Wall clock time and date at job start Mon Mar 30 2020 01:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37816 * 121.55950 * 2 1 4 4 C 1.35142 * 114.75868 * 180.21267 * 3 2 1 5 5 S 1.76198 * 127.24702 * 179.86674 * 4 3 2 6 6 O 1.42097 * 106.40433 * 336.16046 * 5 4 3 7 7 O 1.42104 * 106.39730 * 203.24023 * 5 4 3 8 8 N 1.65601 * 107.21866 * 89.70239 * 5 4 3 9 9 C 1.46506 * 120.00130 * 65.00087 * 8 5 4 10 10 H 1.08998 * 109.46566 * 334.99426 * 9 8 5 11 11 C 1.52997 * 109.47289 * 94.99692 * 9 8 5 12 12 C 1.50697 * 109.47015 * 215.00150 * 9 8 5 13 13 H 1.07998 * 120.00039 * 359.97438 * 12 9 8 14 14 C 1.37880 * 119.99815 * 179.97438 * 12 9 8 15 15 N 1.31508 * 119.99915 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99777 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46954 * 59.99790 * 16 14 12 18 18 H 1.48496 * 109.47069 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47158 * 300.00368 * 16 14 12 20 20 S 1.72053 * 105.50097 * 359.59649 * 4 3 2 21 21 N 1.30082 * 121.55774 * 179.74893 * 2 1 3 22 22 H 1.09006 * 109.47308 * 270.23154 * 1 2 3 23 23 H 1.09008 * 109.47164 * 30.22123 * 1 2 3 24 24 H 1.08997 * 109.47673 * 150.22498 * 1 2 3 25 25 H 1.07996 * 122.62038 * 0.02758 * 3 2 1 26 26 H 0.96994 * 119.99752 * 244.99611 * 8 5 4 27 27 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 28 28 H 1.09001 * 109.46832 * 60.00146 * 11 9 8 29 29 H 1.09004 * 109.47261 * 300.00128 * 11 9 8 30 30 H 0.97001 * 119.99839 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2283 1.1743 0.0000 4 6 3.5702 1.0143 -0.0046 5 16 4.7952 2.2807 -0.0092 6 8 4.1761 3.4358 -0.5585 7 8 5.9726 1.6980 -0.5510 8 7 5.1355 2.6394 1.5712 9 6 5.7565 1.6311 2.4339 10 1 5.5239 0.6359 2.0550 11 6 7.2732 1.8318 2.4429 12 6 5.2226 1.7721 3.8361 13 1 4.4941 2.5366 4.0621 14 6 5.6644 0.9251 4.8303 15 7 6.5512 -0.0061 4.5549 16 14 5.0032 1.1004 6.5686 17 1 3.5308 0.9066 6.5600 18 1 5.6325 0.0784 7.4430 19 1 5.3209 2.4562 7.0847 20 16 3.8304 -0.6864 0.0030 21 7 2.1877 -1.1084 0.0049 22 1 -0.3634 0.0042 1.0277 23 1 -0.3634 0.8881 -0.5173 24 1 -0.3634 -0.8919 -0.5103 25 1 1.7579 2.1465 0.0004 26 1 4.9238 3.5170 1.9258 27 1 7.7351 1.0819 3.0851 28 1 7.5057 2.8270 2.8218 29 1 7.6593 1.7298 1.4287 30 1 6.8617 -0.6022 5.2543 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601327626.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:44 Heat of formation + Delta-G solvation = -42.537526 kcal Electronic energy + Delta-G solvation = -17498.275404 eV Core-core repulsion = 14547.228698 eV Total energy + Delta-G solvation = -2951.046706 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.05048 -36.84008 -35.55889 -35.47766 -32.29247 -31.62581 -29.69626 -28.37813 -25.28466 -23.98312 -21.07051 -20.00425 -19.08217 -18.39346 -17.42074 -16.51705 -16.18492 -15.33012 -14.76095 -14.69133 -14.27335 -13.68956 -13.07182 -12.74134 -12.73158 -12.56511 -12.29528 -11.87026 -11.80935 -11.67670 -11.46868 -11.24604 -11.13910 -11.03149 -10.67044 -10.44176 -10.35499 -10.21019 -10.00259 -9.31229 -8.73082 -8.51752 -8.40362 -6.20045 -4.29270 0.31308 0.82113 1.46080 1.87323 2.30153 3.21072 3.26881 3.27754 3.53081 4.06871 4.28586 4.64472 4.97581 5.03205 5.11623 5.17921 5.43074 5.53674 5.62257 5.98469 6.19352 6.57064 6.73682 6.97677 7.01122 7.49089 7.61603 7.70090 7.95614 8.17847 8.73318 9.37586 10.85475 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.016948 B = 0.007755 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.744230 B = 3609.515882 C = 4398.248872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.088 3.912 3 C -0.067 4.067 4 C -0.771 4.771 5 S 2.715 3.285 6 O -0.970 6.970 7 O -0.949 6.949 8 N -1.091 6.091 9 C 0.272 3.728 10 H 0.041 0.959 11 C -0.158 4.158 12 C -0.531 4.531 13 H 0.065 0.935 14 C 0.066 3.934 15 N -0.884 5.884 16 Si 0.900 3.100 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.275 1.275 20 S 0.402 5.598 21 N -0.451 5.451 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.167 0.833 26 H 0.413 0.587 27 H 0.093 0.907 28 H 0.034 0.966 29 H 0.027 0.973 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.189 1.128 -7.192 10.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.107 4.107 4 C -0.982 4.982 5 S 2.796 3.204 6 O -0.960 6.960 7 O -0.939 6.939 8 N -0.855 5.855 9 C 0.168 3.832 10 H 0.059 0.941 11 C -0.218 4.218 12 C -0.570 4.570 13 H 0.083 0.917 14 C -0.137 4.137 15 N -0.521 5.521 16 Si 0.727 3.273 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.201 1.201 20 S 0.560 5.440 21 N -0.277 5.277 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.097 0.903 25 H 0.184 0.816 26 H 0.247 0.753 27 H 0.112 0.888 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.782 -0.970 -7.916 10.469 hybrid contribution -1.770 1.545 1.590 2.837 sum -8.552 0.576 -6.326 10.653 Atomic orbital electron populations 1.20562 0.86227 1.03862 1.03792 1.21653 0.99322 0.88100 0.99733 1.20954 0.90373 1.01248 0.98092 1.37303 1.17452 1.22922 1.20482 1.01491 0.72962 0.72406 0.73528 1.93534 1.78078 1.46567 1.77775 1.93608 1.43733 1.79096 1.77475 1.55566 1.75636 1.24214 1.30034 1.18624 0.90175 0.85009 0.89431 0.94146 1.22241 0.98103 1.01826 0.99621 1.21226 1.25219 1.17767 0.92796 0.91729 1.24912 0.94768 0.94900 0.99145 1.69857 1.29830 1.18665 1.33784 0.86534 0.79113 0.77999 0.83633 1.20233 1.21078 1.20055 1.84048 1.07484 0.91689 1.60817 1.76341 1.02782 1.27588 1.20962 0.89752 0.89937 0.90311 0.81555 0.75259 0.88807 0.94691 0.95421 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.26 36.00 0.37 -0.44 16 2 C 0.09 1.27 6.72 -83.49 -0.56 0.71 16 3 C -0.07 -1.00 9.79 -40.84 -0.40 -1.40 16 4 C -0.77 -13.39 6.47 29.63 0.19 -13.20 16 5 S 2.71 50.13 5.82 -107.50 -0.63 49.50 16 6 O -0.97 -18.29 17.89 -57.17 -1.02 -19.31 16 7 O -0.95 -19.65 17.23 -57.17 -0.99 -20.64 16 8 N -1.09 -21.23 5.46 -5.88 -0.03 -21.26 16 9 C 0.27 6.33 2.76 -69.08 -0.19 6.14 16 10 H 0.04 0.99 7.72 -51.93 -0.40 0.59 16 11 C -0.16 -3.70 9.29 37.16 0.35 -3.35 16 12 C -0.53 -13.35 8.76 -34.44 -0.30 -13.65 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 15 N -0.88 -23.62 11.32 55.43 0.63 -22.99 16 16 Si 0.90 20.09 29.54 -169.99 -5.02 15.06 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 S 0.40 7.03 23.53 -107.50 -2.53 4.50 16 21 N -0.45 -7.45 12.05 32.03 0.39 -7.06 16 22 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.08 0.60 8.12 -51.92 -0.42 0.18 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.17 2.02 8.06 -52.49 -0.42 1.59 16 26 H 0.41 7.14 8.83 -34.47 -0.30 6.84 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.60 7.64 -51.93 -0.40 0.21 16 30 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 290.51 15.07 4.38 4.38 Total: -1.00 -30.17 290.51 -8.54 -38.71 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -3.07 Total: 2.67 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -0.64 Total: -23.57 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.98 Total: -51.31 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -2.01 Total: -39.95 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 57.16 SS G_CDS: -3.16 Total: 54.00 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.17 -8.54 -38.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601327626.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.824 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds