Wall clock time and date at job start Mon Mar 30 2020 01:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99594 * 2 1 4 4 H 1.48498 * 109.46719 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47087 * 299.99739 * 3 2 1 6 6 H 1.48502 * 109.47302 * 59.99882 * 3 2 1 7 7 C 1.37865 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00151 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00347 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47373 * 179.97438 * 9 7 2 11 11 S 1.81406 * 109.47078 * 180.02562 * 10 9 7 12 12 O 1.42097 * 110.54242 * 68.37978 * 11 10 9 13 13 O 1.42100 * 110.54304 * 291.62695 * 11 10 9 14 14 N 1.65596 * 104.44797 * 180.02562 * 11 10 9 15 15 C 1.46505 * 119.99941 * 65.00238 * 14 11 10 16 16 C 1.50703 * 109.47064 * 164.99860 * 15 14 11 17 17 C 1.35133 * 127.25000 * 89.70713 * 16 15 14 18 18 C 1.37811 * 114.76118 * 179.86903 * 17 16 15 19 19 N 1.30078 * 116.88114 * 0.44083 * 18 17 16 20 20 S 1.69604 * 107.15012 * 359.76528 * 19 18 17 21 21 H 0.97001 * 120.00561 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46718 * 60.00289 * 9 7 2 23 23 H 1.08996 * 109.47439 * 300.00201 * 9 7 2 24 24 H 1.09004 * 109.46523 * 60.00708 * 10 9 7 25 25 H 1.08991 * 109.47592 * 300.00265 * 10 9 7 26 26 H 0.96997 * 120.00145 * 244.99357 * 14 11 10 27 27 H 1.09002 * 109.47068 * 284.99828 * 15 14 11 28 28 H 1.09001 * 109.47372 * 44.99916 * 15 14 11 29 29 H 1.08005 * 122.62203 * 0.03677 * 17 16 15 30 30 H 1.08005 * 121.55893 * 180.21071 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 16 1.3384 -5.2330 0.0021 12 8 0.6640 -5.4199 -1.2346 13 8 0.6650 -5.4195 1.2394 14 7 2.5207 -6.3926 0.0025 15 6 3.4191 -6.5223 1.1524 16 6 4.1392 -7.8442 1.0807 17 6 5.3177 -8.1016 0.4716 18 6 5.7438 -9.4087 0.5679 19 7 4.9725 -10.2326 1.2147 20 16 3.6303 -9.3450 1.7505 21 1 -0.4851 0.8400 -0.0004 22 1 0.6242 -2.5574 -0.8881 23 1 0.6248 -2.5563 0.8919 24 1 2.8726 -3.6038 0.8911 25 1 2.8714 -3.6046 -0.8889 26 1 2.6182 -6.9860 -0.7586 27 1 4.1468 -5.7109 1.1383 28 1 2.8390 -6.4741 2.0740 29 1 5.8830 -7.3418 -0.0477 30 1 6.6728 -9.7345 0.1238 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599367647.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:01 Heat of formation + Delta-G solvation = -68.986778 kcal Electronic energy + Delta-G solvation = -16570.509869 eV Core-core repulsion = 13618.316237 eV Total energy + Delta-G solvation = -2952.193632 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.80871 -38.17344 -37.04048 -36.59541 -35.86010 -33.09162 -32.15448 -27.71838 -27.56133 -24.57663 -23.57422 -20.90801 -20.39158 -19.30918 -18.89710 -18.12439 -17.48100 -17.03100 -16.52996 -16.41752 -15.89485 -15.18156 -15.04376 -14.87178 -14.44382 -14.10053 -13.77967 -13.67654 -13.19733 -13.10611 -12.97714 -12.92629 -12.74340 -12.26911 -12.20891 -12.07705 -11.70518 -11.41817 -11.16294 -10.66345 -10.62850 -10.43265 -9.72992 -8.23415 -6.36944 -0.76276 -0.27018 0.49746 0.92690 1.43920 1.44023 1.52238 1.57167 1.93618 2.40395 2.82273 3.10772 3.24154 3.43603 3.93988 4.06793 4.18359 4.27843 4.43792 4.49620 4.69788 4.82437 4.92050 4.99793 5.31895 5.33393 5.64574 5.72001 6.01261 6.09337 6.77843 7.33536 8.88990 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.033371 B = 0.003853 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.857882 B = 7265.360919 C = 7754.215471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.973 3.027 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.079 0.921 9 C 0.016 3.984 10 C -0.583 4.583 11 S 2.620 3.380 12 O -0.998 6.998 13 O -0.996 6.996 14 N -1.107 6.107 15 C 0.182 3.818 16 C -0.183 4.183 17 C -0.176 4.176 18 C 0.092 3.908 19 N -0.488 5.488 20 S 0.227 5.773 21 H 0.266 0.734 22 H 0.005 0.995 23 H 0.008 0.992 24 H 0.150 0.850 25 H 0.148 0.852 26 H 0.425 0.575 27 H 0.125 0.875 28 H 0.092 0.908 29 H 0.193 0.807 30 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.647 -15.372 1.140 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.797 3.203 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.097 0.903 9 C -0.023 4.023 10 C -0.716 4.716 11 S 2.717 3.283 12 O -0.988 6.988 13 O -0.986 6.986 14 N -0.869 5.869 15 C 0.054 3.946 16 C -0.314 4.314 17 C -0.212 4.212 18 C -0.105 4.105 19 N -0.309 5.309 20 S 0.380 5.620 21 H 0.075 0.925 22 H 0.024 0.976 23 H 0.026 0.974 24 H 0.168 0.832 25 H 0.166 0.834 26 H 0.261 0.739 27 H 0.143 0.857 28 H 0.110 0.890 29 H 0.210 0.790 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 12.463 -17.028 2.347 21.232 hybrid contribution 1.364 2.123 -1.219 2.803 sum 13.827 -14.905 1.127 20.362 Atomic orbital electron populations 1.70108 1.08106 1.28175 1.51152 1.26109 0.95808 1.03890 0.94552 0.85280 0.79317 0.78136 0.77593 1.17661 1.20689 1.20603 1.21570 0.94120 0.90665 1.51048 0.90253 1.18857 0.93767 0.93193 0.96457 1.30310 1.12701 1.15620 1.12975 1.04503 0.74541 0.76541 0.72672 1.93514 1.72843 1.85857 1.46623 1.93509 1.72625 1.85469 1.46963 1.55417 1.52191 1.51262 1.28011 1.19901 0.92829 0.92739 0.89088 1.25423 1.00366 1.01208 1.04441 1.21802 0.96798 0.98726 1.03850 1.23503 1.01181 0.90143 0.95685 1.76867 1.05628 1.28373 1.20020 1.84471 1.27152 0.97002 1.53409 0.92509 0.97630 0.97371 0.83211 0.83414 0.73875 0.85727 0.88955 0.78995 0.76447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.90 13.29 21.44 0.28 -55.61 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 3 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 4 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.54 -28.35 9.11 25.60 0.23 -28.12 16 8 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.02 0.80 4.98 29.85 0.15 0.95 16 10 C -0.58 -19.53 6.01 71.98 0.43 -19.09 16 11 S 2.62 84.90 5.46 -56.49 -0.31 84.59 16 12 O -1.00 -39.58 18.08 -127.65 -2.31 -41.89 16 13 O -1.00 -38.91 17.49 -127.65 -2.23 -41.14 16 14 N -1.11 -23.41 5.88 -190.77 -1.12 -24.53 16 15 C 0.18 3.06 6.70 85.63 0.57 3.64 16 16 C -0.18 -2.95 5.99 24.97 0.15 -2.80 16 17 C -0.18 -2.04 10.17 21.45 0.22 -1.82 16 18 C 0.09 1.18 11.27 84.85 0.96 2.14 16 19 N -0.49 -9.64 12.09 -62.61 -0.76 -10.40 16 20 S 0.23 4.53 23.72 -56.49 -1.34 3.19 16 21 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 22 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 23 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 24 H 0.15 4.07 8.14 -2.39 -0.02 4.05 16 25 H 0.15 4.19 8.14 -2.40 -0.02 4.17 16 26 H 0.43 7.65 8.61 -96.75 -0.83 6.82 16 27 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.09 1.71 7.69 -2.39 -0.02 1.69 16 29 H 0.19 1.03 8.06 -2.91 -0.02 1.00 16 30 H 0.22 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -77.58 295.74 -2.25 -79.82 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 0.33 Total: 6.83 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 3.17 Total: -44.93 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -1.59 Total: -90.54 kcal Atomic # 8 Polarization: -78.49 SS G_CDS: -4.54 Total: -83.03 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 89.43 SS G_CDS: -1.65 Total: 87.78 kcal Total: -77.58 -2.25 -79.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599367647.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.838 kcal (2) G-P(sol) polarization free energy of solvation -77.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds