Wall clock time and date at job start Mon Mar 30 2020 01:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47148 * 2 1 4 4 N 1.46903 * 109.47114 * 183.05633 * 3 2 1 5 5 C 1.46902 * 111.00046 * 63.47713 * 4 3 2 6 6 C 1.50688 * 109.47159 * 66.04637 * 5 4 3 7 7 C 1.38236 * 120.00285 * 269.72292 * 6 5 4 8 8 C 1.38235 * 120.00229 * 179.76760 * 7 6 5 9 9 C 1.38226 * 120.00047 * 0.48924 * 8 7 6 10 10 C 1.38240 * 120.00176 * 359.78885 * 9 8 7 11 11 C 1.38237 * 120.00084 * 90.00054 * 6 5 4 12 12 C 1.46894 * 110.99663 * 299.52014 * 4 3 2 13 13 C 1.53001 * 109.47107 * 288.32089 * 12 4 3 14 14 H 1.08999 * 109.47268 * 57.07887 * 13 12 4 15 15 C 1.52998 * 109.47251 * 297.07581 * 13 12 4 16 16 C 1.53005 * 109.47030 * 177.07672 * 13 12 4 17 17 C 1.50695 * 109.47236 * 185.00103 * 16 13 12 18 18 H 1.08001 * 119.99839 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00446 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00530 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99660 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47220 * 90.00109 * 21 19 17 23 23 H 1.48502 * 109.46969 * 210.00192 * 21 19 17 24 24 H 1.48500 * 109.46806 * 329.99975 * 21 19 17 25 25 H 1.09002 * 109.46567 * 299.99757 * 1 2 3 26 26 H 1.08995 * 109.47003 * 60.00319 * 1 2 3 27 27 H 1.09002 * 109.46655 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47143 * 239.99749 * 2 1 3 29 29 H 1.08998 * 109.47493 * 119.99584 * 2 1 3 30 30 H 1.08998 * 109.47550 * 63.04957 * 3 2 1 31 31 H 1.09001 * 109.46701 * 303.04947 * 3 2 1 32 32 H 1.09001 * 109.46550 * 186.04584 * 5 4 3 33 33 H 1.09003 * 109.46922 * 306.04055 * 5 4 3 34 34 H 1.08004 * 119.99875 * 0.02562 * 7 6 5 35 35 H 1.08006 * 119.99863 * 180.25423 * 8 7 6 36 36 H 1.08004 * 120.00321 * 179.76723 * 9 8 7 37 37 H 1.08001 * 120.00265 * 179.97438 * 10 9 8 38 38 H 1.07994 * 120.00268 * 359.97438 * 11 6 5 39 39 H 1.09000 * 109.47419 * 48.32117 * 12 4 3 40 40 H 1.08998 * 109.47439 * 168.32265 * 12 4 3 41 41 H 1.08999 * 109.47234 * 300.00327 * 15 13 12 42 42 H 1.08994 * 109.47014 * 60.00221 * 15 13 12 43 43 H 1.09002 * 109.47502 * 180.02562 * 15 13 12 44 44 H 1.08993 * 109.47208 * 304.99935 * 16 13 12 45 45 H 1.09001 * 109.47046 * 64.99694 * 16 13 12 46 46 H 0.96999 * 120.00306 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5072 1.4432 -0.0738 5 6 3.9710 0.8529 -1.3366 6 6 3.5539 1.7336 -2.4859 7 6 2.3380 1.5260 -3.1099 8 6 1.9532 2.3370 -4.1611 9 6 2.7887 3.3492 -4.5950 10 6 4.0071 3.5532 -3.9747 11 6 4.3896 2.7455 -2.9200 12 6 4.0926 0.7466 1.0794 13 6 3.9145 1.6014 2.3357 14 1 2.8556 1.8127 2.4844 15 6 4.6787 2.9165 2.1703 16 6 4.4588 0.8445 3.5490 17 6 4.1732 1.6317 4.8018 18 1 3.6557 2.5776 4.7389 19 6 4.5735 1.1451 6.0281 20 7 4.3248 1.8324 7.1214 21 14 5.4692 -0.4906 6.1367 22 1 6.9324 -0.2619 6.0282 23 1 5.1644 -1.1364 7.4388 24 1 5.0227 -1.3738 5.0296 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.7221 1.9404 0.9160 31 1 1.6327 1.9718 -0.8614 32 1 5.0576 0.7673 -1.3200 33 1 3.5305 -0.1367 -1.4585 34 1 1.6868 0.7328 -2.7734 35 1 1.0013 2.1774 -4.6460 36 1 2.4897 3.9805 -5.4187 37 1 4.6601 4.3438 -4.3140 38 1 5.3413 2.9052 -2.4352 39 1 3.5916 -0.2115 1.2178 40 1 5.1548 0.5787 0.9017 41 1 5.7376 2.7052 2.0216 42 1 4.2910 3.4557 1.3061 43 1 4.5523 3.5254 3.0656 44 1 3.9766 -0.1308 3.6150 45 1 5.5352 0.7110 3.4410 46 1 4.6061 1.4898 7.9842 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602431810.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:20 Heat of formation + Delta-G solvation = 7.861331 kcal Electronic energy + Delta-G solvation = -21622.357865 eV Core-core repulsion = 18704.058084 eV Total energy + Delta-G solvation = -2918.299781 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.74311 -38.03476 -34.88705 -33.01414 -32.24300 -30.95151 -30.86451 -27.54390 -26.66002 -26.11888 -23.76531 -22.59286 -22.36489 -21.59308 -19.97719 -18.66274 -16.84339 -16.67508 -15.88560 -15.72287 -15.29997 -14.67841 -14.45059 -14.18642 -13.92357 -13.49141 -13.42822 -13.18935 -12.85311 -12.56180 -12.36253 -12.04827 -11.86366 -11.65681 -11.57963 -11.43408 -11.23358 -11.02964 -10.97320 -10.89743 -10.76941 -10.44749 -10.32005 -9.71184 -9.62519 -9.37848 -9.02731 -8.95879 -8.80721 -8.48775 -7.93567 -5.99067 -3.95570 1.27937 1.34795 3.32983 3.40320 3.43698 3.66144 4.32289 4.49156 4.73191 4.78571 4.92386 4.99045 5.02954 5.05790 5.27086 5.33872 5.34965 5.42750 5.49040 5.54466 5.59718 5.67823 5.78671 5.88277 5.91280 5.97360 6.00046 6.08871 6.11168 6.20696 6.33309 6.37570 6.40625 6.44154 6.50218 6.59886 6.68555 6.89222 6.94030 7.09934 7.19453 7.30601 7.32790 7.42209 7.55117 7.86563 8.61273 9.07290 9.64074 11.14481 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.024889 B = 0.003930 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.722893 B = 7123.602114 C = 7622.598950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.167 4.167 3 C 0.050 3.950 4 N -0.524 5.524 5 C 0.085 3.915 6 C -0.068 4.068 7 C -0.115 4.115 8 C -0.124 4.124 9 C -0.126 4.126 10 C -0.122 4.122 11 C -0.099 4.099 12 C 0.053 3.947 13 C -0.069 4.069 14 H 0.061 0.939 15 C -0.123 4.123 16 C -0.009 4.009 17 C -0.510 4.510 18 H 0.073 0.927 19 C 0.065 3.935 20 N -0.906 5.906 21 Si 0.877 3.123 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.267 1.267 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.036 0.964 40 H 0.066 0.934 41 H 0.037 0.963 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.011 0.989 45 H 0.010 0.990 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 -1.456 -23.075 23.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.206 4.206 3 C -0.078 4.078 4 N -0.246 5.246 5 C -0.042 4.042 6 C -0.068 4.068 7 C -0.133 4.133 8 C -0.142 4.142 9 C -0.144 4.144 10 C -0.141 4.141 11 C -0.118 4.118 12 C -0.074 4.074 13 C -0.088 4.088 14 H 0.079 0.921 15 C -0.181 4.181 16 C -0.047 4.047 17 C -0.548 4.548 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.705 3.295 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.192 1.192 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.029 0.971 45 H 0.028 0.972 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.650 -0.971 -22.852 23.162 hybrid contribution 0.202 -1.710 0.239 1.738 sum -3.448 -2.681 -22.613 23.031 Atomic orbital electron populations 1.21660 0.95567 1.01328 1.01807 1.22212 0.96604 0.99642 1.02107 1.22315 0.87423 0.95088 1.03022 1.62269 1.07337 1.54133 1.00852 1.21120 1.00450 0.94548 0.88102 1.19799 0.94381 0.96683 0.95937 1.21088 0.96145 0.99838 0.96266 1.21082 0.99583 0.96106 0.97420 1.21103 0.94772 0.98326 1.00229 1.21146 0.96747 0.99537 0.96623 1.21063 0.99903 0.94628 0.96159 1.22436 0.98701 0.95701 0.90602 1.20975 1.00038 0.95404 0.92347 0.92095 1.21578 0.98610 0.97249 1.00640 1.19615 0.95531 0.95725 0.93823 1.21133 1.37243 1.07070 0.89377 0.90850 1.25026 0.95718 0.97017 0.95831 1.69913 1.47849 1.38663 0.98118 0.86816 0.80404 0.84964 0.77301 1.20392 1.21544 1.19158 0.92368 0.93058 0.93105 0.92330 0.91174 0.90075 0.90875 0.90223 0.93856 0.86406 0.86437 0.86490 0.86287 0.85954 0.94609 0.91580 0.94432 0.93590 0.92418 0.97072 0.97178 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.17 -2.00 5.20 -26.73 -0.14 -2.14 16 3 C 0.05 0.66 4.85 -3.82 -0.02 0.64 16 4 N -0.52 -7.36 4.02 -236.08 -0.95 -8.31 16 5 C 0.09 1.02 4.93 -4.98 -0.02 1.00 16 6 C -0.07 -0.78 4.88 -104.63 -0.51 -1.29 16 7 C -0.11 -1.22 7.92 -39.58 -0.31 -1.53 16 8 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 9 C -0.13 -1.20 10.05 -39.59 -0.40 -1.59 16 10 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 11 C -0.10 -1.11 9.70 -39.58 -0.38 -1.49 16 12 C 0.05 0.85 4.22 -3.83 -0.02 0.83 16 13 C -0.07 -1.36 2.33 -90.62 -0.21 -1.57 16 14 H 0.06 1.25 6.64 -51.93 -0.34 0.91 16 15 C -0.12 -2.39 8.87 37.16 0.33 -2.06 16 16 C -0.01 -0.22 3.52 -27.88 -0.10 -0.31 16 17 C -0.51 -14.48 8.96 -34.44 -0.31 -14.79 16 18 H 0.07 2.24 7.30 -52.49 -0.38 1.86 16 19 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 20 N -0.91 -28.16 13.96 55.43 0.77 -27.38 16 21 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 24 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.65 5.73 -51.93 -0.30 0.36 16 29 H 0.07 0.96 6.34 -51.93 -0.33 0.63 16 30 H 0.08 1.22 6.62 -51.93 -0.34 0.87 16 31 H 0.07 0.93 5.94 -51.93 -0.31 0.62 16 32 H 0.08 0.93 7.81 -51.93 -0.41 0.52 16 33 H 0.04 0.50 6.00 -51.93 -0.31 0.19 16 34 H 0.12 1.15 7.44 -52.48 -0.39 0.76 16 35 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 39 H 0.04 0.58 5.84 -51.93 -0.30 0.27 16 40 H 0.07 1.05 7.82 -51.93 -0.41 0.64 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.82 7.69 -51.93 -0.40 0.42 16 43 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 44 H 0.01 0.27 7.20 -51.93 -0.37 -0.11 16 45 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 46 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 353.08 15.07 5.32 5.32 Total: -1.00 -30.31 353.08 -10.04 -40.35 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.90 Total: -0.33 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -2.62 Total: -26.93 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.18 Total: -35.69 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.31 -10.04 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602431810.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.212 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds