Wall clock time and date at job start Mon Mar 30 2020 01:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46895 * 109.46934 * 2 1 4 4 C 1.46894 * 110.99987 * 64.95239 * 3 2 1 5 5 C 1.50703 * 109.47209 * 71.74911 * 4 3 2 6 6 C 1.38260 * 119.99519 * 255.42712 * 5 4 3 7 7 C 1.38217 * 119.99586 * 179.74360 * 6 5 4 8 8 C 1.38254 * 120.00075 * 0.55521 * 7 6 5 9 9 C 1.38218 * 119.99846 * 359.70278 * 8 7 6 10 10 C 1.38209 * 120.00446 * 75.70671 * 5 4 3 11 11 C 1.50706 * 119.99553 * 359.97438 * 10 5 4 12 12 C 1.46903 * 111.00282 * 300.98963 * 3 2 1 13 13 C 1.52993 * 109.47379 * 293.95964 * 12 3 2 14 14 H 1.08999 * 109.47204 * 54.99780 * 13 12 3 15 15 C 1.52998 * 109.47086 * 294.99782 * 13 12 3 16 16 C 1.53005 * 109.47064 * 174.99941 * 13 12 3 17 17 C 1.50700 * 109.47103 * 185.00190 * 16 13 12 18 18 H 1.08001 * 120.00023 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00069 * 179.97438 * 17 16 13 20 20 N 1.31518 * 119.99372 * 359.97438 * 19 17 16 21 21 Si 1.86790 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47431 * 90.00200 * 21 19 17 23 23 H 1.48506 * 109.47105 * 210.00152 * 21 19 17 24 24 H 1.48504 * 109.47537 * 329.99727 * 21 19 17 25 25 H 1.08999 * 109.47604 * 61.75165 * 1 2 3 26 26 H 1.08998 * 109.47377 * 181.75537 * 1 2 3 27 27 H 1.09004 * 109.47023 * 301.75442 * 1 2 3 28 28 H 1.09004 * 109.46701 * 240.00215 * 2 1 3 29 29 H 1.08995 * 109.46758 * 120.00691 * 2 1 3 30 30 H 1.09001 * 109.46944 * 191.74932 * 4 3 2 31 31 H 1.08996 * 109.47045 * 311.74321 * 4 3 2 32 32 H 1.07995 * 120.00577 * 0.02562 * 6 5 4 33 33 H 1.07999 * 120.00069 * 180.27811 * 7 6 5 34 34 H 1.08001 * 120.00285 * 179.72509 * 8 7 6 35 35 H 1.08001 * 119.99978 * 180.02562 * 9 8 7 36 36 H 1.09003 * 109.46985 * 90.00453 * 11 10 5 37 37 H 1.09000 * 109.47031 * 210.00386 * 11 10 5 38 38 H 1.09001 * 109.47159 * 330.00114 * 11 10 5 39 39 H 1.09002 * 109.46424 * 53.96256 * 12 3 2 40 40 H 1.09000 * 109.46762 * 173.95116 * 12 3 2 41 41 H 1.08999 * 109.47082 * 180.02562 * 15 13 12 42 42 H 1.08999 * 109.47097 * 300.00063 * 15 13 12 43 43 H 1.08994 * 109.47453 * 60.00162 * 15 13 12 44 44 H 1.08998 * 109.46819 * 305.00054 * 16 13 12 45 45 H 1.08998 * 109.47039 * 64.99643 * 16 13 12 46 46 H 0.97005 * 119.99399 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6477 2.0748 1.2424 5 6 2.4709 1.5341 2.3830 6 6 1.8995 0.6709 3.2995 7 6 2.6559 0.1708 4.3426 8 6 3.9808 0.5428 4.4761 9 6 4.5505 1.4099 3.5630 10 6 3.7954 1.9056 2.5163 11 6 4.4166 2.8510 1.5206 12 6 1.5293 2.1167 -1.1757 13 6 2.1403 1.5146 -2.4425 14 1 1.9278 0.4461 -2.4759 15 6 3.6545 1.7334 -2.4321 16 6 1.5353 2.1937 -3.6729 17 6 2.0442 1.5185 -4.9204 18 1 2.7308 0.6884 -4.8434 19 6 1.6333 1.9605 -6.1601 20 7 0.7968 2.9711 -6.2537 21 14 2.2646 1.1241 -7.7063 22 1 1.3520 0.0123 -8.0756 23 1 2.3180 2.1099 -8.8157 24 1 3.6258 0.5852 -7.4572 25 1 -0.3634 0.4864 -0.9052 26 1 -0.3634 -1.0271 0.0315 27 1 -0.3633 0.5409 0.8739 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.8339 3.1433 1.1344 31 1 0.5900 1.9093 1.4472 32 1 0.8634 0.3838 3.1978 33 1 2.2109 -0.5070 5.0560 34 1 4.5707 0.1555 5.2938 35 1 5.5856 1.7002 3.6670 36 1 4.2839 3.8775 1.8625 37 1 5.4807 2.6336 1.4280 38 1 3.9346 2.7257 0.5510 39 1 0.4431 2.0401 -1.2242 40 1 1.8164 3.1653 -1.0966 41 1 4.0898 1.3049 -3.3349 42 1 3.8670 2.8020 -2.3987 43 1 4.0856 1.2497 -1.5556 44 1 0.4489 2.1144 -3.6343 45 1 1.8226 3.2451 -3.6857 46 1 0.5080 3.2823 -7.1259 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602441858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:45 Heat of formation + Delta-G solvation = 6.226636 kcal Electronic energy + Delta-G solvation = -21776.385124 eV Core-core repulsion = 18858.014457 eV Total energy + Delta-G solvation = -2918.370667 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.81948 -37.92408 -34.61070 -32.88574 -32.16680 -31.43614 -29.60370 -27.31653 -26.65789 -25.92538 -24.92947 -23.09834 -22.09005 -21.27158 -19.85009 -18.53461 -16.41642 -16.29216 -16.04291 -15.50245 -15.02076 -14.84767 -14.39920 -14.00103 -13.63524 -13.32908 -13.17584 -12.99637 -12.55613 -12.33064 -12.18297 -12.16193 -11.99951 -11.74159 -11.61349 -11.29396 -11.18003 -10.94548 -10.90148 -10.80798 -10.73729 -10.45774 -10.25361 -10.18914 -9.54317 -9.11934 -8.94310 -8.80200 -8.53122 -8.30580 -7.89898 -5.95772 -3.96485 1.35571 1.40156 3.34089 3.40514 3.43997 3.70394 4.35327 4.50836 4.81798 4.84849 4.98110 5.03132 5.23187 5.28786 5.39946 5.40473 5.45270 5.56900 5.62513 5.66432 5.71683 5.77239 5.81047 5.90670 5.96170 6.04805 6.10603 6.15784 6.27798 6.36801 6.41490 6.44570 6.49227 6.51540 6.63524 6.71958 6.78852 7.02456 7.06470 7.18742 7.25026 7.43516 7.49380 7.72319 7.88739 8.04998 8.49424 9.10038 9.66816 11.15772 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.030744 B = 0.003703 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.520974 B = 7560.510110 C = 7910.522927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.049 3.951 3 N -0.524 5.524 4 C 0.085 3.915 5 C -0.071 4.071 6 C -0.112 4.112 7 C -0.132 4.132 8 C -0.122 4.122 9 C -0.126 4.126 10 C -0.057 4.057 11 C -0.124 4.124 12 C 0.055 3.945 13 C -0.079 4.079 14 H 0.056 0.944 15 C -0.123 4.123 16 C 0.028 3.972 17 C -0.511 4.511 18 H 0.056 0.944 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.035 0.965 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.038 0.962 43 H 0.042 0.958 44 H 0.011 0.989 45 H 0.015 0.985 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 -3.220 20.478 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.079 4.079 3 N -0.247 5.247 4 C -0.042 4.042 5 C -0.071 4.071 6 C -0.131 4.131 7 C -0.150 4.150 8 C -0.141 4.141 9 C -0.145 4.145 10 C -0.057 4.057 11 C -0.181 4.181 12 C -0.072 4.072 13 C -0.098 4.098 14 H 0.074 0.926 15 C -0.180 4.180 16 C -0.010 4.010 17 C -0.549 4.549 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.029 0.971 45 H 0.033 0.967 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.845 -3.106 20.303 20.896 hybrid contribution -0.681 -0.454 -0.809 1.151 sum 3.164 -3.560 19.495 20.068 Atomic orbital electron populations 1.22420 0.98689 1.01947 1.02127 1.22136 0.92567 0.90597 1.02577 1.62260 1.59226 1.02135 1.01062 1.21078 0.96147 0.98441 0.88555 1.19706 0.94140 0.97497 0.95803 1.21038 0.99650 0.97426 0.94984 1.21026 0.94522 1.00835 0.98604 1.21063 0.95323 0.98452 0.99224 1.21044 0.99692 0.98550 0.95165 1.19790 0.93209 0.97372 0.95364 1.20942 1.00617 0.96969 0.99548 1.22411 0.97419 0.97437 0.89922 1.21194 0.95603 0.99533 0.93464 0.92577 1.21590 0.96045 1.00182 1.00194 1.19117 0.95462 0.95708 0.90681 1.21237 1.26805 1.15957 0.90899 0.92620 1.25014 0.95290 0.95155 0.99090 1.69970 1.33485 1.26226 1.24046 0.86648 0.79313 0.79224 0.83138 1.20801 1.21338 1.19885 0.91574 0.92513 0.93060 0.90075 0.91428 0.90203 0.93824 0.86589 0.86582 0.86587 0.86419 0.91918 0.92074 0.88800 0.94690 0.91526 0.92903 0.94285 0.93866 0.97060 0.96672 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 9.25 37.16 0.34 -2.15 16 2 C 0.05 0.68 5.69 -3.83 -0.02 0.66 16 3 N -0.52 -7.48 3.12 -236.08 -0.74 -8.22 16 4 C 0.09 1.07 4.13 -4.98 -0.02 1.05 16 5 C -0.07 -0.87 4.67 -104.62 -0.49 -1.36 16 6 C -0.11 -1.26 9.02 -39.58 -0.36 -1.61 16 7 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 8 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 9 C -0.13 -1.39 9.70 -39.58 -0.38 -1.77 16 10 C -0.06 -0.69 5.88 -104.63 -0.62 -1.30 16 11 C -0.12 -1.44 9.32 36.01 0.34 -1.10 16 12 C 0.05 0.92 4.08 -3.83 -0.02 0.91 16 13 C -0.08 -1.59 2.26 -90.62 -0.20 -1.79 16 14 H 0.06 1.16 6.35 -51.93 -0.33 0.83 16 15 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 16 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 17 C -0.51 -14.26 8.41 -34.44 -0.29 -14.55 16 18 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 21 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.07 0.98 6.35 -51.93 -0.33 0.65 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.61 6.23 -51.93 -0.32 0.28 16 28 H 0.08 1.24 6.42 -51.93 -0.33 0.90 16 29 H 0.07 0.90 6.84 -51.93 -0.36 0.54 16 30 H 0.08 0.99 7.20 -51.93 -0.37 0.62 16 31 H 0.04 0.53 5.76 -51.93 -0.30 0.23 16 32 H 0.12 1.16 8.00 -52.49 -0.42 0.74 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.09 1.24 6.16 -51.93 -0.32 0.92 16 39 H 0.03 0.60 6.01 -51.93 -0.31 0.29 16 40 H 0.07 1.11 7.86 -51.93 -0.41 0.71 16 41 H 0.05 1.10 6.95 -51.93 -0.36 0.73 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -29.43 354.77 -9.95 -39.38 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -7.88 Total: -0.63 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -2.40 Total: -26.37 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.00 Total: -34.46 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.43 -9.95 -39.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602441858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.611 kcal (2) G-P(sol) polarization free energy of solvation -29.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds