240.00086 * 2 1 3 29 29 H 1.09004 * 109.46779 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47494 * 299.99607 * 3 2 1 31 31 H 1.08995 * 109.47536 * 60.00042 * 3 2 1 32 32 H 1.08001 * 119.99787 * 0.02562 * 5 4 2 33 33 H 1.07999 * 119.99800 * 180.02562 * 6 5 4 34 34 H 1.08003 * 119.99847 * 180.25640 * 7 6 5 35 35 H 1.09002 * 109.46897 * 59.99415 * 11 9 8 36 36 H 1.08994 * 109.47330 * 180.02562 * 11 9 8 37 37 H 1.09005 * 109.46664 * 300.00064 * 11 9 8 38 38 H 1.00896 * 111.00309 * 81.04499 * 12 9 8 39 39 H 1.08990 * 109.47358 * 299.99539 * 13 12 9 40 40 H 1.09004 * 109.47457 * 60.00221 * 13 12 9 41 41 H 1.09006 * 109.47203 * 299.99590 * 14 13 12 42 42 H 1.08995 * 109.47152 * 60.00028 * 14 13 12 43 43 H 1.09006 * 109.46807 * 299.99641 * 15 14 13 44 44 H 1.08995 * 109.47458 * 60.00024 * 15 14 13 45 45 H 0.96997 * 120.00150 * 179.97438 * 19 18 16 46 46 H 1.08005 * 119.99518 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6988 -0.2377 2.4862 6 6 2.1590 -0.8896 3.6147 7 6 2.9494 -2.0168 3.4878 8 6 3.2876 -2.4859 2.2325 9 6 4.1536 -3.7116 2.0942 10 1 4.5982 -3.7319 1.0993 11 6 3.2998 -4.9649 2.2971 12 7 5.2183 -3.6755 3.1057 13 6 6.3817 -4.4614 2.6735 14 6 7.4673 -4.3995 3.7500 15 6 8.6793 -5.2176 3.2996 16 6 9.7482 -5.1572 4.3601 17 1 9.5802 -4.5915 5.2647 18 6 10.9409 -5.8240 4.1757 19 7 11.8739 -5.7709 5.1010 20 14 11.2313 -6.8030 2.6115 21 1 11.8495 -5.9252 1.5857 22 1 12.1397 -7.9414 2.9015 23 1 9.9353 -7.3208 2.1038 24 6 2.8270 -1.8341 1.1037 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.0778 0.6404 2.5853 33 1 1.8981 -0.5206 4.5956 34 1 3.3056 -2.5286 4.3697 35 1 2.5097 -4.9916 1.5466 36 1 3.9261 -5.8513 2.1975 37 1 2.8552 -4.9444 3.2921 38 1 4.8783 -3.9949 4.0003 39 1 6.0825 -5.4979 2.5180 40 1 6.7711 -4.0518 1.7415 41 1 7.7665 -3.3629 3.9052 42 1 7.0783 -4.8089 4.6823 43 1 8.3804 -6.2543 3.1442 44 1 9.0682 -4.8079 2.3675 45 1 12.7128 -6.2403 4.9714 46 1 3.0876 -2.2033 0.1227 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599027433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:56 Heat of formation + Delta-G solvation = -26.608588 kcal Electronic energy + Delta-G solvation = -20523.894716 eV Core-core repulsion = 17604.100207 eV Total energy + Delta-G solvation = -2919.794509 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.71079 -38.40349 -36.40517 -35.45583 -33.96559 -31.98389 -30.81118 -29.68826 -27.95495 -27.88189 -24.95676 -24.21307 -23.13266 -22.50053 -21.83816 -19.95895 -18.91742 -17.64070 -16.83404 -16.48587 -16.29199 -16.10437 -15.61449 -15.25268 -14.76927 -14.73018 -14.57781 -14.37765 -14.31476 -13.95115 -13.74458 -13.43637 -13.16604 -13.06584 -12.82769 -12.78245 -12.67529 -12.51194 -12.40907 -11.97853 -11.91851 -11.79308 -11.65500 -11.47745 -11.45037 -11.37523 -11.19189 -10.76514 -9.66151 -9.43148 -9.28412 -8.29416 -6.33768 0.53755 0.57202 1.35963 1.37851 1.50068 2.36446 2.87723 3.05735 3.25161 3.75508 3.86382 4.03378 4.08755 4.19579 4.24943 4.34307 4.35485 4.37135 4.40902 4.54168 4.63548 4.66036 4.69603 4.76293 4.82849 4.83218 4.95689 4.98143 5.01411 5.02695 5.11566 5.14566 5.17990 5.23385 5.31218 5.37330 5.41227 5.51174 5.61188 5.66303 5.68222 5.74036 5.81385 6.13944 6.21964 6.30052 6.47294 6.74605 7.30722 8.87665 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.029603 B = 0.002748 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.613610 B =10187.887354 C =10257.514448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.081 4.081 5 C -0.127 4.127 6 C -0.126 4.126 7 C -0.119 4.119 8 C -0.070 4.070 9 C 0.122 3.878 10 H 0.082 0.918 11 C -0.170 4.170 12 N -0.688 5.688 13 C 0.072 3.928 14 C -0.090 4.090 15 C -0.010 4.010 16 C -0.534 4.534 17 H 0.028 0.972 18 C 0.000 4.000 19 N -0.953 5.953 20 Si 0.955 3.045 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.244 1.244 24 C -0.129 4.129 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.343 0.657 39 H 0.035 0.965 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.021 0.979 44 H 0.018 0.982 45 H 0.266 0.734 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.992 9.762 -12.006 31.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.081 4.081 5 C -0.145 4.145 6 C -0.144 4.144 7 C -0.137 4.137 8 C -0.070 4.070 9 C 0.012 3.988 10 H 0.101 0.899 11 C -0.229 4.229 12 N -0.319 5.319 13 C -0.057 4.057 14 C -0.128 4.128 15 C -0.048 4.048 16 C -0.572 4.572 17 H 0.047 0.953 18 C -0.196 4.196 19 N -0.594 5.594 20 Si 0.778 3.222 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.168 1.168 24 C -0.147 4.147 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.162 0.838 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.039 0.961 44 H 0.036 0.964 45 H 0.075 0.925 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -26.566 10.300 -12.185 30.989 hybrid contribution 0.587 -1.332 0.210 1.471 sum -25.980 8.968 -11.975 29.980 Atomic orbital electron populations 1.21824 0.93466 1.01882 1.02542 1.20158 0.96586 0.96119 0.94627 1.21844 1.00679 0.94887 1.02563 1.20031 0.97280 0.95316 0.95498 1.21132 1.00935 1.00534 0.91850 1.21359 0.97918 0.95701 0.99445 1.21031 0.98193 0.97314 0.97176 1.19831 0.97031 0.96566 0.93609 1.20461 0.90106 0.92017 0.96204 0.89949 1.22401 1.00494 0.97150 1.02827 1.60550 1.07078 1.58623 1.05618 1.21900 0.90334 0.95321 0.98180 1.21260 0.94488 0.99468 0.97616 1.19487 0.93692 0.96082 0.95499 1.21526 1.00438 1.30832 1.04390 0.95330 1.26095 0.95526 0.97532 1.00495 1.70079 1.07387 1.45178 1.36775 0.85586 0.79179 0.78363 0.79061 1.19163 1.20940 1.16772 1.21065 0.99227 0.96203 0.98230 0.91253 0.93039 0.92264 0.90416 0.93581 0.91158 0.92253 0.84899 0.84826 0.86294 0.91080 0.92371 0.92062 0.83765 0.94635 0.91402 0.93565 0.93439 0.96065 0.96352 0.92503 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.01 71.98 0.65 -0.96 16 2 C -0.06 -0.80 3.09 -11.54 -0.04 -0.83 16 3 C -0.14 -1.86 9.01 71.98 0.65 -1.21 16 4 C -0.08 -1.51 4.78 -19.87 -0.09 -1.60 16 5 C -0.13 -2.31 8.71 22.27 0.19 -2.11 16 6 C -0.13 -2.50 10.05 22.27 0.22 -2.27 16 7 C -0.12 -2.66 9.32 22.27 0.21 -2.45 16 8 C -0.07 -1.58 4.95 -19.87 -0.10 -1.68 16 9 C 0.12 2.76 2.79 44.17 0.12 2.88 16 10 H 0.08 1.88 7.66 -2.39 -0.02 1.86 16 11 C -0.17 -3.27 9.14 71.98 0.66 -2.62 16 12 N -0.69 -18.60 5.71 -495.43 -2.83 -21.43 16 13 C 0.07 2.22 5.48 86.31 0.47 2.69 16 14 C -0.09 -3.60 5.41 30.60 0.17 -3.44 16 15 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 16 C -0.53 -31.74 9.66 25.60 0.25 -31.49 16 17 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 18 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 19 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 20 Si 0.96 44.91 27.47 68.60 1.88 46.79 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.24 -10.55 6.54 99.48 0.65 -9.90 16 24 C -0.13 -2.68 9.29 22.27 0.21 -2.47 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.65 7.39 -2.39 -0.02 0.63 16 28 H 0.08 1.06 7.88 -2.39 -0.02 1.04 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.74 7.39 -2.39 -0.02 0.72 16 32 H 0.13 1.89 7.10 -2.91 -0.02 1.87 16 33 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.12 2.59 7.26 -2.91 -0.02 2.57 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.15 7.45 -2.39 -0.02 1.13 16 37 H 0.06 1.15 8.13 -2.38 -0.02 1.13 16 38 H 0.34 8.76 7.82 -89.70 -0.70 8.05 16 39 H 0.04 1.04 7.43 -2.39 -0.02 1.02 16 40 H 0.07 2.11 8.06 -2.38 -0.02 2.09 16 41 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.02 0.97 7.20 -2.38 -0.02 0.96 16 44 H 0.02 0.84 7.57 -2.39 -0.02 0.83 16 45 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 46 H 0.13 2.28 7.93 -2.91 -0.02 2.26 16 Total: -1.00 -67.37 365.72 3.67 -63.71 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.16 Total: 19.23 kcal Atomic # 6 Polarization: -51.59 SS G_CDS: 4.15 Total: -47.44 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -2.53 Total: -82.29 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -67.37 3.67 -63.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599027433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.097 kcal (2) G-P(sol) polarization free energy of solvation -67.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds