Wall clock time and date at job start Mon Mar 30 2020 01:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37816 * 121.55950 * 2 1 4 4 C 1.35142 * 114.75868 * 180.21267 * 3 2 1 5 5 S 1.76198 * 127.24702 * 179.86674 * 4 3 2 6 6 O 1.42097 * 106.40433 * 336.16046 * 5 4 3 7 7 O 1.42104 * 106.39730 * 203.24023 * 5 4 3 8 8 N 1.65601 * 107.21866 * 89.70239 * 5 4 3 9 9 C 1.46506 * 120.00130 * 65.00087 * 8 5 4 10 10 H 1.08998 * 109.46566 * 334.99426 * 9 8 5 11 11 C 1.52997 * 109.47289 * 94.99692 * 9 8 5 12 12 C 1.50697 * 109.47015 * 215.00150 * 9 8 5 13 13 H 1.07998 * 120.00039 * 359.97438 * 12 9 8 14 14 C 1.37880 * 119.99815 * 179.97438 * 12 9 8 15 15 N 1.31508 * 119.99915 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99777 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46954 * 59.99790 * 16 14 12 18 18 H 1.48496 * 109.47069 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47158 * 300.00368 * 16 14 12 20 20 S 1.72053 * 105.50097 * 359.59649 * 4 3 2 21 21 N 1.30082 * 121.55774 * 179.74893 * 2 1 3 22 22 H 1.09006 * 109.47308 * 270.23154 * 1 2 3 23 23 H 1.09008 * 109.47164 * 30.22123 * 1 2 3 24 24 H 1.08997 * 109.47673 * 150.22498 * 1 2 3 25 25 H 1.07996 * 122.62038 * 0.02758 * 3 2 1 26 26 H 0.96994 * 119.99752 * 244.99611 * 8 5 4 27 27 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 28 28 H 1.09001 * 109.46832 * 60.00146 * 11 9 8 29 29 H 1.09004 * 109.47261 * 300.00128 * 11 9 8 30 30 H 0.97001 * 119.99839 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2283 1.1743 0.0000 4 6 3.5702 1.0143 -0.0046 5 16 4.7952 2.2807 -0.0092 6 8 4.1761 3.4358 -0.5585 7 8 5.9726 1.6980 -0.5510 8 7 5.1355 2.6394 1.5712 9 6 5.7565 1.6311 2.4339 10 1 5.5239 0.6359 2.0550 11 6 7.2732 1.8318 2.4429 12 6 5.2226 1.7721 3.8361 13 1 4.4941 2.5366 4.0621 14 6 5.6644 0.9251 4.8303 15 7 6.5512 -0.0061 4.5549 16 14 5.0032 1.1004 6.5686 17 1 3.5308 0.9066 6.5600 18 1 5.6325 0.0784 7.4430 19 1 5.3209 2.4562 7.0847 20 16 3.8304 -0.6864 0.0030 21 7 2.1877 -1.1084 0.0049 22 1 -0.3634 0.0042 1.0277 23 1 -0.3634 0.8881 -0.5173 24 1 -0.3634 -0.8919 -0.5103 25 1 1.7579 2.1465 0.0004 26 1 4.9238 3.5170 1.9258 27 1 7.7351 1.0819 3.0851 28 1 7.5057 2.8270 2.8218 29 1 7.6593 1.7298 1.4287 30 1 6.8617 -0.6022 5.2543 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601327626.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:43 Heat of formation + Delta-G solvation = -64.962519 kcal Electronic energy + Delta-G solvation = -17499.247825 eV Core-core repulsion = 14547.228698 eV Total energy + Delta-G solvation = -2952.019127 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24752 -38.39103 -37.30884 -37.04268 -34.15637 -32.85827 -30.63996 -30.17874 -27.23549 -25.19338 -22.89431 -21.24404 -20.42379 -19.88090 -19.03886 -18.03845 -17.73143 -17.09871 -16.39078 -15.84762 -15.54539 -15.29973 -14.56677 -14.18919 -14.09011 -13.68050 -13.57336 -13.41574 -13.36887 -13.24859 -13.03350 -12.81176 -12.66952 -12.53604 -12.44302 -12.22437 -12.02992 -11.67105 -11.33061 -11.14444 -10.60331 -10.20407 -9.77364 -8.14112 -6.28987 -0.98387 -0.63402 0.15313 0.63842 1.14639 1.45965 1.46804 1.53972 2.02145 2.44272 2.59657 3.15901 3.37967 3.71610 3.88632 4.34003 4.34757 4.45861 4.70943 4.75493 4.88858 5.09996 5.14987 5.20527 5.45064 5.57814 5.73119 6.02202 6.05156 6.38096 6.81354 7.40907 8.90910 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.016948 B = 0.007755 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.744230 B = 3609.515882 C = 4398.248872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.093 3.907 3 C -0.052 4.052 4 C -0.788 4.788 5 S 2.737 3.263 6 O -0.970 6.970 7 O -0.976 6.976 8 N -1.090 6.090 9 C 0.274 3.726 10 H 0.026 0.974 11 C -0.154 4.154 12 C -0.541 4.541 13 H 0.072 0.928 14 C 0.020 3.980 15 N -0.912 5.912 16 Si 0.958 3.042 17 H -0.272 1.272 18 H -0.287 1.287 19 H -0.268 1.268 20 S 0.344 5.656 21 N -0.460 5.460 22 H 0.098 0.902 23 H 0.114 0.886 24 H 0.086 0.914 25 H 0.201 0.799 26 H 0.422 0.578 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.031 0.969 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.539 2.255 -6.952 12.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.092 4.092 4 C -1.000 5.000 5 S 2.821 3.179 6 O -0.960 6.960 7 O -0.966 6.966 8 N -0.853 5.853 9 C 0.168 3.832 10 H 0.044 0.956 11 C -0.214 4.214 12 C -0.580 4.580 13 H 0.090 0.910 14 C -0.181 4.181 15 N -0.551 5.551 16 Si 0.784 3.216 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.193 1.193 20 S 0.502 5.498 21 N -0.285 5.285 22 H 0.117 0.883 23 H 0.133 0.867 24 H 0.105 0.895 25 H 0.218 0.782 26 H 0.259 0.741 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.110 0.185 -7.681 11.917 hybrid contribution -1.179 1.220 1.447 2.230 sum -10.289 1.405 -6.234 12.112 Atomic orbital electron populations 1.20824 0.82416 1.05932 1.05257 1.22451 1.01570 0.87197 0.97259 1.21512 0.89481 1.03014 0.95240 1.37047 1.18248 1.21930 1.22806 1.00614 0.72545 0.72111 0.72675 1.93528 1.78064 1.46889 1.77529 1.93572 1.45623 1.79574 1.77860 1.55346 1.75887 1.24157 1.29927 1.18373 0.90114 0.85276 0.89399 0.95589 1.22157 0.98390 1.01450 0.99369 1.21566 1.25137 1.17685 0.93642 0.90992 1.25659 0.95075 0.94756 1.02636 1.69984 1.30954 1.19419 1.34700 0.85608 0.78532 0.78002 0.79476 1.19760 1.21299 1.19340 1.84201 1.09569 0.92812 1.63210 1.76481 1.01683 1.28476 1.21849 0.88338 0.86705 0.89497 0.78183 0.74126 0.90960 0.93962 0.95011 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.26 71.23 0.73 -0.54 16 2 C 0.09 2.43 6.72 42.72 0.29 2.71 16 3 C -0.05 -1.42 9.79 21.46 0.21 -1.21 16 4 C -0.79 -26.60 6.47 67.11 0.43 -26.17 16 5 S 2.74 99.01 5.82 -56.49 -0.33 98.68 16 6 O -0.97 -34.78 17.89 -128.00 -2.29 -37.07 16 7 O -0.98 -40.73 17.23 -128.00 -2.21 -42.94 16 8 N -1.09 -41.56 5.46 -172.52 -0.94 -42.51 16 9 C 0.27 12.78 2.76 44.24 0.12 12.90 16 10 H 0.03 1.31 7.72 -2.39 -0.02 1.29 16 11 C -0.15 -7.27 9.29 71.98 0.67 -6.60 16 12 C -0.54 -26.90 8.76 25.60 0.22 -26.67 16 13 H 0.07 3.38 7.81 -2.91 -0.02 3.36 16 14 C 0.02 1.00 5.30 84.66 0.45 1.45 16 15 N -0.91 -49.31 11.32 21.45 0.24 -49.07 16 16 Si 0.96 40.63 29.54 68.60 2.03 42.65 16 17 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 18 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 S 0.34 12.19 23.53 -56.49 -1.33 10.86 16 21 N -0.46 -14.73 12.05 -52.59 -0.63 -15.36 16 22 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.11 1.07 8.12 -2.38 -0.02 1.05 16 24 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 25 H 0.20 3.98 8.06 -2.91 -0.02 3.95 16 26 H 0.42 14.06 8.83 -96.75 -0.85 13.21 16 27 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 28 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.03 1.42 7.64 -2.38 -0.02 1.40 16 30 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -63.87 290.51 -2.01 -65.88 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.32 Total: 13.00 kcal Atomic # 6 Polarization: -47.26 SS G_CDS: 3.13 Total: -44.14 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -1.33 Total: -106.94 kcal Atomic # 8 Polarization: -75.51 SS G_CDS: -4.50 Total: -80.01 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: 111.20 SS G_CDS: -1.66 Total: 109.54 kcal Total: -63.87 -2.01 -65.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601327626.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.921 kcal (2) G-P(sol) polarization free energy of solvation -63.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds