Wall clock time and date at job start Mon Mar 30 2020 01:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37814 * 121.56226 * 2 1 4 4 C 1.35129 * 114.76321 * 180.20639 * 3 2 1 5 5 S 1.76205 * 127.24771 * 179.86477 * 4 3 2 6 6 O 1.42094 * 106.40320 * 336.17016 * 5 4 3 7 7 O 1.42098 * 106.40168 * 203.24699 * 5 4 3 8 8 N 1.65599 * 107.21656 * 89.70953 * 5 4 3 9 9 C 1.46499 * 120.00095 * 65.00006 * 8 5 4 10 10 H 1.08995 * 109.47672 * 25.00148 * 9 8 5 11 11 C 1.52997 * 109.47315 * 264.99725 * 9 8 5 12 12 C 1.50702 * 109.47148 * 145.00156 * 9 8 5 13 13 H 1.08003 * 120.00306 * 5.62444 * 12 9 8 14 14 C 1.37876 * 119.99989 * 185.62504 * 12 9 8 15 15 N 1.31519 * 119.99998 * 197.54612 * 14 12 9 16 16 Si 1.86801 * 120.00122 * 17.54600 * 14 12 9 17 17 H 1.48502 * 109.47191 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47352 * 300.00092 * 16 14 12 19 19 H 1.48497 * 109.47139 * 60.00335 * 16 14 12 20 20 S 1.72055 * 105.50376 * 359.60347 * 4 3 2 21 21 N 1.30087 * 121.56072 * 179.74728 * 2 1 3 22 22 H 1.08998 * 109.47320 * 270.22020 * 1 2 3 23 23 H 1.08992 * 109.47104 * 30.22516 * 1 2 3 24 24 H 1.09004 * 109.46609 * 150.22818 * 1 2 3 25 25 H 1.08004 * 122.61412 * 0.03015 * 3 2 1 26 26 H 0.97004 * 119.99887 * 244.99966 * 8 5 4 27 27 H 1.09007 * 109.46775 * 66.40277 * 11 9 8 28 28 H 1.08999 * 109.47903 * 186.40207 * 11 9 8 29 29 H 1.09006 * 109.47377 * 306.40611 * 11 9 8 30 30 H 0.96994 * 119.99858 * 354.85160 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2283 1.1743 0.0000 4 6 3.5701 1.0143 -0.0044 5 16 4.7952 2.2808 -0.0091 6 8 4.1760 3.4359 -0.5583 7 8 5.9726 1.6982 -0.5508 8 7 5.1355 2.6394 1.5714 9 6 5.7563 1.6312 2.4340 10 1 6.3106 0.9203 1.8213 11 6 4.6701 0.8912 3.2171 12 6 6.6987 2.3057 3.3973 13 1 6.7554 3.3837 3.4319 14 6 7.4886 1.5467 4.2346 15 7 8.0430 2.0966 5.2929 16 14 7.7714 -0.2626 3.8658 17 1 8.6496 -0.8492 4.9097 18 1 6.4688 -0.9756 3.8575 19 1 8.4201 -0.4014 2.5372 20 16 3.8305 -0.6864 0.0030 21 7 2.1879 -1.1084 0.0049 22 1 -0.3634 0.0039 1.0276 23 1 -0.3633 0.8879 -0.5173 24 1 -0.3633 -0.8921 -0.5103 25 1 1.7579 2.1465 0.0005 26 1 4.9237 3.5171 1.9260 27 1 4.0565 0.3111 2.5277 28 1 5.1357 0.2217 3.9404 29 1 4.0440 1.6134 3.7411 30 1 7.9582 3.0509 5.4442 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601327627.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:45 Heat of formation + Delta-G solvation = -64.854119 kcal Electronic energy + Delta-G solvation = -17591.368585 eV Core-core repulsion = 14639.354159 eV Total energy + Delta-G solvation = -2952.014426 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.30317 -38.48701 -37.51733 -37.12698 -34.37144 -32.91676 -30.83353 -30.65462 -26.84662 -25.19991 -22.69084 -21.30323 -20.52566 -20.18182 -19.57105 -18.47786 -17.89363 -16.95696 -16.26068 -15.90510 -15.48456 -15.27522 -14.99683 -14.41040 -14.22335 -14.04192 -13.66553 -13.56171 -13.42774 -13.39179 -13.32002 -12.92659 -12.69920 -12.57447 -12.38737 -11.97144 -11.70719 -11.64191 -11.33377 -11.23341 -10.46506 -10.43166 -9.79839 -8.76492 -6.40541 -1.05792 -0.74388 0.08871 0.59539 1.10615 1.45630 1.55335 1.69586 1.95903 2.45347 2.51715 3.03952 3.29287 3.66400 3.84311 4.19341 4.31704 4.32461 4.51780 4.66829 4.69291 4.75673 4.78975 5.20901 5.28418 5.41892 5.46263 5.77743 6.02942 6.16030 6.58324 7.35491 8.62750 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.007309 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.899035 B = 3829.984111 C = 4337.608376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.096 3.904 3 C -0.044 4.044 4 C -0.791 4.791 5 S 2.734 3.266 6 O -0.969 6.969 7 O -0.978 6.978 8 N -1.088 6.088 9 C 0.244 3.756 10 H 0.039 0.961 11 C -0.168 4.168 12 C -0.607 4.607 13 H 0.039 0.961 14 C -0.008 4.008 15 N -0.930 5.930 16 Si 1.052 2.948 17 H -0.283 1.283 18 H -0.230 1.230 19 H -0.264 1.264 20 S 0.345 5.655 21 N -0.452 5.452 22 H 0.101 0.899 23 H 0.112 0.888 24 H 0.086 0.914 25 H 0.201 0.799 26 H 0.422 0.578 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.250 -4.599 -10.170 19.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.084 4.084 4 C -1.004 5.004 5 S 2.818 3.182 6 O -0.959 6.959 7 O -0.968 6.968 8 N -0.850 5.850 9 C 0.138 3.862 10 H 0.057 0.943 11 C -0.227 4.227 12 C -0.646 4.646 13 H 0.057 0.943 14 C -0.209 4.209 15 N -0.565 5.565 16 Si 0.872 3.128 17 H -0.209 1.209 18 H -0.154 1.154 19 H -0.189 1.189 20 S 0.503 5.497 21 N -0.277 5.277 22 H 0.120 0.880 23 H 0.130 0.870 24 H 0.105 0.895 25 H 0.218 0.782 26 H 0.259 0.741 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.215 -7.863 -10.398 19.288 hybrid contribution -1.449 3.378 0.185 3.680 sum -15.663 -4.486 -10.213 19.229 Atomic orbital electron populations 1.20834 0.82487 1.05869 1.05417 1.22410 1.01476 0.87087 0.97162 1.21527 0.89314 1.03099 0.94465 1.36921 1.18048 1.21913 1.23540 1.00628 0.72632 0.72377 0.72518 1.93538 1.78059 1.47040 1.77228 1.93577 1.45949 1.79671 1.77642 1.55177 1.75898 1.23911 1.29970 1.18754 0.91192 0.87058 0.89227 0.94307 1.22645 0.99206 1.00234 1.00647 1.22241 1.25255 0.94037 1.23066 0.94307 1.26906 0.92865 1.09877 0.91259 1.70981 1.47665 1.13204 1.24634 0.84043 0.79554 0.71895 0.77271 1.20871 1.15418 1.18927 1.84181 1.09716 0.92215 1.63587 1.76528 1.01459 1.28223 1.21445 0.88025 0.86963 0.89532 0.78238 0.74145 0.93309 0.92050 0.92063 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.27 71.24 0.73 -0.20 16 2 C 0.10 2.00 6.72 42.72 0.29 2.28 16 3 C -0.04 -0.97 9.79 21.45 0.21 -0.76 16 4 C -0.79 -22.76 5.81 67.10 0.39 -22.37 16 5 S 2.73 93.59 5.89 -56.49 -0.33 93.26 16 6 O -0.97 -33.64 17.89 -128.00 -2.29 -35.93 16 7 O -0.98 -39.88 17.31 -128.00 -2.22 -42.09 16 8 N -1.09 -40.17 5.46 -172.53 -0.94 -41.11 16 9 C 0.24 10.60 2.48 44.25 0.11 10.71 16 10 H 0.04 1.74 6.16 -2.39 -0.01 1.72 16 11 C -0.17 -6.39 9.19 71.98 0.66 -5.73 16 12 C -0.61 -32.19 9.02 25.60 0.23 -31.96 16 13 H 0.04 2.22 8.05 -2.91 -0.02 2.20 16 14 C -0.01 -0.47 5.29 84.65 0.45 -0.02 16 15 N -0.93 -55.62 13.70 21.45 0.29 -55.32 16 16 Si 1.05 47.13 26.29 68.60 1.80 48.93 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.23 -8.82 5.76 99.48 0.57 -8.25 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 20 S 0.34 10.07 22.61 -56.49 -1.28 8.79 16 21 N -0.45 -11.74 12.05 -52.58 -0.63 -12.37 16 22 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.11 0.66 8.11 -2.39 -0.02 0.64 16 24 H 0.09 0.90 8.14 -2.38 -0.02 0.89 16 25 H 0.20 3.09 8.06 -2.91 -0.02 3.07 16 26 H 0.42 14.30 8.82 -96.74 -0.85 13.44 16 27 H 0.05 1.58 6.14 -2.38 -0.01 1.56 16 28 H 0.06 2.44 4.89 -2.39 -0.01 2.42 16 29 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 30 H 0.26 15.48 8.73 -92.71 -0.81 14.68 16 Total: -1.00 -68.85 283.13 -2.37 -71.22 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.16 Total: 12.66 kcal Atomic # 6 Polarization: -51.11 SS G_CDS: 3.07 Total: -48.04 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -1.28 Total: -108.80 kcal Atomic # 8 Polarization: -73.51 SS G_CDS: -4.51 Total: -78.02 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.80 Total: 48.93 kcal Atomic # 16 Polarization: 103.66 SS G_CDS: -1.61 Total: 102.05 kcal Total: -68.85 -2.37 -71.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601327627.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.367 kcal (2) G-P(sol) polarization free energy of solvation -68.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds