Wall clock time and date at job start Mon Mar 30 2020 01:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47193 * 2 1 4 4 C 1.50701 * 109.47479 * 120.00185 * 2 1 3 5 5 C 1.38255 * 120.00219 * 300.00181 * 4 2 1 6 6 C 1.38212 * 120.00284 * 180.02562 * 5 4 2 7 7 C 1.38253 * 119.99859 * 0.02562 * 6 5 4 8 8 C 1.38215 * 120.00294 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00248 * 179.70563 * 8 7 6 10 10 H 1.08994 * 109.46875 * 160.00370 * 9 8 7 11 11 C 1.53001 * 109.46861 * 279.99771 * 9 8 7 12 12 N 1.46889 * 109.47161 * 39.99698 * 9 8 7 13 13 C 1.46899 * 111.00018 * 155.00339 * 12 9 8 14 14 C 1.53000 * 109.47270 * 180.02562 * 13 12 9 15 15 C 1.53003 * 109.47534 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47712 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99728 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00100 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99838 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99899 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47179 * 90.00096 * 20 18 16 22 22 H 1.48505 * 109.46466 * 209.99853 * 20 18 16 23 23 H 1.48500 * 109.47249 * 329.99877 * 20 18 16 24 24 C 1.38217 * 120.00041 * 119.99398 * 4 2 1 25 25 H 1.09001 * 109.47513 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47274 * 299.99642 * 1 2 3 27 27 H 1.09005 * 109.47353 * 59.99542 * 1 2 3 28 28 H 1.08998 * 109.47274 * 240.00358 * 2 1 3 29 29 H 1.09000 * 109.47269 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47215 * 300.00213 * 3 2 1 31 31 H 1.09006 * 109.46411 * 60.00587 * 3 2 1 32 32 H 1.08000 * 119.99755 * 359.97438 * 5 4 2 33 33 H 1.08002 * 119.99776 * 179.97438 * 6 5 4 34 34 H 1.08000 * 120.00399 * 179.97438 * 7 6 5 35 35 H 1.08998 * 109.47159 * 300.00374 * 11 9 8 36 36 H 1.09005 * 109.46972 * 59.99874 * 11 9 8 37 37 H 1.08994 * 109.47105 * 180.02562 * 11 9 8 38 38 H 1.00901 * 111.00522 * 278.95329 * 12 9 8 39 39 H 1.08998 * 109.46948 * 299.99813 * 13 12 9 40 40 H 1.08992 * 109.47236 * 59.99955 * 13 12 9 41 41 H 1.09006 * 109.46970 * 300.00046 * 14 13 12 42 42 H 1.08999 * 109.47372 * 60.00027 * 14 13 12 43 43 H 1.09000 * 109.46985 * 300.00510 * 15 14 13 44 44 H 1.09003 * 109.46996 * 59.99270 * 15 14 13 45 45 H 0.96995 * 119.99501 * 180.02562 * 19 18 16 46 46 H 1.08001 * 119.99701 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6984 -0.2382 2.4862 6 6 2.1596 -0.8894 3.6146 7 6 2.9554 -2.0128 3.4877 8 6 3.2893 -2.4850 2.2323 9 6 4.1622 -3.7057 2.0940 10 1 4.0332 -4.1337 1.0999 11 6 5.6268 -3.3105 2.2929 12 7 3.7807 -4.6979 3.1077 13 6 4.1400 -6.0555 2.6769 14 6 3.7275 -7.0589 3.7558 15 6 4.1011 -8.4731 3.3068 16 6 3.6954 -9.4613 4.3697 17 1 3.2191 -9.1153 5.2751 18 6 3.9323 -10.8071 4.1863 19 7 3.5786 -11.6695 5.1141 20 14 4.7568 -11.4054 2.6205 21 1 6.2291 -11.4261 2.8131 22 1 4.2799 -12.7753 2.3024 23 1 4.4168 -10.4905 1.5013 24 6 2.8269 -1.8343 1.1035 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.0778 0.6401 2.5853 33 1 1.8990 -0.5202 4.5956 34 1 3.3162 -2.5215 4.3694 35 1 5.9098 -2.5741 1.5407 36 1 5.7558 -2.8823 3.2870 37 1 6.2582 -4.1932 2.1924 38 1 4.1962 -4.4803 4.0011 39 1 3.6231 -6.2901 1.7464 40 1 5.2169 -6.1136 2.5190 41 1 4.2440 -6.8244 4.6866 42 1 2.6505 -7.0008 3.9133 43 1 3.5843 -8.7072 2.3761 44 1 5.1781 -8.5315 3.1489 45 1 3.7456 -12.6162 4.9852 46 1 3.0880 -2.2030 0.1226 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599027436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:59 Heat of formation + Delta-G solvation = -10.169386 kcal Electronic energy + Delta-G solvation = -20522.576494 eV Core-core repulsion = 17603.494842 eV Total energy + Delta-G solvation = -2919.081652 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.90894 -37.38325 -35.39935 -33.90655 -32.20396 -30.78555 -29.80497 -28.75287 -27.41508 -26.22698 -24.05160 -23.00605 -21.94081 -21.63211 -20.16378 -19.12232 -16.93337 -16.63515 -15.86654 -15.42664 -15.10022 -14.71863 -14.39632 -14.13334 -13.88784 -13.69850 -13.64310 -13.36041 -13.05418 -12.70270 -12.56718 -12.26112 -12.15207 -12.09373 -11.94384 -11.65452 -11.60020 -11.36339 -11.13771 -10.95656 -10.76814 -10.74185 -10.68623 -9.93343 -9.72100 -9.56252 -9.14968 -8.83676 -8.60373 -8.51231 -8.21132 -6.01556 -3.99128 1.35229 1.37680 3.31872 3.39249 3.43305 3.70626 4.26091 4.47409 4.51327 4.58123 4.79312 4.90730 4.93922 5.04444 5.09738 5.19160 5.23558 5.32337 5.33664 5.39348 5.43023 5.52696 5.54425 5.58278 5.67421 5.74205 5.76634 5.83332 5.91054 5.96479 6.00012 6.02921 6.08928 6.20151 6.47200 6.49994 6.56750 6.59283 6.68836 6.93870 6.98980 7.24443 7.38089 7.46190 7.57475 7.83165 8.57926 9.04184 9.61127 11.12076 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.029704 B = 0.002746 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.412304 B =10195.567107 C =10265.509877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.079 4.079 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.102 4.102 8 C -0.057 4.057 9 C 0.119 3.881 10 H 0.084 0.916 11 C -0.177 4.177 12 N -0.681 5.681 13 C 0.057 3.943 14 C -0.099 4.099 15 C -0.013 4.013 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.266 1.266 24 C -0.116 4.116 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.339 0.661 39 H 0.066 0.934 40 H 0.025 0.975 41 H 0.050 0.950 42 H 0.062 0.938 43 H 0.015 0.985 44 H 0.008 0.992 45 H 0.262 0.738 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 27.019 -9.831 28.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.079 4.079 5 C -0.141 4.141 6 C -0.137 4.137 7 C -0.120 4.120 8 C -0.058 4.058 9 C 0.009 3.991 10 H 0.102 0.898 11 C -0.235 4.235 12 N -0.312 5.312 13 C -0.071 4.071 14 C -0.137 4.137 15 C -0.051 4.051 16 C -0.556 4.556 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.134 4.134 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.157 0.843 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.034 0.966 44 H 0.027 0.973 45 H 0.072 0.928 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.735 26.761 -10.012 28.625 hybrid contribution 1.401 -0.526 -0.567 1.601 sum -0.334 26.235 -10.579 28.289 Atomic orbital electron populations 1.21853 0.94373 1.02175 1.01724 1.20110 0.95955 0.95895 0.95533 1.21851 1.01170 0.95242 1.01758 1.19746 0.97852 0.95736 0.94541 1.20874 1.00894 1.00240 0.92048 1.21108 0.98231 0.96059 0.98337 1.20914 0.98187 0.95687 0.97200 1.19793 0.97387 0.95476 0.93155 1.20460 0.91378 0.90226 0.97072 0.89823 1.22477 0.96867 1.01888 1.02318 1.60632 1.63868 1.01901 1.04773 1.22182 0.97643 0.87358 0.99949 1.21440 1.01357 0.94573 0.96349 1.19541 0.95797 0.92468 0.97254 1.21156 1.39476 0.90759 1.04220 0.91033 1.25050 0.95337 0.96893 0.96369 1.69922 1.48139 1.02341 1.34007 0.86763 0.79871 0.77996 0.84548 1.20398 1.21418 1.19026 1.20873 0.98694 0.95834 0.98036 0.92388 0.92495 0.92550 0.90632 0.92610 0.92537 0.92511 0.86644 0.86362 0.86143 0.92163 0.92269 0.92106 0.84252 0.91508 0.95670 0.93077 0.91929 0.96638 0.97327 0.92797 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.01 37.15 0.33 -0.74 16 2 C -0.06 -0.45 3.09 -91.77 -0.28 -0.74 16 3 C -0.14 -0.98 9.01 37.16 0.33 -0.64 16 4 C -0.08 -0.79 4.78 -104.62 -0.50 -1.29 16 5 C -0.12 -1.21 8.71 -39.58 -0.34 -1.56 16 6 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 7 C -0.10 -1.17 9.33 -39.58 -0.37 -1.54 16 8 C -0.06 -0.68 4.96 -104.62 -0.52 -1.20 16 9 C 0.12 1.42 2.79 -68.87 -0.19 1.23 16 10 H 0.08 1.02 7.66 -51.93 -0.40 0.62 16 11 C -0.18 -1.85 9.14 37.16 0.34 -1.51 16 12 N -0.68 -9.55 5.70 -107.97 -0.62 -10.17 16 13 C 0.06 0.93 5.48 -3.82 -0.02 0.91 16 14 C -0.10 -1.99 5.41 -26.73 -0.14 -2.13 16 15 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 16 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 17 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -28.37 13.96 55.43 0.77 -27.59 16 20 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 24 C -0.12 -1.27 9.29 -39.58 -0.37 -1.64 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.58 7.88 -51.93 -0.41 0.17 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.38 7.39 -51.93 -0.38 -0.01 16 32 H 0.12 0.94 7.10 -52.49 -0.37 0.57 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.12 1.33 7.24 -52.49 -0.38 0.95 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 37 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 38 H 0.34 4.45 7.82 -39.29 -0.31 4.14 16 39 H 0.07 1.10 8.06 -51.93 -0.42 0.69 16 40 H 0.03 0.39 7.44 -51.93 -0.39 0.01 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 44 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 45 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.12 1.14 7.93 -52.49 -0.42 0.72 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -31.08 365.71 -10.07 -41.16 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -8.40 Total: 0.22 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -2.67 Total: -26.51 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.16 Total: -37.76 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.08 -10.07 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599027436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.988 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds