Wall clock time and date at job start Mon Mar 30 2020 01:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37814 * 121.56226 * 2 1 4 4 C 1.35129 * 114.76321 * 180.20639 * 3 2 1 5 5 S 1.76205 * 127.24771 * 179.86477 * 4 3 2 6 6 O 1.42094 * 106.40320 * 336.17016 * 5 4 3 7 7 O 1.42098 * 106.40168 * 203.24699 * 5 4 3 8 8 N 1.65599 * 107.21656 * 89.70953 * 5 4 3 9 9 C 1.46499 * 120.00095 * 65.00006 * 8 5 4 10 10 H 1.08995 * 109.47672 * 25.00148 * 9 8 5 11 11 C 1.52997 * 109.47315 * 264.99725 * 9 8 5 12 12 C 1.50702 * 109.47148 * 145.00156 * 9 8 5 13 13 H 1.08003 * 120.00306 * 5.62444 * 12 9 8 14 14 C 1.37876 * 119.99989 * 185.62504 * 12 9 8 15 15 N 1.31519 * 119.99998 * 197.54612 * 14 12 9 16 16 Si 1.86801 * 120.00122 * 17.54600 * 14 12 9 17 17 H 1.48502 * 109.47191 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47352 * 300.00092 * 16 14 12 19 19 H 1.48497 * 109.47139 * 60.00335 * 16 14 12 20 20 S 1.72055 * 105.50376 * 359.60347 * 4 3 2 21 21 N 1.30087 * 121.56072 * 179.74728 * 2 1 3 22 22 H 1.08998 * 109.47320 * 270.22020 * 1 2 3 23 23 H 1.08992 * 109.47104 * 30.22516 * 1 2 3 24 24 H 1.09004 * 109.46609 * 150.22818 * 1 2 3 25 25 H 1.08004 * 122.61412 * 0.03015 * 3 2 1 26 26 H 0.97004 * 119.99887 * 244.99966 * 8 5 4 27 27 H 1.09007 * 109.46775 * 66.40277 * 11 9 8 28 28 H 1.08999 * 109.47903 * 186.40207 * 11 9 8 29 29 H 1.09006 * 109.47377 * 306.40611 * 11 9 8 30 30 H 0.96994 * 119.99858 * 354.85160 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2283 1.1743 0.0000 4 6 3.5701 1.0143 -0.0044 5 16 4.7952 2.2808 -0.0091 6 8 4.1760 3.4359 -0.5583 7 8 5.9726 1.6982 -0.5508 8 7 5.1355 2.6394 1.5714 9 6 5.7563 1.6312 2.4340 10 1 6.3106 0.9203 1.8213 11 6 4.6701 0.8912 3.2171 12 6 6.6987 2.3057 3.3973 13 1 6.7554 3.3837 3.4319 14 6 7.4886 1.5467 4.2346 15 7 8.0430 2.0966 5.2929 16 14 7.7714 -0.2626 3.8658 17 1 8.6496 -0.8492 4.9097 18 1 6.4688 -0.9756 3.8575 19 1 8.4201 -0.4014 2.5372 20 16 3.8305 -0.6864 0.0030 21 7 2.1879 -1.1084 0.0049 22 1 -0.3634 0.0039 1.0276 23 1 -0.3633 0.8879 -0.5173 24 1 -0.3633 -0.8921 -0.5103 25 1 1.7579 2.1465 0.0005 26 1 4.9237 3.5171 1.9260 27 1 4.0565 0.3111 2.5277 28 1 5.1357 0.2217 3.9404 29 1 4.0440 1.6134 3.7411 30 1 7.9582 3.0509 5.4442 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601327627.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:45 Heat of formation + Delta-G solvation = -39.524634 kcal Electronic energy + Delta-G solvation = -17590.270216 eV Core-core repulsion = 14639.354159 eV Total energy + Delta-G solvation = -2950.916058 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.27210 -36.98694 -35.80986 -35.62783 -32.37630 -31.83712 -29.88139 -29.15806 -24.94318 -24.11197 -20.89836 -20.19582 -19.28475 -18.69340 -17.89271 -16.92325 -16.59691 -15.41100 -14.97468 -14.68527 -14.33535 -13.54816 -13.28540 -13.20872 -12.93724 -12.79961 -12.56222 -12.26408 -11.96334 -11.82304 -11.75041 -11.65306 -11.33924 -11.26475 -10.65268 -10.63449 -10.24577 -10.17217 -9.82786 -9.35433 -8.80565 -8.68017 -8.38020 -6.61952 -4.25572 0.09177 0.63084 1.23208 1.65397 2.09155 3.28383 3.36324 3.39741 3.52955 3.91383 4.36110 4.44904 4.80359 4.82923 5.01540 5.10139 5.26719 5.35053 5.44265 5.80781 5.87188 6.17154 6.28064 6.36440 6.43885 6.97136 7.10144 7.51761 7.85934 8.22481 8.73273 9.42820 10.78295 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.007309 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.899035 B = 3829.984111 C = 4337.608376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.064 4.064 4 C -0.774 4.774 5 S 2.711 3.289 6 O -0.964 6.964 7 O -0.945 6.945 8 N -1.082 6.082 9 C 0.243 3.757 10 H 0.042 0.958 11 C -0.173 4.173 12 C -0.606 4.606 13 H 0.067 0.933 14 C 0.038 3.962 15 N -0.895 5.895 16 Si 1.028 2.972 17 H -0.279 1.279 18 H -0.270 1.270 19 H -0.273 1.273 20 S 0.388 5.612 21 N -0.446 5.446 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.169 0.831 26 H 0.416 0.584 27 H 0.021 0.979 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.358 -3.673 -9.160 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.104 4.104 4 C -0.983 4.983 5 S 2.792 3.208 6 O -0.954 6.954 7 O -0.935 6.935 8 N -0.845 5.845 9 C 0.138 3.862 10 H 0.060 0.940 11 C -0.233 4.233 12 C -0.645 4.645 13 H 0.085 0.915 14 C -0.169 4.169 15 N -0.528 5.528 16 Si 0.855 3.145 17 H -0.205 1.205 18 H -0.196 1.196 19 H -0.199 1.199 20 S 0.546 5.454 21 N -0.272 5.272 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.187 0.813 26 H 0.252 0.748 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.338 -6.970 -9.381 16.283 hybrid contribution -2.169 2.993 -0.037 3.696 sum -13.507 -3.977 -9.418 16.939 Atomic orbital electron populations 1.20582 0.86008 1.04087 1.03866 1.21710 0.99434 0.88042 0.99430 1.21007 0.90305 1.01374 0.97678 1.37416 1.17590 1.22806 1.20502 1.01675 0.72977 0.72541 0.73614 1.93548 1.77997 1.46299 1.77508 1.93619 1.43601 1.79081 1.77219 1.55329 1.75439 1.23881 1.29878 1.18953 0.90985 0.86791 0.89515 0.94024 1.22779 0.99676 1.00187 1.00619 1.22008 1.24856 0.95109 1.22554 0.91505 1.25699 0.93195 1.06327 0.91682 1.70863 1.45330 1.13960 1.22672 0.84293 0.77585 0.75383 0.77217 1.20483 1.19622 1.19876 1.84049 1.07930 0.91883 1.61552 1.76394 1.02425 1.27470 1.20895 0.89675 0.89791 0.90171 0.81339 0.74803 0.96026 0.91181 0.92690 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.27 36.00 0.37 -0.30 16 2 C 0.09 1.12 6.72 -83.49 -0.56 0.56 16 3 C -0.06 -0.83 9.79 -40.84 -0.40 -1.23 16 4 C -0.77 -12.06 5.81 29.63 0.17 -11.88 16 5 S 2.71 48.21 5.89 -107.50 -0.63 47.58 16 6 O -0.96 -17.63 17.89 -57.17 -1.02 -18.66 16 7 O -0.95 -19.45 17.31 -57.17 -0.99 -20.44 16 8 N -1.08 -20.48 5.46 -5.88 -0.03 -20.52 16 9 C 0.24 5.39 2.48 -69.08 -0.17 5.21 16 10 H 0.04 0.95 6.16 -51.93 -0.32 0.63 16 11 C -0.17 -3.48 9.19 37.16 0.34 -3.13 16 12 C -0.61 -15.87 9.02 -34.44 -0.31 -16.18 16 13 H 0.07 1.85 8.05 -52.48 -0.42 1.43 16 14 C 0.04 1.04 5.29 -17.82 -0.09 0.95 16 15 N -0.90 -26.07 13.70 55.43 0.76 -25.31 16 16 Si 1.03 23.77 26.29 -169.99 -4.47 19.30 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -5.61 5.76 56.52 0.33 -5.28 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 S 0.39 6.01 22.61 -107.50 -2.43 3.58 16 21 N -0.45 -6.43 12.05 32.03 0.39 -6.05 16 22 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.17 1.74 8.06 -52.48 -0.42 1.32 16 26 H 0.42 7.17 8.82 -34.47 -0.30 6.86 16 27 H 0.02 0.37 6.14 -51.92 -0.32 0.05 16 28 H 0.07 1.47 4.89 -51.93 -0.25 1.22 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.27 7.81 8.73 -40.82 -0.36 7.45 16 LS Contribution 283.13 15.07 4.27 4.27 Total: -1.00 -31.55 283.13 -7.78 -39.33 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -2.96 Total: 2.92 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: -0.65 Total: -26.01 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 1.11 Total: -51.87 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -2.01 Total: -39.09 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -4.47 Total: 19.30 kcal Atomic # 16 Polarization: 54.22 SS G_CDS: -3.06 Total: 51.15 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.55 -7.78 -39.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601327627.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.194 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds